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The map label for this gene is lrrA [H]

Identifier: 94985792

GI number: 94985792

Start: 1799106

End: 1800095

Strand: Reverse

Name: lrrA [H]

Synonym: Dgeo_1692

Alternate gene names: 94985792

Gene position: 1800095-1799106 (Counterclockwise)

Preceding gene: 94985799

Following gene: 94985789

Centisome position: 72.96

GC content: 72.22

Gene sequence:

>990_bases
ATGGCTGACCGCTCCTTACTGCCTCCGGGACAGGTCCATTCGCCGGCGCCCTCACTCGCGCAGCTGCGGGCCTTGATCGC
CGTCGTGGATGCGGGGGGCTTTGGGGAGGCGGCGGCAGAACTGGGGGTTTCGCAGTCCTCGCTGAGTGAGGCGGTGGCCC
GGCTGGAGGCGCTGGCAGGCCGCCCACTGCTGCGGCGCACCCCGACCGGGACGTTGCCAACCGAGGCGGGTATACGGGCG
CTGGCCCACGCGCGGGCCGCTGTGCAGGCTGCCACCGACGCGCTGCTGGCCGCCCAGGAGGAGGGATCCCTCTCGGGCAC
GCTGCGGGTTGCGTCCCTGCGGTCCACCGCCACCCACCTGTTGCCGCCCGCCCTGGCGGCCTTTCGTGCGCGCCATCCAG
GGGTGGCCATCACCGTCTTCGATTCGGAGGCGTGCGGGGGCGGCGCTCAGGCTGTGCGCGCGGGGCGGGTCGATGTTGGG
CTGATTGTGAGTGAGGACGCCACGGACCTGCGCCTTTTGCCGCTCCCGCCCGACGAGTACCTGTTTGTCGCGCCCGCCTC
ACGCGGGCAGCATCCGGTCAGCTGCGCAGAGTTGGCGGCGCAACCGCTGATCCTGCCGCCCCAGCGCGACCCCTGTTACC
AGCGGGTGCGCGGTTACCTCACCGCCCGGGGCGTGCCGCTGACCCAAGTGATGGAGGTCGAGCAGGACAGCGTGACGCTC
TCGATGGTGGGGCACGGTCTGGGCGTGACGGTGATGCCGCAGCTGGCGCTGCTCCCCCTCCCGCCCGGCCTGGTCGCGCT
GCCGCTGCCCGAACCCCTCACTCGGCCACTGGCGCTTGCCGTGCTGCCGCATCGGGCCGCCCTCCCGTTGCTGCGGGCCT
TTAGCGGGGTGGTGCTGGAAACAGTCAACAGACTCAAGGCCCCGCAGGGAGCTGGGGAGACGCTGAACCCTGCGCCTGCT
GCGTCCCCCCTGCGGTCCGCGCCCAACTGA

Upstream 100 bases:

>100_bases
CCGGTGGAGCCCGTCAAGCCATCGGTCGCCGGAGACATGACCCTGGCCAGGCATCGGCTCAGCCGATGGAGTGGCCGCCG
CACCGAACTACAATCAAAAG

Downstream 100 bases:

>100_bases
TCGGCAAAAACTGATCGGCAAAGAAAAGCAGGCCGGCCCGCCGCCAGCCTGCCCAGAGAAGCGGGACTTCAGCCTTCGAA
GGGTTTCCCCAGTGCCTTGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MADRSLLPPGQVHSPAPSLAQLRALIAVVDAGGFGEAAAELGVSQSSLSEAVARLEALAGRPLLRRTPTGTLPTEAGIRA
LAHARAAVQAATDALLAAQEEGSLSGTLRVASLRSTATHLLPPALAAFRARHPGVAITVFDSEACGGGAQAVRAGRVDVG
LIVSEDATDLRLLPLPPDEYLFVAPASRGQHPVSCAELAAQPLILPPQRDPCYQRVRGYLTARGVPLTQVMEVEQDSVTL
SMVGHGLGVTVMPQLALLPLPPGLVALPLPEPLTRPLALAVLPHRAALPLLRAFSGVVLETVNRLKAPQGAGETLNPAPA
ASPLRSAPN

Sequences:

>Translated_329_residues
MADRSLLPPGQVHSPAPSLAQLRALIAVVDAGGFGEAAAELGVSQSSLSEAVARLEALAGRPLLRRTPTGTLPTEAGIRA
LAHARAAVQAATDALLAAQEEGSLSGTLRVASLRSTATHLLPPALAAFRARHPGVAITVFDSEACGGGAQAVRAGRVDVG
LIVSEDATDLRLLPLPPDEYLFVAPASRGQHPVSCAELAAQPLILPPQRDPCYQRVRGYLTARGVPLTQVMEVEQDSVTL
SMVGHGLGVTVMPQLALLPLPPGLVALPLPEPLTRPLALAVLPHRAALPLLRAFSGVVLETVNRLKAPQGAGETLNPAPA
ASPLRSAPN
>Mature_328_residues
ADRSLLPPGQVHSPAPSLAQLRALIAVVDAGGFGEAAAELGVSQSSLSEAVARLEALAGRPLLRRTPTGTLPTEAGIRAL
AHARAAVQAATDALLAAQEEGSLSGTLRVASLRSTATHLLPPALAAFRARHPGVAITVFDSEACGGGAQAVRAGRVDVGL
IVSEDATDLRLLPLPPDEYLFVAPASRGQHPVSCAELAAQPLILPPQRDPCYQRVRGYLTARGVPLTQVMEVEQDSVTLS
MVGHGLGVTVMPQLALLPLPPGLVALPLPEPLTRPLALAVLPHRAALPLLRAFSGVVLETVNRLKAPQGAGETLNPAPAA
SPLRSAPN

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788748, Length=297, Percent_Identity=25.9259259259259, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788887, Length=248, Percent_Identity=29.4354838709677, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788297, Length=249, Percent_Identity=27.710843373494, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790208, Length=300, Percent_Identity=26.3333333333333, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789204, Length=301, Percent_Identity=26.9102990033223, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33902; Mature: 33770

Theoretical pI: Translated: 7.65; Mature: 7.65

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRSLLPPGQVHSPAPSLAQLRALIAVVDAGGFGEAAAELGVSQSSLSEAVARLEALAG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHC
RPLLRRTPTGTLPTEAGIRALAHARAAVQAATDALLAAQEEGSLSGTLRVASLRSTATHL
CCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHH
LPPALAAFRARHPGVAITVFDSEACGGGAQAVRAGRVDVGLIVSEDATDLRLLPLPPDEY
CCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCE
LFVAPASRGQHPVSCAELAAQPLILPPQRDPCYQRVRGYLTARGVPLTQVMEVEQDSVTL
EEEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCEEE
SMVGHGLGVTVMPQLALLPLPPGLVALPLPEPLTRPLALAVLPHRAALPLLRAFSGVVLE
EECCCCCCEEECCCEEEEECCCCCEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
TVNRLKAPQGAGETLNPAPAASPLRSAPN
HHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADRSLLPPGQVHSPAPSLAQLRALIAVVDAGGFGEAAAELGVSQSSLSEAVARLEALAG
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHC
RPLLRRTPTGTLPTEAGIRALAHARAAVQAATDALLAAQEEGSLSGTLRVASLRSTATHL
CCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHH
LPPALAAFRARHPGVAITVFDSEACGGGAQAVRAGRVDVGLIVSEDATDLRLLPLPPDEY
CCHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCCCEEEEEEECCCCCEEEEECCCCCE
LFVAPASRGQHPVSCAELAAQPLILPPQRDPCYQRVRGYLTARGVPLTQVMEVEQDSVTL
EEEECCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCEEE
SMVGHGLGVTVMPQLALLPLPPGLVALPLPEPLTRPLALAVLPHRAALPLLRAFSGVVLE
EECCCCCCEEECCCEEEEECCCCCEEECCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHH
TVNRLKAPQGAGETLNPAPAASPLRSAPN
HHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8661945 [H]