| Definition | Deinococcus geothermalis DSM 11300, complete genome. |
|---|---|
| Accession | NC_008025 |
| Length | 2,467,205 |
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The map label for this gene is comEC [H]
Identifier: 94985679
GI number: 94985679
Start: 1679732
End: 1682383
Strand: Reverse
Name: comEC [H]
Synonym: Dgeo_1579
Alternate gene names: 94985679
Gene position: 1682383-1679732 (Counterclockwise)
Preceding gene: 94985682
Following gene: 94985676
Centisome position: 68.19
GC content: 70.63
Gene sequence:
>2652_bases ATGTGCGCCTTCCGCACTGCCCGGCCCAACGTACACTGCCCCCGTGTTCACCTCCGAACGCCGCTGGATCCTGGTGCTTG TCGGCGGGCTGCTGGTTGTGGCGGGGTTGACGCTTGGCCCGGCCTTTTTCCCAGTCGCCCACGCGCCCACCGTCACCCGG GTGGACCTGCCGCCTCCCGCGCAGCCGGGGACGGTCCCGCCCGAATATCCCACCACTGCCAGCGTGCACCCGCTCATTTC TGGCCGGGTCAACCTGAATTCGGCCAGTCTGGAAGAGCTGGAGGCGTTGCCGAAAGTCGGGACAGCCTTGGCCGCACGGA TCGTGGCAGGGCGGCCGTACCGCAGCCTGGCGGACTTGGACCGGGTGAAGGGGATTGGTCCCTCCACCCTCAAGGCCCTT GCCCCCCTCGTGACCTTTTGATGACCGGGCACTCCACTGTGGCCTCTGCTGCTTCCCGGACCGCCCGCAGCACGCGCGCC CCCGCGGGCCGTCTGGCCTGGCCGGTGCCGCTCGCGTTCGGTGTAATGGGCGGCATCCTGCTGGGCCTGGGGGTGTGGTG GGGCGCTTTGGTGCTGCTGGCCGGTACAGTCTTCGCGGTGCTGGATGGCCGGACAGCCCTGGCCGGGTTGGCGCTGGCCG GTGGAGGGCTGGGCTTCGGCGCAGAACGTCTGAACGCCGCGCAACCCGACCGGATGTCCCCTTGGGTCGGCGCGCCGGTC ACCCTTGTCGGTGACTGGGACGGTCAATTCCTGCGCCTCTCCGATCCACCCGCACGAGTGGCGCTTTCTCCCAAACCGCG TGTTTTGCCGGGGCGGTTGGTCGTGAGTGGACGGCTGGTTCGTCCGGAGGGACGGCACGTACCGGGTGGTTTCGACCAGG CGGCCTGGTTGCGGGGACAGGGCGGCTTGTTCGTGCCGACGCCAACGATCGTCCTGGTTGCGGCGCGGGTTCGCTCGTCC ACCCCCGAGGGCGGCGTGCGCGGCTGGTTTCGCCGGGGCCTCACCGCGGGGCTGGGCGAGCGCCAGGCCGCCCTGATGCA GGCGATTGAGCTGGGTGACCGGAACGAGATCCGCCGCGAGGATTTCGCGGAAGGCTACCGCGTACAGGAGGCGTTCGCCC GTGCGGGCCTCTCGCACCTGATGGCCCTCAGCGGACAAAATGTGGGGTTGCTGACGGGTGCGGTGGTCTGGCTGCTGTCT TGGCTACGAGTGCCTCTGGGCTGGCGGTACGGGGCGGCCCTGCTCTTTCTCGCGCCGTACCTCTTGCTGGTTGGGGTCTC GCCTAGCCTCCTCCGGGCGGTGCTGATGGGAGGTGCGGTGCTGGCGGGCTACGCGCTGGGACGGGGGCGGCTGGACCCCT ACGGGACGCTTGCCCTCGCCGCCGTCCTGTGTCTGCTGCTCTTTCCTCGGTGGCTGCTGGACGTGGGCTTTCAACTGTCG TTCCTGGCCGTGCTGGGACTGACCCTCTCGGCGCGACTGGCAGAGCGGCTCCCCGCCCGCTGGCCCCGCTGGCTCCGTCT CCCGCTGGCGGCAACCCTGCTGGCCGAACTCGCCACGCTGCCCGTGGTCGCGGGAACGTTTGGGCAGCTTCCGCTGGTGG GCCTGCCCGCCAACCTGCTTGCGGGCGCGCTGATGGCGGCGCTGGTGCCGTTGGGCTTTGTGGCTGGGTTGCTGGGGCCG TTTGCGCTGGCCGTCAACTGGCTCACCGGCCTGCTGGCCTCGCTGCTCCTGGGGGTGGTGGCGCTGTTTGGCCGGGCCCC CGTGCTCACCTGGGGGACGGTGGGCGCCGGGGGCTGCGTGGCTTACGGCGCTGCGGCTCTGGCGGGCGTGCTGTGGCTGC GGGGCCGCGTGCGTGCGCCCGTCGCTCTGGGCACACTGCTCGCCTGCGCCGTCCTGACCCTGCTCCCGGGCCTGCTGCGG CCCGCCCGCGAACTGGTGTTTCTCGATGTCGGCCAGGGGGACAGCACCCTGATCCGGGCACGGGGCCTGAGCGTGCTGGT GGACGGCGGGGGTTCGGTTGGCTCGGATTTCGATGTGGGAACCCGAACAGTGGTTCCCGCCCTGCGTGCTCTGGGCGTTC GTGCGCTGGATGTGGTGGTCGCGACCCACGCCGACACCGACCATATCGAGGGCCTCTCTGGCGTGCTGCGGGCCCTCCCG GTCGGTGAACTGTGGATCGGGCGGCGCAAGACGGATGACCCTGTTCTGGCCGAACTCCTGCAGGCAGCGCGGGAAAGAGG GGTGCCGGTCCGCGAGGTGCGGCGCGGCGACCGGGTGAGCGTGGACGGCGTGACACTCACGGTCCTTTGGCCGCCTGGCC GCTTCTGGTCCACCCAGGACAACGACAACAGCGTCGCGCTCACCGTCGAGTCCCGCGGCTTCCGCGCCGCCCTCCTCGGC GACCTCCCCGACCCAGCCGAGGCGCAGATCGGCGTGGGCAAGCTCGATCTGCTGAAAGCCGCGCACCACGGCAGCCGCCA CAGCACCGGCGAGGCCATCCTGAAGGAAAGCACCCCGCACGACGTGCTGATCAGCGTGGGGCGCAACACCTACGGCCACC CACACCCCGACGTGCTGAAGCGTATTGGGGAGGTAGGTGCGAAGGTCTGGCGGACGGACCAGCTGGGAACCGTCCGCTGG CCGCTGCCCTGA
Upstream 100 bases:
>100_bases ACGATGGCCAGGGCCAGGAGGACAGCGGGTGTGAGGCGAGCGCTGCGGGCGGCAAGAGACGTCACCGGAAGAGCATACCC GCCCACCGGGGGAATGCCGC
Downstream 100 bases:
>100_bases GTCGTCAGCGCTCGACCGGAACCTGCCGCCCTTCCCGCGCCGCCGCGAACAGGGCGTCGAGCACCCGCGCCTGCCGCACG GCGTCCTGGGGCGGATAGAG
Product: DNA internalization-related competence protein ComEC/Rec2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 883; Mature: 883
Protein sequence:
>883_residues MCAFRTARPNVHCPRVHLRTPLDPGACRRAAGCGGVDAWPGLFPSRPRAHRHPGGPAASRAAGDGPARISHHCQRAPAHF WPGQPEFGQSGRAGGVAESRDSLGRTDRGRAAVPQPGGLGPGEGDWSLHPQGPCPPRDLLMTGHSTVASAASRTARSTRA PAGRLAWPVPLAFGVMGGILLGLGVWWGALVLLAGTVFAVLDGRTALAGLALAGGGLGFGAERLNAAQPDRMSPWVGAPV TLVGDWDGQFLRLSDPPARVALSPKPRVLPGRLVVSGRLVRPEGRHVPGGFDQAAWLRGQGGLFVPTPTIVLVAARVRSS TPEGGVRGWFRRGLTAGLGERQAALMQAIELGDRNEIRREDFAEGYRVQEAFARAGLSHLMALSGQNVGLLTGAVVWLLS WLRVPLGWRYGAALLFLAPYLLLVGVSPSLLRAVLMGGAVLAGYALGRGRLDPYGTLALAAVLCLLLFPRWLLDVGFQLS FLAVLGLTLSARLAERLPARWPRWLRLPLAATLLAELATLPVVAGTFGQLPLVGLPANLLAGALMAALVPLGFVAGLLGP FALAVNWLTGLLASLLLGVVALFGRAPVLTWGTVGAGGCVAYGAAALAGVLWLRGRVRAPVALGTLLACAVLTLLPGLLR PARELVFLDVGQGDSTLIRARGLSVLVDGGGSVGSDFDVGTRTVVPALRALGVRALDVVVATHADTDHIEGLSGVLRALP VGELWIGRRKTDDPVLAELLQAARERGVPVREVRRGDRVSVDGVTLTVLWPPGRFWSTQDNDNSVALTVESRGFRAALLG DLPDPAEAQIGVGKLDLLKAAHHGSRHSTGEAILKESTPHDVLISVGRNTYGHPHPDVLKRIGEVGAKVWRTDQLGTVRW PLP
Sequences:
>Translated_883_residues MCAFRTARPNVHCPRVHLRTPLDPGACRRAAGCGGVDAWPGLFPSRPRAHRHPGGPAASRAAGDGPARISHHCQRAPAHF WPGQPEFGQSGRAGGVAESRDSLGRTDRGRAAVPQPGGLGPGEGDWSLHPQGPCPPRDLLMTGHSTVASAASRTARSTRA PAGRLAWPVPLAFGVMGGILLGLGVWWGALVLLAGTVFAVLDGRTALAGLALAGGGLGFGAERLNAAQPDRMSPWVGAPV TLVGDWDGQFLRLSDPPARVALSPKPRVLPGRLVVSGRLVRPEGRHVPGGFDQAAWLRGQGGLFVPTPTIVLVAARVRSS TPEGGVRGWFRRGLTAGLGERQAALMQAIELGDRNEIRREDFAEGYRVQEAFARAGLSHLMALSGQNVGLLTGAVVWLLS WLRVPLGWRYGAALLFLAPYLLLVGVSPSLLRAVLMGGAVLAGYALGRGRLDPYGTLALAAVLCLLLFPRWLLDVGFQLS FLAVLGLTLSARLAERLPARWPRWLRLPLAATLLAELATLPVVAGTFGQLPLVGLPANLLAGALMAALVPLGFVAGLLGP