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The map label for this gene is oprF [H]

Identifier: 93005425

GI number: 93005425

Start: 710102

End: 710686

Strand: Direct

Name: oprF [H]

Synonym: Pcryo_0595

Alternate gene names: 93005425

Gene position: 710102-710686 (Clockwise)

Preceding gene: 93005424

Following gene: 93005426

Centisome position: 23.21

GC content: 38.8

Gene sequence:

>585_bases
ATGAAAATGCTATTAAGAAATACGCTTGTCGTTTTAGTCAGCGCTTTAACATTATCCGCCTGTCAAACCGCCGATTTTTC
TAAGCAAACAAGTCAAACTATCAACATGCCAACGGTTGCGGTTAATTTGGATAGTGACGGCGATGGCGTTCCTAATAAGT
TAGATCAGTGCCCGAATACGCCAGAAAACGTAGTAGTAGATGACAGAGGCTGTCCGCATTCCTTACTTTTTGGTGAAAAC
GAATTTATGATGGAAGCTAGAGCCTACTATGACGAAAATAGTAGTGAGATAAAAAGTGAGTATTATGAACAGCTAGATAA
CGCAGGTAAAAAAATGCAAGATCATTTGGACGCTGTCATGCATATCGAAGGGCATATATCCAAGCGTGAAGACAATAATG
CCAATCAAACACTATCAAGATACCGGGTGGAAGAAATTAAAAATTATATGACCATGACATATAATATTGATCCTGATCGT
ATTAAGACCATTTACTATGGATCAGAGCGCCCAATTGCGACAAATGATGCCGAAAACAGTTGGCTCAATCAGCGTATTTA
TGCGCTTATTAGCAATGTTGAATAA

Upstream 100 bases:

>100_bases
GCAAGGCGTTAAATGCCAATGATTTTTATGCAGGCAGTGTTCGCGAGCAGTCACTCACGTACTATAAAGAATTCTGTCAG
CAATTTTAAAGGTATCATTT

Downstream 100 bases:

>100_bases
TATATTAAGCGTTTCAAAAAGATTGAAAATAAAGAATATGTGATAATTGAAAAAGGACGTTGATATGAAAGCAATTTTAT
ATTTAGTCAGCATTACTCTT

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MKMLLRNTLVVLVSALTLSACQTADFSKQTSQTINMPTVAVNLDSDGDGVPNKLDQCPNTPENVVVDDRGCPHSLLFGEN
EFMMEARAYYDENSSEIKSEYYEQLDNAGKKMQDHLDAVMHIEGHISKREDNNANQTLSRYRVEEIKNYMTMTYNIDPDR
IKTIYYGSERPIATNDAENSWLNQRIYALISNVE

Sequences:

>Translated_194_residues
MKMLLRNTLVVLVSALTLSACQTADFSKQTSQTINMPTVAVNLDSDGDGVPNKLDQCPNTPENVVVDDRGCPHSLLFGEN
EFMMEARAYYDENSSEIKSEYYEQLDNAGKKMQDHLDAVMHIEGHISKREDNNANQTLSRYRVEEIKNYMTMTYNIDPDR
IKTIYYGSERPIATNDAENSWLNQRIYALISNVE
>Mature_194_residues
MKMLLRNTLVVLVSALTLSACQTADFSKQTSQTINMPTVAVNLDSDGDGVPNKLDQCPNTPENVVVDDRGCPHSLLFGEN
EFMMEARAYYDENSSEIKSEYYEQLDNAGKKMQDHLDAVMHIEGHISKREDNNANQTLSRYRVEEIKNYMTMTYNIDPDR
IKTIYYGSERPIATNDAENSWLNQRIYALISNVE

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 22114; Mature: 22114

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMLLRNTLVVLVSALTLSACQTADFSKQTSQTINMPTVAVNLDSDGDGVPNKLDQCPNT
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCEECCCEEEEEECCCCCCCCHHHHHCCCC
PENVVVDDRGCPHSLLFGENEFMMEARAYYDENSSEIKSEYYEQLDNAGKKMQDHLDAVM
CCCEEEECCCCCCCEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HIEGHISKREDNNANQTLSRYRVEEIKNYMTMTYNIDPDRIKTIYYGSERPIATNDAENS
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCHHHEEEEEECCCCCCCCCCCCHH
WLNQRIYALISNVE
HHHHHHHHHHHCCC
>Mature Secondary Structure
MKMLLRNTLVVLVSALTLSACQTADFSKQTSQTINMPTVAVNLDSDGDGVPNKLDQCPNT
CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCEECCCEEEEEECCCCCCCCHHHHHCCCC
PENVVVDDRGCPHSLLFGENEFMMEARAYYDENSSEIKSEYYEQLDNAGKKMQDHLDAVM
CCCEEEECCCCCCCEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HIEGHISKREDNNANQTLSRYRVEEIKNYMTMTYNIDPDRIKTIYYGSERPIATNDAENS
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCHHHEEEEEECCCCCCCCCCCCHH
WLNQRIYALISNVE
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]