Definition | Ruegeria sp. TM1040, complete genome. |
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Accession | NC_008044 |
Length | 3,200,938 |
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The map label for this gene is 99080659
Identifier: 99080659
GI number: 99080659
Start: 859121
End: 859564
Strand: Reverse
Name: 99080659
Synonym: TM1040_0818
Alternate gene names: NA
Gene position: 859564-859121 (Counterclockwise)
Preceding gene: 99080669
Following gene: 99080658
Centisome position: 26.85
GC content: 54.5
Gene sequence:
>444_bases TTGACCCTCGTCGCGGATGCGGCGCGGGCAGGAGATTATTGGATGCGGAAAATTCTAATTGCGGTAGCTACCGTGGGTGC TATTGGTTTTGCCCCATCGAACGCGCTAGGCGCGCCCAAACTAGATGAACTTGGTAGCGATGTTTCACTCTGCTGGAACG ACGAGGCGCTGAGCGACGACGCGGCCAGAGCCACGACAACCGTGGAATTCCATGTGGGACAAGATGGACTGGTGGATCTG AACACCATCAAGATTGTTTCCAGCACTGCGATCACTCAAACAGCGTCCAAGCAAGCCTTTGAAGCCGCTCGCAGGGCTAT AATCAGATGCCTGATGTCAGATCCGGTTGATTTGTCTTTCTGGGACACCACCTTGGAAGCGGTCTTTTCTGTCGCCACGG GTGTCAAAGTTCGCTACCAGCCCAACACCACGGTAGACACATGA
Upstream 100 bases:
>100_bases GCGCACAAACCGGCCCAGCTCATCGCGGGCGCGAACCACTGGTTGGCTATCGACAGCAATGCCGAGACGTGCAAAGTCGG TCATTTAGGCCTCACTGAGT
Downstream 100 bases:
>100_bases TGGATCGGGGCAATGTCGCATCACTATCCACCCTGCAGATTGACCAAATGGAAGAAAGGAAGCACGACACTGATTATCAG CTGTCGCTCTGCCGGAGCAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MTLVADAARAGDYWMRKILIAVATVGAIGFAPSNALGAPKLDELGSDVSLCWNDEALSDDAARATTTVEFHVGQDGLVDL NTIKIVSSTAITQTASKQAFEAARRAIIRCLMSDPVDLSFWDTTLEAVFSVATGVKVRYQPNTTVDT
Sequences:
>Translated_147_residues MTLVADAARAGDYWMRKILIAVATVGAIGFAPSNALGAPKLDELGSDVSLCWNDEALSDDAARATTTVEFHVGQDGLVDL NTIKIVSSTAITQTASKQAFEAARRAIIRCLMSDPVDLSFWDTTLEAVFSVATGVKVRYQPNTTVDT >Mature_146_residues TLVADAARAGDYWMRKILIAVATVGAIGFAPSNALGAPKLDELGSDVSLCWNDEALSDDAARATTTVEFHVGQDGLVDLN TIKIVSSTAITQTASKQAFEAARRAIIRCLMSDPVDLSFWDTTLEAVFSVATGVKVRYQPNTTVDT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15668; Mature: 15537
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLVADAARAGDYWMRKILIAVATVGAIGFAPSNALGAPKLDELGSDVSLCWNDEALSDD CCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCC AARATTTVEFHVGQDGLVDLNTIKIVSSTAITQTASKQAFEAARRAIIRCLMSDPVDLSF CCCEEEEEEEEECCCCCEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH WDTTLEAVFSVATGVKVRYQPNTTVDT HHHHHHHHHHHHCCCEEEECCCCCCCC >Mature Secondary Structure TLVADAARAGDYWMRKILIAVATVGAIGFAPSNALGAPKLDELGSDVSLCWNDEALSDD CEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCEEEECCCCCCCC AARATTTVEFHVGQDGLVDLNTIKIVSSTAITQTASKQAFEAARRAIIRCLMSDPVDLSF CCCEEEEEEEEECCCCCEECCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH WDTTLEAVFSVATGVKVRYQPNTTVDT HHHHHHHHHHHHCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA