| Definition | Psychrobacter cryohalolentis K5 chromosome, complete genome. |
|---|---|
| Accession | NC_007969 |
| Length | 3,059,876 |
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The map label for this gene is rpoN [H]
Identifier: 93005054
GI number: 93005054
Start: 267264
End: 268991
Strand: Direct
Name: rpoN [H]
Synonym: Pcryo_0223
Alternate gene names: 93005054
Gene position: 267264-268991 (Clockwise)
Preceding gene: 93005052
Following gene: 93005055
Centisome position: 8.73
GC content: 44.33
Gene sequence:
>1728_bases ATGAGTATGTCGTTCGGATTGGCGACCACGCTAAGCACCTCACAAAAACTGACCCCGCAAATGCAGCAAGCTATTAAATT GCTGCAGCTCTCTAGTCTTGAGCTGGCGCAAGAGGTTCAAGCGAAGCTGGACAGTAATCCATTACTAGAACGCATCGAAA ACGATGAAGATGAGTACGAAAGTATGGATAAAGACGCATTAGATGAGTTTGGCGAGCCACTAACGTTAGACAGTTGGAAT CAGAGTACTGCTTCTGATACGTTTTCTATATCTCCTCCATCAAATAATGAAGATGTATTTGACTATGATGACAGTACTAG CGATAGCCTTACTAATGATAGTCTAGATAAATTGCAGCAAGACGGTTTTGATACGGATGCCATCGACAGTTATACGCTTG AAGACTTTGAAGGCTCAAACTATGAAAGCTCAAACTATGAAAGCTCAAACTATGATAGCCCTAATGCAGATTATGACGGT TTTAACACCGCCAGTACTGGTTCAGGCAGCATATCAGCGCGTCCAGATTCTGAGGACTTTGATCGCTATGAGGGCAGTAC CAATGCGACGATTCAAGACCATGTGCGTTGGCAGCTGAATTTTAAACGTCTCTCAGAGACAGATACTCTTATCGCTGAGT ATTTGATGGATTCTATGGACGACATGGGTTTTGTACGGCTCGATATCGAGGAGTTGCTACAGAGCTTTGATACCATTGCG AGCTTTTATCAGTGGGATCAGCGCGTTGAGCAGGATGAAGTAATGGCAGTACTGCGCATGATTCAATCCTGTGATCCGCT TGGGGTTGGCGCACGAAATCTAAGTGAATGCTTAGCGATTCAGCTATCTAAGCTCGACACTGACACGCCTTATCTAAAAC AAGCCCAAGCGCTCTTATCTGCCAGTGAGCATCTGGTCAGTAATAATATTAAAGCCTTAACTGAGCGCACAGGACTTGCG GCTCATGAGATTACCCCTGCGCTTACGCTGTTGCGTACTTTAAATCCTTCACCAGGATTGCTATTTCAAAGCCGCCAACC GGATTATACTCAGTCGCCCGACAGCTATGATATCCCTGATGTATTGGTGACGCCTATCCGTCGCCATGATGCTCATCAAA ACACCACCATATCTACTCAAGAAGATGGCTGGCAGGTACGTCTAAACCCTGAAACCTTGCCAAAACTACGAGTCAACCAA GAATATGCCAACCTTGTTAAGCGCGGCGATAATAGCCCTGATAATCAATATCTGCGTGAAAATCTCACTGATGCGCGCTT ATTTATTCGCAGTATCGAAGAGCGTAATCAGAACCTTTTAAAGGTAGCCACTAGTATCGTGCGCTACCAGCAATCTTTTT TGCAGTATGGCGCCACTGCTATGCAACCGCTTATTTTAAAGGTGATTGCAGACGAAGTTGATTTACATGAATCAACGGTC TCGCGCCTGACCACTAGCAAGACCATTTTGACACCGCAAGGACTGTTTTCGCTCAAGCATTTCTTTTCATCACATGTTAG CAGCAGCGATGGCGATATCTCATCAACTGCTATCAGTGCGATGATTAAGCAGCTTATCGCTGATGAAGAGCCCAAAAAGC CATTGTCTGATAGTAAGATAAAAGATTATTTGTTGGCAGAAGGTATCGATATTGCCAGAAGAACAGTCGCCAAATATCGT GAAGCAATGAATATTGGCTCATCTACACAGCGCAAACAAAAATATTAA
Upstream 100 bases:
>100_bases TCGCAAAAAATGCTATCGTCATGTCCTGTTAAGGGTAAACCGCTCATTAATCAGCATTACAAAGACAATATTACCAAGAC TGGAGTGTAATAAACTGCCC
Downstream 100 bases:
>100_bases TGGTCTGAATTCAATAAGTTATCTAAAGAGGTGATTAATAATCAAAATATTCTATAGGAAATATAAAAAATAAAATTTTC TGATTATATAGAAACATTAA
Product: sigma-54 (RpoN)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 575; Mature: 574
Protein sequence:
>575_residues MSMSFGLATTLSTSQKLTPQMQQAIKLLQLSSLELAQEVQAKLDSNPLLERIENDEDEYESMDKDALDEFGEPLTLDSWN QSTASDTFSISPPSNNEDVFDYDDSTSDSLTNDSLDKLQQDGFDTDAIDSYTLEDFEGSNYESSNYESSNYDSPNADYDG FNTASTGSGSISARPDSEDFDRYEGSTNATIQDHVRWQLNFKRLSETDTLIAEYLMDSMDDMGFVRLDIEELLQSFDTIA SFYQWDQRVEQDEVMAVLRMIQSCDPLGVGARNLSECLAIQLSKLDTDTPYLKQAQALLSASEHLVSNNIKALTERTGLA AHEITPALTLLRTLNPSPGLLFQSRQPDYTQSPDSYDIPDVLVTPIRRHDAHQNTTISTQEDGWQVRLNPETLPKLRVNQ EYANLVKRGDNSPDNQYLRENLTDARLFIRSIEERNQNLLKVATSIVRYQQSFLQYGATAMQPLILKVIADEVDLHESTV SRLTTSKTILTPQGLFSLKHFFSSHVSSSDGDISSTAISAMIKQLIADEEPKKPLSDSKIKDYLLAEGIDIARRTVAKYR EAMNIGSSTQRKQKY
Sequences:
>Translated_575_residues MSMSFGLATTLSTSQKLTPQMQQAIKLLQLSSLELAQEVQAKLDSNPLLERIENDEDEYESMDKDALDEFGEPLTLDSWN QSTASDTFSISPPSNNEDVFDYDDSTSDSLTNDSLDKLQQDGFDTDAIDSYTLEDFEGSNYESSNYESSNYDSPNADYDG FNTASTGSGSISARPDSEDFDRYEGSTNATIQDHVRWQLNFKRLSETDTLIAEYLMDSMDDMGFVRLDIEELLQSFDTIA SFYQWDQRVEQDEVMAVLRMIQSCDPLGVGARNLSECLAIQLSKLDTDTPYLKQAQALLSASEHLVSNNIKALTERTGLA AHEITPALTLLRTLNPSPGLLFQSRQPDYTQSPDSYDIPDVLVTPIRRHDAHQNTTISTQEDGWQVRLNPETLPKLRVNQ EYANLVKRGDNSPDNQYLRENLTDARLFIRSIEERNQNLLKVATSIVRYQQSFLQYGATAMQPLILKVIADEVDLHESTV SRLTTSKTILTPQGLFSLKHFFSSHVSSSDGDISSTAISAMIKQLIADEEPKKPLSDSKIKDYLLAEGIDIARRTVAKYR EAMNIGSSTQRKQKY >Mature_574_residues SMSFGLATTLSTSQKLTPQMQQAIKLLQLSSLELAQEVQAKLDSNPLLERIENDEDEYESMDKDALDEFGEPLTLDSWNQ STASDTFSISPPSNNEDVFDYDDSTSDSLTNDSLDKLQQDGFDTDAIDSYTLEDFEGSNYESSNYESSNYDSPNADYDGF NTASTGSGSISARPDSEDFDRYEGSTNATIQDHVRWQLNFKRLSETDTLIAEYLMDSMDDMGFVRLDIEELLQSFDTIAS FYQWDQRVEQDEVMAVLRMIQSCDPLGVGARNLSECLAIQLSKLDTDTPYLKQAQALLSASEHLVSNNIKALTERTGLAA HEITPALTLLRTLNPSPGLLFQSRQPDYTQSPDSYDIPDVLVTPIRRHDAHQNTTISTQEDGWQVRLNPETLPKLRVNQE YANLVKRGDNSPDNQYLRENLTDARLFIRSIEERNQNLLKVATSIVRYQQSFLQYGATAMQPLILKVIADEVDLHESTVS RLTTSKTILTPQGLFSLKHFFSSHVSSSDGDISSTAISAMIKQLIADEEPKKPLSDSKIKDYLLAEGIDIARRTVAKYRE AMNIGSSTQRKQKY
Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]
COG id: COG1508
COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sigma-54 factor family [H]
Homologues:
Organism=Escherichia coli, GI1789594, Length=421, Percent_Identity=41.5676959619952, Blast_Score=327, Evalue=1e-90,
Paralogues:
None
Copy number: 70 (log & stationary phase) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000394 - InterPro: IPR007046 - InterPro: IPR007634 [H]
Pfam domain/function: PF00309 Sigma54_AID; PF04963 Sigma54_CBD; PF04552 Sigma54_DBD [H]
EC number: NA
Molecular weight: Translated: 64607; Mature: 64476
