| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is yfgL [C]
Identifier: 99080831
GI number: 99080831
Start: 1061024
End: 1062349
Strand: Direct
Name: yfgL [C]
Synonym: TM1040_0990
Alternate gene names: 99080831
Gene position: 1061024-1062349 (Clockwise)
Preceding gene: 99080830
Following gene: 99080832
Centisome position: 33.15
GC content: 65.08
Gene sequence:
>1326_bases ATGATGGCAATTCCAGGTGGCTTTGGCCTGCGCGCGGGCGTGATGGCGACGGCGATGGCGGCTCTCTTGATGGGCTGCGC AGAGCCGGAGGAGATCCTGCGCGGCCCCCGCGAAGACATCCGCGCCGAAGCCCGGGGCGGAGAGTTCGAAAACCGCTCGG TCGCCATCTCATTGCCCCGCGTCGTGACCAACACCGCGTGGCAGCAAAGTCCGGGTCAGCCGACCACGCGCACCGCCCAT GCGGCGCTCTCGGCGGCACCGGCGCTGGTCTGGTCCACCAATATTGGCGCAGGAGACAGCCGCAAACAGCGCATCACCGC AGCTCCCGTGGTGGGCGGAGGCCGGATCTATACGCTCGATGCGGCCTCGACCGTATCTGCGGTATCGCCCGCTGGCGCCG TCTTGTGGCAGCACACCATCGAGCCGGCCAGTGATGATGCGGACGATGCCACGGGAGGCGGCATCGCTTACGCGGATGGC GTGCTTTATGTGTCGTCGGGCTTTGGCGTCCTGAGCGCGCTTGATGCAAAAACCGGCGCGCCGGTGTGGCGACAGGAACT GGACGCAACCGGCTCTGGCAGCCCCACGATTCGCGATGGGCTTCTGTATCTGGTGGCCGGGGATGACACCGCCTGGGTGA TTGACACGAAGGATGGGCGTATCGCCTGGCAACTGGAAGCGACGCCAAGCGCGTCCAACATCCTGGGCGCTCCGGCGCCT GTGGTGGGCTCCGAGATCTCGATCTTTGCCTTTGGCTCGGGGGATCTGATCGGCACGTTCCGTCGCGGAGGGTTCCGCCG CTGGATCGCATCTGTGTCTGGTGCGCGCACCGGGAGCGCGATTTCGCAGATCGGAGATGTGACCGGCGCCCCCTTCATGG ATGGCAATCGCGTCTATGTCGGCAACCAGTCGGGGCGTACCGCGGCCTTTGATGTGGCCTCGGGCGATCGCCTCTGGACC GCGTTTGAAGGCACGTTCGGCCCGGTCTGGGCGACGGGCGGTAGCCTGTTCTTTGTCAGTGACCGCAGCCAGCTGATGCG CCTCAGTGCCAATGATGGCAGTCCGATCTGGTCTGTGGATCTGCCGGGCTACCTGAAAGACAAGCCCCGCAAACGTGCAG AGATCGTAGCGCATCACGGCCCCATTCTCGCTGGCGGTCAACTGGTGGTGGCCTCCAATGATGGGCTTTTGCGCTTCTTT GATCCGGTCGATGGACGGCAGACCCGCACCGTCGAGATCAAGGGCGGTGCCACGACGGAGCCCGTCGTGGCCAATGGCAC GCTTTATGTGGTGACGCGTGATGGCCAACTGGCGGCCTTTCGCTAA
Upstream 100 bases:
>100_bases GATCGCTGGACGAAGCAGCGCAAGAAGGCTGAGGTCGGGTTCGGGCGGGACGCGGCCGAACCAGTGATAATGACCCATGG AAAGTGACAGGGGCGGAGTG
Downstream 100 bases:
>100_bases GAGAGACTTCTGACCCGAGGTTTTGCGCTGCGCCTTGCGCATCGCCGGGGGCGCGCCGTTGGCGCGGTGAGGCCGGGCGT AAGACGGCATTGGTTCTGGT
Product: Pyrrolo-quinoline quinone
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 441; Mature: 441
Protein sequence:
>441_residues MMAIPGGFGLRAGVMATAMAALLMGCAEPEEILRGPREDIRAEARGGEFENRSVAISLPRVVTNTAWQQSPGQPTTRTAH AALSAAPALVWSTNIGAGDSRKQRITAAPVVGGGRIYTLDAASTVSAVSPAGAVLWQHTIEPASDDADDATGGGIAYADG VLYVSSGFGVLSALDAKTGAPVWRQELDATGSGSPTIRDGLLYLVAGDDTAWVIDTKDGRIAWQLEATPSASNILGAPAP VVGSEISIFAFGSGDLIGTFRRGGFRRWIASVSGARTGSAISQIGDVTGAPFMDGNRVYVGNQSGRTAAFDVASGDRLWT AFEGTFGPVWATGGSLFFVSDRSQLMRLSANDGSPIWSVDLPGYLKDKPRKRAEIVAHHGPILAGGQLVVASNDGLLRFF DPVDGRQTRTVEIKGGATTEPVVANGTLYVVTRDGQLAAFR
Sequences:
