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The map label for this gene is xerC [H]

Identifier: 93005052

GI number: 93005052

Start: 264911

End: 265960

Strand: Direct

Name: xerC [H]

Synonym: Pcryo_0221

Alternate gene names: 93005052

Gene position: 264911-265960 (Clockwise)

Preceding gene: 93005051

Following gene: 93005054

Centisome position: 8.66

GC content: 46.19

Gene sequence:

>1050_bases
ATGGTGATGTCTTATAAAAAATCTCAAGTGATAGACGCACGATCTGATAAACAATCCGTTTCACCGTCATGGCTATCAGC
AGAATTGGCAATCACCATAGAAGCGGATGCCGCGTTAAGTGAATTATTAGCCCCTGTGCATCGTTGGCTAAATGTCTTAT
CTGTGCGCAATCACTCACCGCATACATTGACGGCTTATTTTGCTGGCTTAAACCAGTTGGCGTTATTCCTGCGAGGTAAA
CGCCTGACATGGACACGTTGTGATAAGCGCCAATTAGCCCAGCATATCAGCCAACGCCTTGATGAAGACAAACTATCCCT
CGCCAGCGTTCAGCAAGAGTTATCAGCTATTCGTCATTTTTATGGCTGGCTGATAGAAGAGGATTTGGCACGTATTAATC
CAACCACAGGCTATCAGCTTAAGCGTAGTCCTAGACCATTACCCTCTATCGCTGATGTGGATTTATTGACGCAATTGCTC
GACCAAGAAATACCTGATACACCTGAACAAGCGCGATTATGGCTACGTGATAAGGCGATGTTTGAATTGCTTTATAGCAG
TGGTCTACGTGTCGGTGAGCTCGTCGCGTTAGATATAGTAGATGTCGACTTAGCTGATCTGCGCGTACGCGTGACCGGCA
AAGGTAATAAGACACGCCTAGTACCTTTAGGAATAAAAGCGGCTGACGCCATTCGTCGTTATTTACCGCACCGTAATCTG
TGGGTAGAGCAGATGGACCAAGCATTATTTATTAGTGAAAAACTGGGTACGCGTTTATCAACACGGGCTGTGCAGCAGCG
TCTTAAAGTTGCTGCTACTCGTGCTGGTATTGCTCAAAACATGTATCCGCATCTATTGCGCCATTGCTTTGCATCACATA
TGTTGTCAGGAAGTGGCGACTTGCGCGCTGTCCAAGAGATGCTTGGGCATAGCGATATCAGTACCACGCAAATTTATACC
CATGTCGATTTTGCTAAATTGACCCAAGTCTATGACCGTGCCCATCCTCGAGCCACTCACGTATCCAAAGACAGCGATTC
AACCCTTTAA

Upstream 100 bases:

>100_bases
CTTGATGGCACAAGCCGGTATCAAGCCCAATCCAGAAAGTTAATAGTAAAACATAAGTGACAGTTATTTTTACTGGATAA
GTAATGGGGTTGTTTTCAAT

Downstream 100 bases:

>100_bases
TTTTAAAAGTGTCTTTCATAGCAAATTGCTTTGATTAAAAAAACCTTTTATCAAGACGCTTTTATAAAAATTATTTTATG
CCAAACGATGACAATCAAAG

Product: phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MVMSYKKSQVIDARSDKQSVSPSWLSAELAITIEADAALSELLAPVHRWLNVLSVRNHSPHTLTAYFAGLNQLALFLRGK
RLTWTRCDKRQLAQHISQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIADVDLLTQLL
DQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIVDVDLADLRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNL
WVEQMDQALFISEKLGTRLSTRAVQQRLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYT
HVDFAKLTQVYDRAHPRATHVSKDSDSTL

Sequences:

>Translated_349_residues
MVMSYKKSQVIDARSDKQSVSPSWLSAELAITIEADAALSELLAPVHRWLNVLSVRNHSPHTLTAYFAGLNQLALFLRGK
RLTWTRCDKRQLAQHISQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIADVDLLTQLL
DQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIVDVDLADLRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNL
WVEQMDQALFISEKLGTRLSTRAVQQRLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYT
HVDFAKLTQVYDRAHPRATHVSKDSDSTL
>Mature_349_residues
MVMSYKKSQVIDARSDKQSVSPSWLSAELAITIEADAALSELLAPVHRWLNVLSVRNHSPHTLTAYFAGLNQLALFLRGK
RLTWTRCDKRQLAQHISQRLDEDKLSLASVQQELSAIRHFYGWLIEEDLARINPTTGYQLKRSPRPLPSIADVDLLTQLL
DQEIPDTPEQARLWLRDKAMFELLYSSGLRVGELVALDIVDVDLADLRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNL
WVEQMDQALFISEKLGTRLSTRAVQQRLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYT
HVDFAKLTQVYDRAHPRATHVSKDSDSTL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerD binding sites by a short central region, forming

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=302, Percent_Identity=43.7086092715232, Blast_Score=225, Evalue=3e-60,
Organism=Escherichia coli, GI1789261, Length=301, Percent_Identity=38.2059800664452, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1790768, Length=161, Percent_Identity=31.055900621118, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1790767, Length=168, Percent_Identity=27.9761904761905, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39442; Mature: 39442

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMSYKKSQVIDARSDKQSVSPSWLSAELAITIEADAALSELLAPVHRWLNVLSVRNHSP
CCCCCCHHHHHCCCCCCCCCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCC
HTLTAYFAGLNQLALFLRGKRLTWTRCDKRQLAQHISQRLDEDKLSLASVQQELSAIRHF
CCHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YGWLIEEDLARINPTTGYQLKRSPRPLPSIADVDLLTQLLDQEIPDTPEQARLWLRDKAM
HHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
FELLYSSGLRVGELVALDIVDVDLADLRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNL
HHHHHHCCCCCHHEEEEEEEECCHHHEEEEEECCCCCEEEEEECCHHHHHHHHHCCCCCC
WVEQMDQALFISEKLGTRLSTRAVQQRLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGD
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHPRATHVSKDSDSTL
HHHHHHHHCCCCCCHHEEEEHHHHHHHHHHHHHCCCCHHCCCCCCCCCC
>Mature Secondary Structure
MVMSYKKSQVIDARSDKQSVSPSWLSAELAITIEADAALSELLAPVHRWLNVLSVRNHSP
CCCCCCHHHHHCCCCCCCCCCCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCC
HTLTAYFAGLNQLALFLRGKRLTWTRCDKRQLAQHISQRLDEDKLSLASVQQELSAIRHF
CCHHHHHHHHHHHHHHHCCCCCCHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
YGWLIEEDLARINPTTGYQLKRSPRPLPSIADVDLLTQLLDQEIPDTPEQARLWLRDKAM
HHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
FELLYSSGLRVGELVALDIVDVDLADLRVRVTGKGNKTRLVPLGIKAADAIRRYLPHRNL
HHHHHHCCCCCHHEEEEEEEECCHHHEEEEEECCCCCEEEEEECCHHHHHHHHHCCCCCC
WVEQMDQALFISEKLGTRLSTRAVQQRLKVAATRAGIAQNMYPHLLRHCFASHMLSGSGD
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
LRAVQEMLGHSDISTTQIYTHVDFAKLTQVYDRAHPRATHVSKDSDSTL
HHHHHHHHCCCCCCHHEEEEHHHHHHHHHHHHHCCCCHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA