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The map label for this gene is soxD [H]

Identifier: 99080811

GI number: 99080811

Start: 1037333

End: 1037665

Strand: Direct

Name: soxD [H]

Synonym: TM1040_0970

Alternate gene names: 99080811

Gene position: 1037333-1037665 (Clockwise)

Preceding gene: 99080810

Following gene: 99080812

Centisome position: 32.41

GC content: 62.76

Gene sequence:

>333_bases
ATGCTGATCCTCGACTGTCCTTATTGCGGCGTTCGCGCCGAGGAAACCGAACTCCATGGCGGCGGCGAAGCGCATCTGAA
ACGCTTCGGCCCCGGGTCCACGGATGATGAGTTCCACGACTACCTCTTCATGAAGGAAAACCCGCGCGGGGTGCATCTGG
AGCGCTGGCGCCATGTGAACGGCTGCGGCAAGTGGTTCCACGCAGCCCGCTGCACCCAGACGCTCGAGGTCTTTGGCACC
TACAGCGCCCAGACCACGGAGCCGCCGCAAGAGATCAAGGACAAGATCTCTGCCAAACGCCCCGGCTGGTCCTGGCGTGA
GTTCAAGGGCTGA

Upstream 100 bases:

>100_bases
GAAGGCAAATTCATCGACGAGAGCGTCGCAGCAGGGGTGGCACACTGATGACGACCCCGCTCACTTTTGCACCGGCCACC
CCCACATCGGAGCACGCATC

Downstream 100 bases:

>100_bases
TCCCACATGTTTCATCTTCTCCTAAATATCCCCGCCGGAGGCTCCCAGACCTCCTGCCGCGAAAGGGTCGCATCATGAGC
ACGCGTCTCGCCAAACAGGG

Product: sarcosine oxidase, delta subunit, heterotetrameric

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 110; Mature: 110

Protein sequence:

>110_residues
MLILDCPYCGVRAEETELHGGGEAHLKRFGPGSTDDEFHDYLFMKENPRGVHLERWRHVNGCGKWFHAARCTQTLEVFGT
YSAQTTEPPQEIKDKISAKRPGWSWREFKG

Sequences:

>Translated_110_residues
MLILDCPYCGVRAEETELHGGGEAHLKRFGPGSTDDEFHDYLFMKENPRGVHLERWRHVNGCGKWFHAARCTQTLEVFGT
YSAQTTEPPQEIKDKISAKRPGWSWREFKG
>Mature_110_residues
MLILDCPYCGVRAEETELHGGGEAHLKRFGPGSTDDEFHDYLFMKENPRGVHLERWRHVNGCGKWFHAARCTQTLEVFGT
YSAQTTEPPQEIKDKISAKRPGWSWREFKG

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 12666; Mature: 12666

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLILDCPYCGVRAEETELHGGGEAHLKRFGPGSTDDEFHDYLFMKENPRGVHLERWRHVN
CEEECCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCEEEEECCCCCCCCHHHHHCCC
GCGKWFHAARCTQTLEVFGTYSAQTTEPPQEIKDKISAKRPGWSWREFKG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLILDCPYCGVRAEETELHGGGEAHLKRFGPGSTDDEFHDYLFMKENPRGVHLERWRHVN
CEEECCCCCCCCCCCCCCCCCCHHHHEECCCCCCCCCCCEEEEECCCCCCCCHHHHHCCC
GCGKWFHAARCTQTLEVFGTYSAQTTEPPQEIKDKISAKRPGWSWREFKG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]