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The map label for this gene is agmR [H]

Identifier: 99080669

GI number: 99080669

Start: 869373

End: 869987

Strand: Reverse

Name: agmR [H]

Synonym: TM1040_0828

Alternate gene names: 99080669

Gene position: 869987-869373 (Counterclockwise)

Preceding gene: 99080670

Following gene: 99080659

Centisome position: 27.18

GC content: 52.03

Gene sequence:

>615_bases
ATGCGTGTGCTACTGGCCGATGACCATGATATGGTGCGTGAAGCGATTGCCGCTTACCTCACCGCTGACGGTGAAATCGA
TGTCAAGGCGGTCTGTGATGCCCACGCCGCATTCGATGCTATGCAGACCGACGTATCGTTCGATCTAGTCATTCTAGACT
ACCAGATGCCGGGTATGAACAGTATCGAGGTCCTGAAGAGAGCTCTCGTGGCAAATGGCGGGAAAGGTGTAGCTATTCTC
TCTGGTAGTGGCTCACCAGGTCTTGCAAAGGAAGTTCTTGACGCTGGGGCAGTCGGGTTTGTGCCCAAGACTATCAGTGG
CCTTACTCTTTTGAACGCAGTGAAGTTTATGTGCGCTGGCGAAATCTTTATCCCGCATGACTTGCTACGCGAGAGTACAG
TCGCACCAACTCACCCCCTCTTGGATGGTCTCAGCCCGCGGCAAATCCAAGTATTGGAGGGCGTGTGTAATGCCAAGACC
AACAAAGAAATTGCTCGTGAGCTGGAGCTGGAAGAAGTGACCATAAAGTTCCATGTTCGAACGTTATGCAGAAAGCTCGA
AGTCCAAAACCGAACACAGGCAGCTTTGGCTGCGAAGTCAGCCGGTTTGTTCTAG

Upstream 100 bases:

>100_bases
AGCCAAAAAGCTCGAGAGTTTGAATGACTAATCGTTCATCGGCCATTAATCCTCGATCAGTACTCTGAGCGCTCTGTTGA
GGTACTTTTGGGGGCAACTG

Downstream 100 bases:

>100_bases
CTAAACTCCACTTGATGAGCCAACTGGTCACAACCGATACACCACAGCTTCGCGGTGATCTGGTGAGCGATGATGATCCG
AATAGTGCATCAGCGCACAA

Product: two component LuxR family transcriptional regulator

Products: NA

Alternate protein names: Protein AgmR [H]

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MRVLLADDHDMVREAIAAYLTADGEIDVKAVCDAHAAFDAMQTDVSFDLVILDYQMPGMNSIEVLKRALVANGGKGVAIL
SGSGSPGLAKEVLDAGAVGFVPKTISGLTLLNAVKFMCAGEIFIPHDLLRESTVAPTHPLLDGLSPRQIQVLEGVCNAKT
NKEIARELELEEVTIKFHVRTLCRKLEVQNRTQAALAAKSAGLF

Sequences:

>Translated_204_residues
MRVLLADDHDMVREAIAAYLTADGEIDVKAVCDAHAAFDAMQTDVSFDLVILDYQMPGMNSIEVLKRALVANGGKGVAIL
SGSGSPGLAKEVLDAGAVGFVPKTISGLTLLNAVKFMCAGEIFIPHDLLRESTVAPTHPLLDGLSPRQIQVLEGVCNAKT
NKEIARELELEEVTIKFHVRTLCRKLEVQNRTQAALAAKSAGLF
>Mature_204_residues
MRVLLADDHDMVREAIAAYLTADGEIDVKAVCDAHAAFDAMQTDVSFDLVILDYQMPGMNSIEVLKRALVANGGKGVAIL
SGSGSPGLAKEVLDAGAVGFVPKTISGLTLLNAVKFMCAGEIFIPHDLLRESTVAPTHPLLDGLSPRQIQVLEGVCNAKT
NKEIARELELEEVTIKFHVRTLCRKLEVQNRTQAALAAKSAGLF

Specific function: Positive activator for glycerol metabolism [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=203, Percent_Identity=30.5418719211823, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1786747, Length=188, Percent_Identity=27.1276595744681, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1788222, Length=196, Percent_Identity=24.4897959183673, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1789937, Length=148, Percent_Identity=31.7567567567568, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788712, Length=191, Percent_Identity=27.2251308900524, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790102, Length=195, Percent_Identity=30.2564102564103, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21840; Mature: 21840

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVLLADDHDMVREAIAAYLTADGEIDVKAVCDAHAAFDAMQTDVSFDLVILDYQMPGMN
CEEEEECCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCC
SIEVLKRALVANGGKGVAILSGSGSPGLAKEVLDAGAVGFVPKTISGLTLLNAVKFMCAG
HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
EIFIPHDLLRESTVAPTHPLLDGLSPRQIQVLEGVCNAKTNKEIARELELEEVTIKFHVR
CEECCHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TLCRKLEVQNRTQAALAAKSAGLF
HHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure
MRVLLADDHDMVREAIAAYLTADGEIDVKAVCDAHAAFDAMQTDVSFDLVILDYQMPGMN
CEEEEECCHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCC
SIEVLKRALVANGGKGVAILSGSGSPGLAKEVLDAGAVGFVPKTISGLTLLNAVKFMCAG
HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
EIFIPHDLLRESTVAPTHPLLDGLSPRQIQVLEGVCNAKTNKEIARELELEEVTIKFHVR
CEECCHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
TLCRKLEVQNRTQAALAAKSAGLF
HHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938886; 10984043 [H]