>Translated_441_residues MMAIPGGFGLRAGVMATAMAALLMGCAEPEEILRGPREDIRAEARGGEFENRSVAISLPRVVTNTAWQQSPGQPTTRTAH AALSAAPALVWSTNIGAGDSRKQRITAAPVVGGGRIYTLDAASTVSAVSPAGAVLWQHTIEPASDDADDATGGGIAYADG VLYVSSGFGVLSALDAKTGAPVWRQELDATGSGSPTIRDGLLYLVAGDDTAWVIDTKDGRIAWQLEATPSASNILGAPAP VVGSEISIFAFGSGDLIGTFRRGGFRRWIASVSGARTGSAISQIGDVTGAPFMDGNRVYVGNQSGRTAAFDVASGDRLWT AFEGTFGPVWATGGSLFFVSDRSQLMRLSANDGSPIWSVDLPGYLKDKPRKRAEIVAHHGPILAGGQLVVASNDGLLRFF DPVDGRQTRTVEIKGGATTEPVVANGTLYVVTRDGQLAAFR >Mature_441_residues MMAIPGGFGLRAGVMATAMAALLMGCAEPEEILRGPREDIRAEARGGEFENRSVAISLPRVVTNTAWQQSPGQPTTRTAH AALSAAPALVWSTNIGAGDSRKQRITAAPVVGGGRIYTLDAASTVSAVSPAGAVLWQHTIEPASDDADDATGGGIAYADG VLYVSSGFGVLSALDAKTGAPVWRQELDATGSGSPTIRDGLLYLVAGDDTAWVIDTKDGRIAWQLEATPSASNILGAPAP VVGSEISIFAFGSGDLIGTFRRGGFRRWIASVSGARTGSAISQIGDVTGAPFMDGNRVYVGNQSGRTAAFDVASGDRLWT AFEGTFGPVWATGGSLFFVSDRSQLMRLSANDGSPIWSVDLPGYLKDKPRKRAEIVAHHGPILAGGQLVVASNDGLLRFF DPVDGRQTRTVEIKGGATTEPVVANGTLYVVTRDGQLAAFR
Specific function: Unknown
COG id: COG1520
COG function: function code S; FOG: WD40-like repeat
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788859, Length=366, Percent_Identity=22.6775956284153, Blast_Score=94, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 [H]
Pfam domain/function: PF01011 PQQ [H]
EC number: NA
Molecular weight: Translated: 45877; Mature: 45877
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMAIPGGFGLRAGVMATAMAALLMGCAEPEEILRGPREDIRAEARGGEFENRSVAISLPR CEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCCEEEEECCH VVTNTAWQQSPGQPTTRTAHAALSAAPALVWSTNIGAGDSRKQRITAAPVVGGGRIYTLD HHHCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCEEEECCEECCCEEEEEE AASTVSAVSPAGAVLWQHTIEPASDDADDATGGGIAYADGVLYVSSGFGVLSALDAKTGA CCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEECCCCCCC PVWRQELDATGSGSPTIRDGLLYLVAGDDTAWVIDTKDGRIAWQLEATPSASNILGAPAP CHHHHHCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCC VVGSEISIFAFGSGDLIGTFRRGGFRRWIASVSGARTGSAISQIGDVTGAPFMDGNRVYV CCCCCEEEEEECCCCEEEHHHCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCEECCCEEEE GNQSGRTAAFDVASGDRLWTAFEGTFGPVWATGGSLFFVSDRSQLMRLSANDGSPIWSVD ECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEEEEECCCEEEEEECCCCCEEEEEC LPGYLKDKPRKRAEIVAHHGPILAGGQLVVASNDGLLRFFDPVDGRQTRTVEIKGGATTE CCCHHCCCCCCHHHEEEECCCEEECCEEEEECCCCEEEEECCCCCCEEEEEEECCCCCCC PVVANGTLYVVTRDGQLAAFR CEEECCEEEEEEECCCEEECC >Mature Secondary Structure MMAIPGGFGLRAGVMATAMAALLMGCAEPEEILRGPREDIRAEARGGEFENRSVAISLPR CEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCCEEEEECCH VVTNTAWQQSPGQPTTRTAHAALSAAPALVWSTNIGAGDSRKQRITAAPVVGGGRIYTLD HHHCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCEEEECCEECCCEEEEEE AASTVSAVSPAGAVLWQHTIEPASDDADDATGGGIAYADGVLYVSSGFGVLSALDAKTGA CCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEECCCCCCC PVWRQELDATGSGSPTIRDGLLYLVAGDDTAWVIDTKDGRIAWQLEATPSASNILGAPAP CHHHHHCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCC VVGSEISIFAFGSGDLIGTFRRGGFRRWIASVSGARTGSAISQIGDVTGAPFMDGNRVYV CCCCCEEEEEECCCCEEEHHHCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCEECCCEEEE GNQSGRTAAFDVASGDRLWTAFEGTFGPVWATGGSLFFVSDRSQLMRLSANDGSPIWSVD ECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEEEEECCCEEEEEECCCCCEEEEEC LPGYLKDKPRKRAEIVAHHGPILAGGQLVVASNDGLLRFFDPVDGRQTRTVEIKGGATTE CCCHHCCCCCCHHHEEEECCCEEECCEEEEECCCCEEEEECCCCCCEEEEEEECCCCCCC PVVANGTLYVVTRDGQLAAFR CEEECCEEEEEEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]