Click here to switch to the map view.

The map label for this gene is oprF [H]

Identifier: 93005424

GI number: 93005424

Start: 709392

End: 710090

Strand: Direct

Name: oprF [H]

Synonym: Pcryo_0594

Alternate gene names: 93005424

Gene position: 709392-710090 (Clockwise)

Preceding gene: 93005423

Following gene: 93005425

Centisome position: 23.18

GC content: 40.77

Gene sequence:

>699_bases
ATGAAAAGTAAGTCATGGATGACGATAGGCGTTGTAATAGCTAGCTTTATGTTAGCCTCCTGCCAATCCACACCAGAAAC
TGCCGTAATTAATGGAAAACCATATATTCCTCCTAAAGTCTTGATAGAGCCACTTGCAGATACAGACAATGATGGCGTCC
CTGACATCATAGATAATTGCCCGAATACCCCTGAGGGTGTGATGACGGATGAGTATGGTTGTCCAGTAGCAGTGAGTTTA
ATAGGTTATCTTACGATGGAGCTACGAGTTTTCTTTGAGCGCAATAGTAATGAGTTGCAAACGAAGTACTTGCCAGAAGT
GGAAAAAGTAGCTGAAAAAATGCATAGCAATCCTGAGCTAGTAGTGGTTTTGTCTGGTCATACCTCTGAGCTTGAAGCTG
CGCATGCATCAGGAGATATATACGGAGAAATGAATCAAGAAAAAGTTGATAAACGTCAATTAGGACGTGATCGGGCACAG
ATAATAAAAACTGCTTTGGTTAAGAGGAACATAGCTACTGATAAAATCTATACGTTTGATTGTGCTGATAGTATGCCGAT
TGCACCTAACGATACTGAAGAAGGTAGATCAATGAACCAGCGTATTTATGGCAAGGCGTTAAATGCCAATGATTTTTATG
CAGGCAGTGTTCGCGAGCAGTCACTCACGTACTATAAAGAATTCTGTCAGCAATTTTAA

Upstream 100 bases:

>100_bases
TATCGGGTTAGTAAAATCAAGCCATTGATGCGGCTATTTGCTAAGCAGGCGAGTGGGGTTTAGTGTTTAACGAACTTTCT
AGATGAACTAAGGAAGGTAT

Downstream 100 bases:

>100_bases
AGGTATCATTTATGAAAATGCTATTAAGAAATACGCTTGTCGTTTTAGTCAGCGCTTTAACATTATCCGCCTGTCAAACC
GCCGATTTTTCTAAGCAAAC

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKSKSWMTIGVVIASFMLASCQSTPETAVINGKPYIPPKVLIEPLADTDNDGVPDIIDNCPNTPEGVMTDEYGCPVAVSL
IGYLTMELRVFFERNSNELQTKYLPEVEKVAEKMHSNPELVVVLSGHTSELEAAHASGDIYGEMNQEKVDKRQLGRDRAQ
IIKTALVKRNIATDKIYTFDCADSMPIAPNDTEEGRSMNQRIYGKALNANDFYAGSVREQSLTYYKEFCQQF

Sequences:

>Translated_232_residues
MKSKSWMTIGVVIASFMLASCQSTPETAVINGKPYIPPKVLIEPLADTDNDGVPDIIDNCPNTPEGVMTDEYGCPVAVSL
IGYLTMELRVFFERNSNELQTKYLPEVEKVAEKMHSNPELVVVLSGHTSELEAAHASGDIYGEMNQEKVDKRQLGRDRAQ
IIKTALVKRNIATDKIYTFDCADSMPIAPNDTEEGRSMNQRIYGKALNANDFYAGSVREQSLTYYKEFCQQF
>Mature_232_residues
MKSKSWMTIGVVIASFMLASCQSTPETAVINGKPYIPPKVLIEPLADTDNDGVPDIIDNCPNTPEGVMTDEYGCPVAVSL
IGYLTMELRVFFERNSNELQTKYLPEVEKVAEKMHSNPELVVVLSGHTSELEAAHASGDIYGEMNQEKVDKRQLGRDRAQ
IIKTALVKRNIATDKIYTFDCADSMPIAPNDTEEGRSMNQRIYGKALNANDFYAGSVREQSLTYYKEFCQQF

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 25890; Mature: 25890

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKSWMTIGVVIASFMLASCQSTPETAVINGKPYIPPKVLIEPLADTDNDGVPDIIDNC
CCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCCCCCCCCCCHHHHCC
PNTPEGVMTDEYGCPVAVSLIGYLTMELRVFFERNSNELQTKYLPEVEKVAEKMHSNPEL
CCCCCCCEECCCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHCCHHHHHHHHHCCCCCE
VVVLSGHTSELEAAHASGDIYGEMNQEKVDKRQLGRDRAQIIKTALVKRNIATDKIYTFD
EEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEEEE
CADSMPIAPNDTEEGRSMNQRIYGKALNANDFYAGSVREQSLTYYKEFCQQF
CCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSKSWMTIGVVIASFMLASCQSTPETAVINGKPYIPPKVLIEPLADTDNDGVPDIIDNC
CCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHCCCCCCCCCCCCHHHHCC
PNTPEGVMTDEYGCPVAVSLIGYLTMELRVFFERNSNELQTKYLPEVEKVAEKMHSNPEL
CCCCCCCEECCCCCCHHHHHHHHHHHHHHHEEECCCCCHHHHHCCHHHHHHHHHCCCCCE
VVVLSGHTSELEAAHASGDIYGEMNQEKVDKRQLGRDRAQIIKTALVKRNIATDKIYTFD
EEEECCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHCCCCCEEEEEE
CADSMPIAPNDTEEGRSMNQRIYGKALNANDFYAGSVREQSLTYYKEFCQQF
CCCCCCCCCCCCHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1898935 [H]