FALAVNWLTGLLASLLLGVVALFGRAPVLTWGTVGAGGCVAYGAAALAGVLWLRGRVRAPVALGTLLACAVLTLLPGLLR PARELVFLDVGQGDSTLIRARGLSVLVDGGGSVGSDFDVGTRTVVPALRALGVRALDVVVATHADTDHIEGLSGVLRALP VGELWIGRRKTDDPVLAELLQAARERGVPVREVRRGDRVSVDGVTLTVLWPPGRFWSTQDNDNSVALTVESRGFRAALLG DLPDPAEAQIGVGKLDLLKAAHHGSRHSTGEAILKESTPHDVLISVGRNTYGHPHPDVLKRIGEVGAKVWRTDQLGTVRW PLP >Mature_883_residues MCAFRTARPNVHCPRVHLRTPLDPGACRRAAGCGGVDAWPGLFPSRPRAHRHPGGPAASRAAGDGPARISHHCQRAPAHF WPGQPEFGQSGRAGGVAESRDSLGRTDRGRAAVPQPGGLGPGEGDWSLHPQGPCPPRDLLMTGHSTVASAASRTARSTRA PAGRLAWPVPLAFGVMGGILLGLGVWWGALVLLAGTVFAVLDGRTALAGLALAGGGLGFGAERLNAAQPDRMSPWVGAPV TLVGDWDGQFLRLSDPPARVALSPKPRVLPGRLVVSGRLVRPEGRHVPGGFDQAAWLRGQGGLFVPTPTIVLVAARVRSS TPEGGVRGWFRRGLTAGLGERQAALMQAIELGDRNEIRREDFAEGYRVQEAFARAGLSHLMALSGQNVGLLTGAVVWLLS WLRVPLGWRYGAALLFLAPYLLLVGVSPSLLRAVLMGGAVLAGYALGRGRLDPYGTLALAAVLCLLLFPRWLLDVGFQLS FLAVLGLTLSARLAERLPARWPRWLRLPLAATLLAELATLPVVAGTFGQLPLVGLPANLLAGALMAALVPLGFVAGLLGP FALAVNWLTGLLASLLLGVVALFGRAPVLTWGTVGAGGCVAYGAAALAGVLWLRGRVRAPVALGTLLACAVLTLLPGLLR PARELVFLDVGQGDSTLIRARGLSVLVDGGGSVGSDFDVGTRTVVPALRALGVRALDVVVATHADTDHIEGLSGVLRALP VGELWIGRRKTDDPVLAELLQAARERGVPVREVRRGDRVSVDGVTLTVLWPPGRFWSTQDNDNSVALTVESRGFRAALLG DLPDPAEAQIGVGKLDLLKAAHHGSRHSTGEAILKESTPHDVLISVGRNTYGHPHPDVLKRIGEVGAKVWRTDQLGTVRW PLP
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 92715; Mature: 92715
Theoretical pI: Translated: 11.38; Mature: 11.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MCAFRTARPNVHCPRVHLRTPLDPGACRRAAGCGGVDAWPGLFPSRPRAHRHPGGPAASR CCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AAGDGPARISHHCQRAPAHFWPGQPEFGQSGRAGGVAESRDSLGRTDRGRAAVPQPGGLG CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC PGEGDWSLHPQGPCPPRDLLMTGHSTVASAASRTARSTRAPAGRLAWPVPLAFGVMGGIL CCCCCCCCCCCCCCCHHHHEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH LGLGVWWGALVLLAGTVFAVLDGRTALAGLALAGGGLGFGAERLNAAQPDRMSPWVGAPV HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCE TLVGDWDGQFLRLSDPPARVALSPKPRVLPGRLVVSGRLVRPEGRHVPGGFDQAAWLRGQ EEEECCCCCEEEECCCCCEEEECCCCCCCCCEEEEECEEECCCCCCCCCCCCCHHEEECC GGLFVPTPTIVLVAARVRSSTPEGGVRGWFRRGLTAGLGERQAALMQAIELGDRNEIRRE CCEECCCHHHHHHHHHHHCCCCCCHHHHHHHHCHHCCCCHHHHHHHHHHHCCCCHHHHHH DFAEGYRVQEAFARAGLSHLMALSGQNVGLLTGAVVWLLSWLRVPLGWRYGAALLFLAPY HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH LLLVGVSPSLLRAVLMGGAVLAGYALGRGRLDPYGTLALAAVLCLLLFPRWLLDVGFQLS HHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH FLAVLGLTLSARLAERLPARWPRWLRLPLAATLLAELATLPVVAGTFGQLPLVGLPANLL HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH