| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080830
Identifier: 99080830
GI number: 99080830
Start: 1060287
End: 1060955
Strand: Direct
Name: 99080830
Synonym: TM1040_0989
Alternate gene names: NA
Gene position: 1060287-1060955 (Clockwise)
Preceding gene: 99080825
Following gene: 99080831
Centisome position: 33.12
GC content: 64.13
Gene sequence:
>669_bases ATGAGCGATACCGACAGTTTTATCGACGAGGTCACAGAAGAGGTTCGCCGGGACCGGCTGTTCTTGATGCTCAAGCGCTA TGGCTGGATTGGCGCTGCGGCTGTTTTGCTGATCGTGGGTGGCGCCAGCTGGCGCGAATACAGCAACGCCAAGGCCGTGG GTGCGGCGCAGGACGTGGGCGACAAGATCTCCGCCGCGCTCGCGTCAGATGCGCCCGAAGCGCGCGCAGCCGCCCTTGCC GAGATTTCCGCAGACCAGGCAGGGGCGCAGGCCGTGGTCGATTTTGCGCAGGCGGCAGCGCTTGTGGATGCGGGCGAGGT TGAACAGGCCGCAGCCCTTCTCGACGGGATCGCGCAGAACGGCGATCTGGCGCAGGTGTATCGCGACATTGCGGCTTTTA AATCGGTGACGCTGCAGGCTGAAACCCTCGCCCCCGAAGAGCGCCGCTTGCGCCTAGAAACACTGGCCGCGGCCGGCGGG ACGATGCAGTTCCTCGCCAGCGAGCAACTGGCGCTTCTCGACATCGAAGAAGGCGAGACCGACGCCGCGCTTGCACGGCT GAGAGACATCGCAGCCTCTGCCGGTGTGTCTCGAGACTTGCAAGAGCGGGTTTCACAAGTGATTGTGGCCCTCGGTGGAT CGCTGGACGAAGCAGCGCAAGAAGGCTGA
Upstream 100 bases:
>100_bases GGGACTTGGCTTGCTGCGCGCCACAGGCTATGTCACATCGACACATATATTATCCGCACCACGCAGGGGCGGAAAGACTT GCGGGACAGGGGCCGTTTTT
Downstream 100 bases:
>100_bases GGTCGGGTTCGGGCGGGACGCGGCCGAACCAGTGATAATGACCCATGGAAAGTGACAGGGGCGGAGTGATGATGGCAATT CCAGGTGGCTTTGGCCTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 222; Mature: 221
Protein sequence:
>222_residues MSDTDSFIDEVTEEVRRDRLFLMLKRYGWIGAAAVLLIVGGASWREYSNAKAVGAAQDVGDKISAALASDAPEARAAALA EISADQAGAQAVVDFAQAAALVDAGEVEQAAALLDGIAQNGDLAQVYRDIAAFKSVTLQAETLAPEERRLRLETLAAAGG TMQFLASEQLALLDIEEGETDAALARLRDIAASAGVSRDLQERVSQVIVALGGSLDEAAQEG
Sequences:
>Translated_222_residues MSDTDSFIDEVTEEVRRDRLFLMLKRYGWIGAAAVLLIVGGASWREYSNAKAVGAAQDVGDKISAALASDAPEARAAALA EISADQAGAQAVVDFAQAAALVDAGEVEQAAALLDGIAQNGDLAQVYRDIAAFKSVTLQAETLAPEERRLRLETLAAAGG TMQFLASEQLALLDIEEGETDAALARLRDIAASAGVSRDLQERVSQVIVALGGSLDEAAQEG >Mature_221_residues SDTDSFIDEVTEEVRRDRLFLMLKRYGWIGAAAVLLIVGGASWREYSNAKAVGAAQDVGDKISAALASDAPEARAAALAE ISADQAGAQAVVDFAQAAALVDAGEVEQAAALLDGIAQNGDLAQVYRDIAAFKSVTLQAETLAPEERRLRLETLAAAGGT MQFLASEQLALLDIEEGETDAALARLRDIAASAGVSRDLQERVSQVIVALGGSLDEAAQEG
Specific function: Unknown
COG id: COG4649
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23161; Mature: 23030
Theoretical pI: Translated: 3.99; Mature: 3.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDTDSFIDEVTEEVRRDRLFLMLKRYGWIGAAAVLLIVGGASWREYSNAKAVGAAQDVG CCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHCCCHHCCCHHHHH DKISAALASDAPEARAAALAEISADQAGAQAVVDFAQAAALVDAGEVEQAAALLDGIAQN HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC GDLAQVYRDIAAFKSVTLQAETLAPEERRLRLETLAAAGGTMQFLASEQLALLDIEEGET CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCEEEEECCCCCH DAALARLRDIAASAGVSRDLQERVSQVIVALGGSLDEAAQEG HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCC >Mature Secondary Structure SDTDSFIDEVTEEVRRDRLFLMLKRYGWIGAAAVLLIVGGASWREYSNAKAVGAAQDVG CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHCCCHHCCCHHHHH DKISAALASDAPEARAAALAEISADQAGAQAVVDFAQAAALVDAGEVEQAAALLDGIAQN HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCC GDLAQVYRDIAAFKSVTLQAETLAPEERRLRLETLAAAGGTMQFLASEQLALLDIEEGET CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCEEEEECCCCCH DAALARLRDIAASAGVSRDLQERVSQVIVALGGSLDEAAQEG HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA