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The map label for this gene is soxB [H]

Identifier: 99080810

GI number: 99080810

Start: 1035985

End: 1037280

Strand: Direct

Name: soxB [H]

Synonym: TM1040_0969

Alternate gene names: 99080810

Gene position: 1035985-1037280 (Clockwise)

Preceding gene: 99080806

Following gene: 99080811

Centisome position: 32.37

GC content: 60.8

Gene sequence:

>1296_bases
ATGCGATCCCGGTCATATCTTGAGGCCAGACACGAAGCATTGGATTCGCTCATGAAACGCTATTCAGCCTTTGCAGTGGC
GCGGGAAGGCCTTCGCTACCACAGCGGATGGGAACGCGCCTGGCGCTCCCCGGAACCCAAACGTCACTATGACGTCATCA
TCGTAGGCGCGGGTGGCCATGGGCTCGCTACGGCCTATTACCTTGGGAAAAACTTTGGCATCACCAATGTTGCGGTGATC
GAAAAGGGTTGGCTGGGGGGCGGCAATACGGGCCGCAACACCACCATCATCCGTTCGAACTACCTGCAGGATCCCTCTGC
CGCGATCTACGAGAAATCGCGCAGCCTCTATGAGGATCTGTCGCAGGACTTCAACTACAACATCATGTTCAGCCCGCGCG
GCGTGATCATGCTGGCGCAGACCGAGCACGAGGTGCGTGGTTACAAGCGCACCGCCCATGCCAATGCGCTCCAGGGCGTG
TCGACCGAATGGATCGAACCCGCCCGCGTGAAGGAACTGGTGCCGATCATCAACCTCGAAGGTCCGCGCTATCCGGTCCT
TGGCGGGCTCTGGCAAGCGCGTGGCGGTACCGCCCGTCACGATGCGGTGGCCTGGGGCTATGCGCGGGCCTGCTCGGCGA
TGGGCATGGACATCATCCAGAAATGCGAAGTCACCAATGTTCGGACTGAAAACGGCCGCGTGGTAGGTGTCGACACCACC
AAAGGGGCGATCGACTGCGACAAGCTGGGCATGGTGGTTGCGGGCAACTGTTCGGTGCTGTCTGAAATGGCGGGCTTCCG
TCTGCCGGTGGAATCGGTGGCGCTGCAGGCGCTGGTCTCCGAGCCGATCAAACCCTGCATGGACGTGGTCGTGATGGCCA
ACACCGTGCATGGCTACATGTCGCAATCCGACAAGGGCGAGATGGTCATTGGTGGCGGCACCGACGGCTACAACAACTAC
ACCCAGCGCGGTTCTTTCCACCACATCGAGGAAACCGTGCGCGCCCTCAACGAGACTTTCCCGATGGTGTCGCGCCTCAA
GATGCTGCGCCAATGGGGTGGGATCGTGGATGTAACCGGCGACCGCTCGCCGCTGATTTCCAAAACGCCGGTTCAGAACT
GTTTTGTCAACGCTGGCTGGGGCACCGGCGGCTTCAAGGCGATCCCCGGCTCGGGCTGGGCGATGGCGGAACTGATGGCG
ACAGGGCATTCCAACCTCGCGGAAGAGTTCTCCATGATGCGCTTCAAAGAAGGCAAATTCATCGACGAGAGCGTCGCAGC
AGGGGTGGCACACTGA

Upstream 100 bases:

>100_bases
GGCGCGCCGAAAGCAAATGTCGCGCGCAATGGCGCGCGCGGAAACCTGTACGGCATGTCGCAAACCTGACGAAACGCGAC
GATTAACGGCGCGGGGTCCG

Downstream 100 bases:

>100_bases
TGACGACCCCGCTCACTTTTGCACCGGCCACCCCCACATCGGAGCACGCATCATGCTGATCCTCGACTGTCCTTATTGCG
GCGTTCGCGCCGAGGAAACC

Product: sarcosine oxidase beta subunit family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MRSRSYLEARHEALDSLMKRYSAFAVAREGLRYHSGWERAWRSPEPKRHYDVIIVGAGGHGLATAYYLGKNFGITNVAVI
EKGWLGGGNTGRNTTIIRSNYLQDPSAAIYEKSRSLYEDLSQDFNYNIMFSPRGVIMLAQTEHEVRGYKRTAHANALQGV
STEWIEPARVKELVPIINLEGPRYPVLGGLWQARGGTARHDAVAWGYARACSAMGMDIIQKCEVTNVRTENGRVVGVDTT
KGAIDCDKLGMVVAGNCSVLSEMAGFRLPVESVALQALVSEPIKPCMDVVVMANTVHGYMSQSDKGEMVIGGGTDGYNNY
TQRGSFHHIEETVRALNETFPMVSRLKMLRQWGGIVDVTGDRSPLISKTPVQNCFVNAGWGTGGFKAIPGSGWAMAELMA
TGHSNLAEEFSMMRFKEGKFIDESVAAGVAH

Sequences:

>Translated_431_residues
MRSRSYLEARHEALDSLMKRYSAFAVAREGLRYHSGWERAWRSPEPKRHYDVIIVGAGGHGLATAYYLGKNFGITNVAVI
EKGWLGGGNTGRNTTIIRSNYLQDPSAAIYEKSRSLYEDLSQDFNYNIMFSPRGVIMLAQTEHEVRGYKRTAHANALQGV
STEWIEPARVKELVPIINLEGPRYPVLGGLWQARGGTARHDAVAWGYARACSAMGMDIIQKCEVTNVRTENGRVVGVDTT
KGAIDCDKLGMVVAGNCSVLSEMAGFRLPVESVALQALVSEPIKPCMDVVVMANTVHGYMSQSDKGEMVIGGGTDGYNNY
TQRGSFHHIEETVRALNETFPMVSRLKMLRQWGGIVDVTGDRSPLISKTPVQNCFVNAGWGTGGFKAIPGSGWAMAELMA
TGHSNLAEEFSMMRFKEGKFIDESVAAGVAH
>Mature_431_residues
MRSRSYLEARHEALDSLMKRYSAFAVAREGLRYHSGWERAWRSPEPKRHYDVIIVGAGGHGLATAYYLGKNFGITNVAVI
EKGWLGGGNTGRNTTIIRSNYLQDPSAAIYEKSRSLYEDLSQDFNYNIMFSPRGVIMLAQTEHEVRGYKRTAHANALQGV
STEWIEPARVKELVPIINLEGPRYPVLGGLWQARGGTARHDAVAWGYARACSAMGMDIIQKCEVTNVRTENGRVVGVDTT
KGAIDCDKLGMVVAGNCSVLSEMAGFRLPVESVALQALVSEPIKPCMDVVVMANTVHGYMSQSDKGEMVIGGGTDGYNNY
TQRGSFHHIEETVRALNETFPMVSRLKMLRQWGGIVDVTGDRSPLISKTPVQNCFVNAGWGTGGFKAIPGSGWAMAELMA
TGHSNLAEEFSMMRFKEGKFIDESVAAGVAH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI194306651, Length=382, Percent_Identity=24.869109947644, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI197927446, Length=373, Percent_Identity=22.2520107238606, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI21361378, Length=373, Percent_Identity=22.2520107238606, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI24797151, Length=359, Percent_Identity=20.6128133704735, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI28571104, Length=384, Percent_Identity=22.65625, Blast_Score=72, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 47254; Mature: 47254

Theoretical pI: Translated: 8.14; Mature: 8.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSRSYLEARHEALDSLMKRYSAFAVAREGLRYHSGWERAWRSPEPKRHYDVIIVGAGGH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEEECCCC
GLATAYYLGKNFGITNVAVIEKGWLGGGNTGRNTTIIRSNYLQDPSAAIYEKSRSLYEDL
HHHHHEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
SQDFNYNIMFSPRGVIMLAQTEHEVRGYKRTAHANALQGVSTEWIEPARVKELVPIINLE
HHCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEECC
GPRYPVLGGLWQARGGTARHDAVAWGYARACSAMGMDIIQKCEVTNVRTENGRVVGVDTT
CCCCCHHCCHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCEEECCCCEEEEEECC
KGAIDCDKLGMVVAGNCSVLSEMAGFRLPVESVALQALVSEPIKPCMDVVVMANTVHGYM
CCCCCHHHCCEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQSDKGEMVIGGGTDGYNNYTQRGSFHHIEETVRALNETFPMVSRLKMLRQWGGIVDVTG
CCCCCCCEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
DRSPLISKTPVQNCFVNAGWGTGGFKAIPGSGWAMAELMATGHSNLAEEFSMMRFKEGKF
CCCCCCCCCCCCCCEEECCCCCCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCC
IDESVAAGVAH
CHHHHHHCCCC
>Mature Secondary Structure
MRSRSYLEARHEALDSLMKRYSAFAVAREGLRYHSGWERAWRSPEPKRHYDVIIVGAGGH
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEEECCCC
GLATAYYLGKNFGITNVAVIEKGWLGGGNTGRNTTIIRSNYLQDPSAAIYEKSRSLYEDL
HHHHHEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
SQDFNYNIMFSPRGVIMLAQTEHEVRGYKRTAHANALQGVSTEWIEPARVKELVPIINLE
HHCCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEECC
GPRYPVLGGLWQARGGTARHDAVAWGYARACSAMGMDIIQKCEVTNVRTENGRVVGVDTT
CCCCCHHCCHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHCCCCEEECCCCEEEEEECC
KGAIDCDKLGMVVAGNCSVLSEMAGFRLPVESVALQALVSEPIKPCMDVVVMANTVHGYM
CCCCCHHHCCEEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SQSDKGEMVIGGGTDGYNNYTQRGSFHHIEETVRALNETFPMVSRLKMLRQWGGIVDVTG
CCCCCCCEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECC
DRSPLISKTPVQNCFVNAGWGTGGFKAIPGSGWAMAELMATGHSNLAEEFSMMRFKEGKF
CCCCCCCCCCCCCCEEECCCCCCCCEECCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCC
IDESVAAGVAH
CHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]