AGALMAALVPLGFVAGLLGPFALAVNWLTGLLASLLLGVVALFGRAPVLTWGTVGAGGCV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH AYGAAALAGVLWLRGRVRAPVALGTLLACAVLTLLPGLLRPARELVFLDVGQGDSTLIRA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEE RGLSVLVDGGGSVGSDFDVGTRTVVPALRALGVRALDVVVATHADTDHIEGLSGVLRALP CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCHHHHHEEEEECCCHHHHHHHHHHHHHCC VGELWIGRRKTDDPVLAELLQAARERGVPVREVRRGDRVSVDGVTLTVLWPPGRFWSTQD CCHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCEEECCEEEEEEECCCCCCCCCC NDNSVALTVESRGFRAALLGDLPDPAEAQIGVGKLDLLKAAHHGSRHSTGEAILKESTPH CCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCCC DVLISVGRNTYGHPHPDVLKRIGEVGAKVWRTDQLGTVRWPLP CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCC >Mature Secondary Structure MCAFRTARPNVHCPRVHLRTPLDPGACRRAAGCGGVDAWPGLFPSRPRAHRHPGGPAASR CCCCCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC AAGDGPARISHHCQRAPAHFWPGQPEFGQSGRAGGVAESRDSLGRTDRGRAAVPQPGGLG CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCC PGEGDWSLHPQGPCPPRDLLMTGHSTVASAASRTARSTRAPAGRLAWPVPLAFGVMGGIL CCCCCCCCCCCCCCCHHHHEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH LGLGVWWGALVLLAGTVFAVLDGRTALAGLALAGGGLGFGAERLNAAQPDRMSPWVGAPV HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCE TLVGDWDGQFLRLSDPPARVALSPKPRVLPGRLVVSGRLVRPEGRHVPGGFDQAAWLRGQ EEEECCCCCEEEECCCCCEEEECCCCCCCCCEEEEECEEECCCCCCCCCCCCCHHEEECC GGLFVPTPTIVLVAARVRSSTPEGGVRGWFRRGLTAGLGERQAALMQAIELGDRNEIRRE CCEECCCHHHHHHHHHHHCCCCCCHHHHHHHHCHHCCCCHHHHHHHHHHHCCCCHHHHHH DFAEGYRVQEAFARAGLSHLMALSGQNVGLLTGAVVWLLSWLRVPLGWRYGAALLFLAPY HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH LLLVGVSPSLLRAVLMGGAVLAGYALGRGRLDPYGTLALAAVLCLLLFPRWLLDVGFQLS HHHHCCCHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHH FLAVLGLTLSARLAERLPARWPRWLRLPLAATLLAELATLPVVAGTFGQLPLVGLPANLL HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH AGALMAALVPLGFVAGLLGPFALAVNWLTGLLASLLLGVVALFGRAPVLTWGTVGAGGCV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH AYGAAALAGVLWLRGRVRAPVALGTLLACAVLTLLPGLLRPARELVFLDVGQGDSTLIRA HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEE RGLSVLVDGGGSVGSDFDVGTRTVVPALRALGVRALDVVVATHADTDHIEGLSGVLRALP CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCHHHHHEEEEECCCHHHHHHHHHHHHHCC VGELWIGRRKTDDPVLAELLQAARERGVPVREVRRGDRVSVDGVTLTVLWPPGRFWSTQD CCHHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCEEECCEEEEEEECCCCCCCCCC NDNSVALTVESRGFRAALLGDLPDPAEAQIGVGKLDLLKAAHHGSRHSTGEAILKESTPH CCCEEEEEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHCCCCC DVLISVGRNTYGHPHPDVLKRIGEVGAKVWRTDQLGTVRWPLP CEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]