| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080806
Identifier: 99080806
GI number: 99080806
Start: 1032917
End: 1033714
Strand: Direct
Name: 99080806
Synonym: TM1040_0965
Alternate gene names: NA
Gene position: 1032917-1033714 (Clockwise)
Preceding gene: 99080805
Following gene: 99080810
Centisome position: 32.27
GC content: 62.66
Gene sequence:
>798_bases ATGACGGCAACCGAGGCTTACCTGCAAAAGGGCTGGCTGCGTTTTGCAGCAGAAGAGAGCATCAGAGATTGGGCCGCGCA CGCGCAGCGCTGTGCTGAGACGGCAACTGCAGACCCGGCCCATGCGAAGTGGCTGGATTGCGAAGGCACCTGGTTCATCG GTGTTGATGCCTTGCCGAACGATCCGGACGGACGCTTACCGTCCGGTCCGCCTCTCGAGGGGGCAGCGCTCGACTTCATT CGAGCACATTTTGGCGAAATCCCCGCCCTTCACAGGGCGCAGCTGTCGGTGATCTATCCGGGTTACCCCCGACCACGACG CGGCGAGAGCGACGCGGCCTTTGGCTACCGCTGCAAACGGGATGGCGCGCATGTGGACGGCATCAAGATATATGGCACCG CGCGCCGGCGACGGGTCGAAGAACCGCACGCTTGGGTTCTCGGTCTGCCGCTGAACAAAACCAGCAAGAACGCCGCGCCG CTGGTGGTTTGGGAGGGGAGCCATTTGATCATGCGCGAGGCCTTTCGCCTGGCGTTTGAGGGGATCGCTCTCGAGGACTG GGCCCATGTCGATATCACCGACATCTACACTGCAGCGCGGCGCGAGGTGTTTGAAACCTGCAAACGTGTTGAGGTGCATG CAAACCCCGGCGAAGCTTACCTCATGCACCGTCTCTGCCTGCATGGGGTCGCGCCTTGGGCCGATGGGGCCTCGGCCACG GATGGGGCAGGGCGGATGATCGCCTATTTCCGCCCCGAAATGCCGAACTGGCAGGCCCATTGGTTGAGCGACCTTTAG
Upstream 100 bases:
>100_bases GGCGGCGTCACCTCTCCGAGGGCGCACACCGCACCGGCGCGGGCCCAGAGCTTGTCGAAGAGGCCCTCTCCCTCGTGTTG GCGCGGGCGGCCTGAGGCAG
Downstream 100 bases:
>100_bases GCGCGGGCGCACACGCGCCCAGTCGCAGGCTCTGCCTGCATACCGCAACAGAACTGCTGATCGCAGCGCCCAGCTTCTTC TAATTCTAACGCAAAAATAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MTATEAYLQKGWLRFAAEESIRDWAAHAQRCAETATADPAHAKWLDCEGTWFIGVDALPNDPDGRLPSGPPLEGAALDFI RAHFGEIPALHRAQLSVIYPGYPRPRRGESDAAFGYRCKRDGAHVDGIKIYGTARRRRVEEPHAWVLGLPLNKTSKNAAP LVVWEGSHLIMREAFRLAFEGIALEDWAHVDITDIYTAARREVFETCKRVEVHANPGEAYLMHRLCLHGVAPWADGASAT DGAGRMIAYFRPEMPNWQAHWLSDL
Sequences:
>Translated_265_residues MTATEAYLQKGWLRFAAEESIRDWAAHAQRCAETATADPAHAKWLDCEGTWFIGVDALPNDPDGRLPSGPPLEGAALDFI RAHFGEIPALHRAQLSVIYPGYPRPRRGESDAAFGYRCKRDGAHVDGIKIYGTARRRRVEEPHAWVLGLPLNKTSKNAAP LVVWEGSHLIMREAFRLAFEGIALEDWAHVDITDIYTAARREVFETCKRVEVHANPGEAYLMHRLCLHGVAPWADGASAT DGAGRMIAYFRPEMPNWQAHWLSDL >Mature_264_residues TATEAYLQKGWLRFAAEESIRDWAAHAQRCAETATADPAHAKWLDCEGTWFIGVDALPNDPDGRLPSGPPLEGAALDFIR AHFGEIPALHRAQLSVIYPGYPRPRRGESDAAFGYRCKRDGAHVDGIKIYGTARRRRVEEPHAWVLGLPLNKTSKNAAPL VVWEGSHLIMREAFRLAFEGIALEDWAHVDITDIYTAARREVFETCKRVEVHANPGEAYLMHRLCLHGVAPWADGASATD GAGRMIAYFRPEMPNWQAHWLSDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29620; Mature: 29489
Theoretical pI: Translated: 6.65; Mature: 6.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATEAYLQKGWLRFAAEESIRDWAAHAQRCAETATADPAHAKWLDCEGTWFIGVDALPN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCC DPDGRLPSGPPLEGAALDFIRAHFGEIPALHRAQLSVIYPGYPRPRRGESDAAFGYRCKR CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECC DGAHVDGIKIYGTARRRRVEEPHAWVLGLPLNKTSKNAAPLVVWEGSHLIMREAFRLAFE CCCCCCCEEEEECHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHC GIALEDWAHVDITDIYTAARREVFETCKRVEVHANPGEAYLMHRLCLHGVAPWADGASAT CCEECCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCCCCCCCCCCC DGAGRMIAYFRPEMPNWQAHWLSDL CCCCCEEEEECCCCCCCHHHHCCCC >Mature Secondary Structure TATEAYLQKGWLRFAAEESIRDWAAHAQRCAETATADPAHAKWLDCEGTWFIGVDALPN CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCC DPDGRLPSGPPLEGAALDFIRAHFGEIPALHRAQLSVIYPGYPRPRRGESDAAFGYRCKR CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECC DGAHVDGIKIYGTARRRRVEEPHAWVLGLPLNKTSKNAAPLVVWEGSHLIMREAFRLAFE CCCCCCCEEEEECHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHC GIALEDWAHVDITDIYTAARREVFETCKRVEVHANPGEAYLMHRLCLHGVAPWADGASAT CCEECCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCCCCCCCCCCC DGAGRMIAYFRPEMPNWQAHWLSDL CCCCCEEEEECCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA