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The map label for this gene is scpB [H]

Identifier: 99080748

GI number: 99080748

Start: 968678

End: 969358

Strand: Direct

Name: scpB [H]

Synonym: TM1040_0907

Alternate gene names: 99080748

Gene position: 968678-969358 (Clockwise)

Preceding gene: 99080747

Following gene: 99080749

Centisome position: 30.26

GC content: 64.76

Gene sequence:

>681_bases
ATGGACGACCACACCCTCAGCGATACGGCCTCGCCAGAGCGTTCAGACAGCGACAGCCTGTTTGACGCGCCGCCCATGGC
CGAGCAGGAGCGTATGGTGGAGGCGGTGCTCTTTGCCAGCGCCGAGCCGGTGACGGTGCGCGATCTCATTGCGCGCATGC
CGCATGGCTGCAGACCCAGCGAGGCTCTGGAGCATCTGCGCAAACGCTACGAGGGCCGTGGGGTGCGGGTGGTGCAGGTT
GGCGAGGCCTGGGCGATGCGCACGGCGCCTGACCTTGGCTACCTGATGCAAAAGGAAACGGTGGAGACGCGCAAACTCTC
GCGTGCGGCCATCGAGACGCTGGCCATCATTGCCTATCACCAGCCGGTGACGCGAGCAGAAATCGAAGAAATCCGCGGTG
TGTCGGTGTCGCGCGGCACCATCGATCAACTCCTTGAGATGGAGTGGATCCGGCTGGGACGGCGCAAGATGACACCGGGA
CGGCCAGTGACCTTTGTGGTGACGCCGGTGTTTCTGGATCACTTCGGCCTCGAAAGCGCGCGTGATCTGCCCGGTCTCAA
GGAGCTGCGGGCTGCAGGGCTCCTGGAAAACAGGCCACCGCCGGGGGCCTTCCCGATCGGTCAGGGCGACAGCGAGGATG
AGCGCCGTGATGAAGAGCAGGCGGAGCTGTTCGAGGACTGA

Upstream 100 bases:

>100_bases
TTGCCGCGTCGCTGCAATTGGTTAAAGAAGGCAAGATGGAGATTCGCCAGACCGACAGTTTCGCCCCGATCCAGCTGCGC
AACCGGCCCGAGGATAGCTA

Downstream 100 bases:

>100_bases
CCCTGCACGCAAAAGCGCGGTAGAGGACGGTCCAGTGCGCGAGGGAATGCAGTGCCTCCCACAGCCCGCGCAAGAGACCC
CGCACGTCGGAGCCTGTCGC

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MDDHTLSDTASPERSDSDSLFDAPPMAEQERMVEAVLFASAEPVTVRDLIARMPHGCRPSEALEHLRKRYEGRGVRVVQV
GEAWAMRTAPDLGYLMQKETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLEMEWIRLGRRKMTPG
RPVTFVVTPVFLDHFGLESARDLPGLKELRAAGLLENRPPPGAFPIGQGDSEDERRDEEQAELFED

Sequences:

>Translated_226_residues
MDDHTLSDTASPERSDSDSLFDAPPMAEQERMVEAVLFASAEPVTVRDLIARMPHGCRPSEALEHLRKRYEGRGVRVVQV
GEAWAMRTAPDLGYLMQKETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLEMEWIRLGRRKMTPG
RPVTFVVTPVFLDHFGLESARDLPGLKELRAAGLLENRPPPGAFPIGQGDSEDERRDEEQAELFED
>Mature_226_residues
MDDHTLSDTASPERSDSDSLFDAPPMAEQERMVEAVLFASAEPVTVRDLIARMPHGCRPSEALEHLRKRYEGRGVRVVQV
GEAWAMRTAPDLGYLMQKETVETRKLSRAAIETLAIIAYHQPVTRAEIEEIRGVSVSRGTIDQLLEMEWIRLGRRKMTPG
RPVTFVVTPVFLDHFGLESARDLPGLKELRAAGLLENRPPPGAFPIGQGDSEDERRDEEQAELFED

Specific function: May participate in chromosomal partitioning during cell division (Potential) [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 25374; Mature: 25374

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDHTLSDTASPERSDSDSLFDAPPMAEQERMVEAVLFASAEPVTVRDLIARMPHGCRPS
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHH
EALEHLRKRYEGRGVRVVQVGEAWAMRTAPDLGYLMQKETVETRKLSRAAIETLAIIAYH
HHHHHHHHHHCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QPVTRAEIEEIRGVSVSRGTIDQLLEMEWIRLGRRKMTPGRPVTFVVTPVFLDHFGLESA
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCHH
RDLPGLKELRAAGLLENRPPPGAFPIGQGDSEDERRDEEQAELFED
HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDDHTLSDTASPERSDSDSLFDAPPMAEQERMVEAVLFASAEPVTVRDLIARMPHGCRPS
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHH
EALEHLRKRYEGRGVRVVQVGEAWAMRTAPDLGYLMQKETVETRKLSRAAIETLAIIAYH
HHHHHHHHHHCCCCEEEEEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
QPVTRAEIEEIRGVSVSRGTIDQLLEMEWIRLGRRKMTPGRPVTFVVTPVFLDHFGLESA
CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCHH
RDLPGLKELRAAGLLENRPPPGAFPIGQGDSEDERRDEEQAELFED
HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]