Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is yfgL [C]

Identifier: 99080831

GI number: 99080831

Start: 1061024

End: 1062349

Strand: Direct

Name: yfgL [C]

Synonym: TM1040_0990

Alternate gene names: 99080831

Gene position: 1061024-1062349 (Clockwise)

Preceding gene: 99080830

Following gene: 99080832

Centisome position: 33.15

GC content: 65.08

Gene sequence:

>1326_bases
ATGATGGCAATTCCAGGTGGCTTTGGCCTGCGCGCGGGCGTGATGGCGACGGCGATGGCGGCTCTCTTGATGGGCTGCGC
AGAGCCGGAGGAGATCCTGCGCGGCCCCCGCGAAGACATCCGCGCCGAAGCCCGGGGCGGAGAGTTCGAAAACCGCTCGG
TCGCCATCTCATTGCCCCGCGTCGTGACCAACACCGCGTGGCAGCAAAGTCCGGGTCAGCCGACCACGCGCACCGCCCAT
GCGGCGCTCTCGGCGGCACCGGCGCTGGTCTGGTCCACCAATATTGGCGCAGGAGACAGCCGCAAACAGCGCATCACCGC
AGCTCCCGTGGTGGGCGGAGGCCGGATCTATACGCTCGATGCGGCCTCGACCGTATCTGCGGTATCGCCCGCTGGCGCCG
TCTTGTGGCAGCACACCATCGAGCCGGCCAGTGATGATGCGGACGATGCCACGGGAGGCGGCATCGCTTACGCGGATGGC
GTGCTTTATGTGTCGTCGGGCTTTGGCGTCCTGAGCGCGCTTGATGCAAAAACCGGCGCGCCGGTGTGGCGACAGGAACT
GGACGCAACCGGCTCTGGCAGCCCCACGATTCGCGATGGGCTTCTGTATCTGGTGGCCGGGGATGACACCGCCTGGGTGA
TTGACACGAAGGATGGGCGTATCGCCTGGCAACTGGAAGCGACGCCAAGCGCGTCCAACATCCTGGGCGCTCCGGCGCCT
GTGGTGGGCTCCGAGATCTCGATCTTTGCCTTTGGCTCGGGGGATCTGATCGGCACGTTCCGTCGCGGAGGGTTCCGCCG
CTGGATCGCATCTGTGTCTGGTGCGCGCACCGGGAGCGCGATTTCGCAGATCGGAGATGTGACCGGCGCCCCCTTCATGG
ATGGCAATCGCGTCTATGTCGGCAACCAGTCGGGGCGTACCGCGGCCTTTGATGTGGCCTCGGGCGATCGCCTCTGGACC
GCGTTTGAAGGCACGTTCGGCCCGGTCTGGGCGACGGGCGGTAGCCTGTTCTTTGTCAGTGACCGCAGCCAGCTGATGCG
CCTCAGTGCCAATGATGGCAGTCCGATCTGGTCTGTGGATCTGCCGGGCTACCTGAAAGACAAGCCCCGCAAACGTGCAG
AGATCGTAGCGCATCACGGCCCCATTCTCGCTGGCGGTCAACTGGTGGTGGCCTCCAATGATGGGCTTTTGCGCTTCTTT
GATCCGGTCGATGGACGGCAGACCCGCACCGTCGAGATCAAGGGCGGTGCCACGACGGAGCCCGTCGTGGCCAATGGCAC
GCTTTATGTGGTGACGCGTGATGGCCAACTGGCGGCCTTTCGCTAA

Upstream 100 bases:

>100_bases
GATCGCTGGACGAAGCAGCGCAAGAAGGCTGAGGTCGGGTTCGGGCGGGACGCGGCCGAACCAGTGATAATGACCCATGG
AAAGTGACAGGGGCGGAGTG

Downstream 100 bases:

>100_bases
GAGAGACTTCTGACCCGAGGTTTTGCGCTGCGCCTTGCGCATCGCCGGGGGCGCGCCGTTGGCGCGGTGAGGCCGGGCGT
AAGACGGCATTGGTTCTGGT

Product: Pyrrolo-quinoline quinone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MMAIPGGFGLRAGVMATAMAALLMGCAEPEEILRGPREDIRAEARGGEFENRSVAISLPRVVTNTAWQQSPGQPTTRTAH
AALSAAPALVWSTNIGAGDSRKQRITAAPVVGGGRIYTLDAASTVSAVSPAGAVLWQHTIEPASDDADDATGGGIAYADG
VLYVSSGFGVLSALDAKTGAPVWRQELDATGSGSPTIRDGLLYLVAGDDTAWVIDTKDGRIAWQLEATPSASNILGAPAP
VVGSEISIFAFGSGDLIGTFRRGGFRRWIASVSGARTGSAISQIGDVTGAPFMDGNRVYVGNQSGRTAAFDVASGDRLWT
AFEGTFGPVWATGGSLFFVSDRSQLMRLSANDGSPIWSVDLPGYLKDKPRKRAEIVAHHGPILAGGQLVVASNDGLLRFF
DPVDGRQTRTVEIKGGATTEPVVANGTLYVVTRDGQLAAFR

Sequences:

>Translated_441_residues
MMAIPGGFGLRAGVMATAMAALLMGCAEPEEILRGPREDIRAEARGGEFENRSVAISLPRVVTNTAWQQSPGQPTTRTAH
AALSAAPALVWSTNIGAGDSRKQRITAAPVVGGGRIYTLDAASTVSAVSPAGAVLWQHTIEPASDDADDATGGGIAYADG
VLYVSSGFGVLSALDAKTGAPVWRQELDATGSGSPTIRDGLLYLVAGDDTAWVIDTKDGRIAWQLEATPSASNILGAPAP
VVGSEISIFAFGSGDLIGTFRRGGFRRWIASVSGARTGSAISQIGDVTGAPFMDGNRVYVGNQSGRTAAFDVASGDRLWT
AFEGTFGPVWATGGSLFFVSDRSQLMRLSANDGSPIWSVDLPGYLKDKPRKRAEIVAHHGPILAGGQLVVASNDGLLRFF
DPVDGRQTRTVEIKGGATTEPVVANGTLYVVTRDGQLAAFR
>Mature_441_residues
MMAIPGGFGLRAGVMATAMAALLMGCAEPEEILRGPREDIRAEARGGEFENRSVAISLPRVVTNTAWQQSPGQPTTRTAH
AALSAAPALVWSTNIGAGDSRKQRITAAPVVGGGRIYTLDAASTVSAVSPAGAVLWQHTIEPASDDADDATGGGIAYADG
VLYVSSGFGVLSALDAKTGAPVWRQELDATGSGSPTIRDGLLYLVAGDDTAWVIDTKDGRIAWQLEATPSASNILGAPAP
VVGSEISIFAFGSGDLIGTFRRGGFRRWIASVSGARTGSAISQIGDVTGAPFMDGNRVYVGNQSGRTAAFDVASGDRLWT
AFEGTFGPVWATGGSLFFVSDRSQLMRLSANDGSPIWSVDLPGYLKDKPRKRAEIVAHHGPILAGGQLVVASNDGLLRFF
DPVDGRQTRTVEIKGGATTEPVVANGTLYVVTRDGQLAAFR

Specific function: Unknown

COG id: COG1520

COG function: function code S; FOG: WD40-like repeat

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788859, Length=366, Percent_Identity=22.6775956284153, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018391
- InterPro:   IPR002372
- InterPro:   IPR011047 [H]

Pfam domain/function: PF01011 PQQ [H]

EC number: NA

Molecular weight: Translated: 45877; Mature: 45877

Theoretical pI: Translated: 5.47; Mature: 5.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAIPGGFGLRAGVMATAMAALLMGCAEPEEILRGPREDIRAEARGGEFENRSVAISLPR
CEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCCEEEEECCH
VVTNTAWQQSPGQPTTRTAHAALSAAPALVWSTNIGAGDSRKQRITAAPVVGGGRIYTLD
HHHCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCEEEECCEECCCEEEEEE
AASTVSAVSPAGAVLWQHTIEPASDDADDATGGGIAYADGVLYVSSGFGVLSALDAKTGA
CCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEECCCCCCC
PVWRQELDATGSGSPTIRDGLLYLVAGDDTAWVIDTKDGRIAWQLEATPSASNILGAPAP
CHHHHHCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCC
VVGSEISIFAFGSGDLIGTFRRGGFRRWIASVSGARTGSAISQIGDVTGAPFMDGNRVYV
CCCCCEEEEEECCCCEEEHHHCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCEECCCEEEE
GNQSGRTAAFDVASGDRLWTAFEGTFGPVWATGGSLFFVSDRSQLMRLSANDGSPIWSVD
ECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEEEEECCCEEEEEECCCCCEEEEEC
LPGYLKDKPRKRAEIVAHHGPILAGGQLVVASNDGLLRFFDPVDGRQTRTVEIKGGATTE
CCCHHCCCCCCHHHEEEECCCEEECCEEEEECCCCEEEEECCCCCCEEEEEEECCCCCCC
PVVANGTLYVVTRDGQLAAFR
CEEECCEEEEEEECCCEEECC
>Mature Secondary Structure
MMAIPGGFGLRAGVMATAMAALLMGCAEPEEILRGPREDIRAEARGGEFENRSVAISLPR
CEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCCEEEEECCH
VVTNTAWQQSPGQPTTRTAHAALSAAPALVWSTNIGAGDSRKQRITAAPVVGGGRIYTLD
HHHCCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCCCCCEEEECCEECCCEEEEEE
AASTVSAVSPAGAVLWQHTIEPASDDADDATGGGIAYADGVLYVSSGFGVLSALDAKTGA
CCCHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEECCCCCCC
PVWRQELDATGSGSPTIRDGLLYLVAGDDTAWVIDTKDGRIAWQLEATPSASNILGAPAP
CHHHHHCCCCCCCCCCEECCEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCCCCCCC
VVGSEISIFAFGSGDLIGTFRRGGFRRWIASVSGARTGSAISQIGDVTGAPFMDGNRVYV
CCCCCEEEEEECCCCEEEHHHCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCEECCCEEEE
GNQSGRTAAFDVASGDRLWTAFEGTFGPVWATGGSLFFVSDRSQLMRLSANDGSPIWSVD
ECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEEEEECCCEEEEEECCCCCEEEEEC
LPGYLKDKPRKRAEIVAHHGPILAGGQLVVASNDGLLRFFDPVDGRQTRTVEIKGGATTE
CCCHHCCCCCCHHHEEEECCCEEECCEEEEECCCCEEEEECCCCCCEEEEEEECCCCCCC
PVVANGTLYVVTRDGQLAAFR
CEEECCEEEEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]