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: PS00717 SIGMA54_1 ; PS00718 SIGMA54_2 ; PS50044 SIGMA54_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSMSFGLATTLSTSQKLTPQMQQAIKLLQLSSLELAQEVQAKLDSNPLLERIENDEDEYE CCCCCCCHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHH SMDKDALDEFGEPLTLDSWNQSTASDTFSISPPSNNEDVFDYDDSTSDSLTNDSLDKLQQ HCCHHHHHHCCCCCEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH DGFDTDAIDSYTLEDFEGSNYESSNYESSNYDSPNADYDGFNTASTGSGSISARPDSEDF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH DRYEGSTNATIQDHVRWQLNFKRLSETDTLIAEYLMDSMDDMGFVRLDIEELLQSFDTIA HHHCCCCCCCHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHH SFYQWDQRVEQDEVMAVLRMIQSCDPLGVGARNLSECLAIQLSKLDTDTPYLKQAQALLS HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH ASEHLVSNNIKALTERTGLAAHEITPALTLLRTLNPSPGLLFQSRQPDYTQSPDSYDIPD HHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCH VLVTPIRRHDAHQNTTISTQEDGWQVRLNPETLPKLRVNQEYANLVKRGDNSPDNQYLRE HHHCCHHHHCCCCCCEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH NLTDARLFIRSIEERNQNLLKVATSIVRYQQSFLQYGATAMQPLILKVIADEVDLHESTV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH SRLTTSKTILTPQGLFSLKHFFSSHVSSSDGDISSTAISAMIKQLIADEEPKKPLSDSKI HHHHHCCEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHH KDYLLAEGIDIARRTVAKYREAMNIGSSTQRKQKY HHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHCCC >Mature Secondary Structure SMSFGLATTLSTSQKLTPQMQQAIKLLQLSSLELAQEVQAKLDSNPLLERIENDEDEYE CCCCCCHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHH SMDKDALDEFGEPLTLDSWNQSTASDTFSISPPSNNEDVFDYDDSTSDSLTNDSLDKLQQ HCCHHHHHHCCCCCEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHH DGFDTDAIDSYTLEDFEGSNYESSNYESSNYDSPNADYDGFNTASTGSGSISARPDSEDF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH DRYEGSTNATIQDHVRWQLNFKRLSETDTLIAEYLMDSMDDMGFVRLDIEELLQSFDTIA HHHCCCCCCCHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHH SFYQWDQRVEQDEVMAVLRMIQSCDPLGVGARNLSECLAIQLSKLDTDTPYLKQAQALLS HHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH ASEHLVSNNIKALTERTGLAAHEITPALTLLRTLNPSPGLLFQSRQPDYTQSPDSYDIPD HHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCH VLVTPIRRHDAHQNTTISTQEDGWQVRLNPETLPKLRVNQEYANLVKRGDNSPDNQYLRE HHHCCHHHHCCCCCCEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHH NLTDARLFIRSIEERNQNLLKVATSIVRYQQSFLQYGATAMQPLILKVIADEVDLHESTV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH SRLTTSKTILTPQGLFSLKHFFSSHVSSSDGDISSTAISAMIKQLIADEEPKKPLSDSKI HHHHHCCEEECCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHH KDYLLAEGIDIARRTVAKYREAMNIGSSTQRKQKY HHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8206826 [H]