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The map label for this gene is ybgF [C]

Identifier: 92113978

GI number: 92113978

Start: 2109574

End: 2110338

Strand: Direct

Name: ybgF [C]

Synonym: Csal_1855

Alternate gene names: 92113978

Gene position: 2109574-2110338 (Clockwise)

Preceding gene: 92113977

Following gene: 92113979

Centisome position: 57.07

GC content: 60.39

Gene sequence:

>765_bases
ATGAAACACGGTCTGAAAAGACTGTGCGGCGCGGGAGCCTTGTTGCTCCCGCTGTCCGTGTGGGCCCAGCCCGCGGTCGA
TGACTTGACCGACCAGTCGAGCAATAATTTCTACAACCAGACGGCCGCACGCGAGTCGGGCGGCAATCTGGCCCTGTTCA
ACCAGTTGAAGGACAATCAGCGCGAGATCCAGCAACTGCGAGGGCAGATCGAGGAGCTCCGTTACCAGCTCGAACAGCAG
AAGCAGCTGTCGCAGGAACGTTACCTGGATCTCGAGAAACGCCTCGACACGCTGGCCTCGCAACGCCGTGAAGCCATCGA
CACTGATGCCGCGGCATCGGTCACGGAAGAGGCATCCGCCACGGGCGACCAGGACGCTCAGACCGGCGATCAGGGACGCG
ATGCCTATCAGGCCGCCTTCCAGAAGGTCCAGGCACGCGAGTTCGATGCAGCGATCAAGGCCTTCGAGGACTTCATCGGC
GACTACCCGAATTCCAGTTTACGTGCCAATGCGCATTATTGGCTGGGTGAGCTGTACTCCGCCCAATCGCAGCTGGATGC
CGCCGCCAAGTCGTTCCAGACGGTCATCGACGATTTCCCCGAAAGCAACAAGATGCCCGATGCGTTGTACAAGCTGGGGC
TGCTCAAGGCACGCCAGGGACATCCCGATGAAAGCCGTTCGCTGCTCGATCGGGTACGCAACGACTATCCTGAAAGCAAC
GCGGCCAGCATGGCCGAGGACTTCCTCAACCAGTCCGGCAACTGA

Upstream 100 bases:

>100_bases
TATGGCGAAGAGCGTCCTGCGGTACGCGGACACGATGAAGAGTCCTATGCTCAGAATCGTCGCGTCGTCTTCGCTTATTA
ACACGCCGCCGGAGTGACGT

Downstream 100 bases:

>100_bases
ACGCTGCCGGCCATACCGAGCTGATCCCCCGACGGATACGAGGCGGAGGTGAACTATGGAGTGCCATATCGACTATCAGC
CGGCGGCCGACCTGCTCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKHGLKRLCGAGALLLPLSVWAQPAVDDLTDQSSNNFYNQTAARESGGNLALFNQLKDNQREIQQLRGQIEELRYQLEQQ
KQLSQERYLDLEKRLDTLASQRREAIDTDAAASVTEEASATGDQDAQTGDQGRDAYQAAFQKVQAREFDAAIKAFEDFIG
DYPNSSLRANAHYWLGELYSAQSQLDAAAKSFQTVIDDFPESNKMPDALYKLGLLKARQGHPDESRSLLDRVRNDYPESN
AASMAEDFLNQSGN

Sequences:

>Translated_254_residues
MKHGLKRLCGAGALLLPLSVWAQPAVDDLTDQSSNNFYNQTAARESGGNLALFNQLKDNQREIQQLRGQIEELRYQLEQQ
KQLSQERYLDLEKRLDTLASQRREAIDTDAAASVTEEASATGDQDAQTGDQGRDAYQAAFQKVQAREFDAAIKAFEDFIG
DYPNSSLRANAHYWLGELYSAQSQLDAAAKSFQTVIDDFPESNKMPDALYKLGLLKARQGHPDESRSLLDRVRNDYPESN
AASMAEDFLNQSGN
>Mature_254_residues
MKHGLKRLCGAGALLLPLSVWAQPAVDDLTDQSSNNFYNQTAARESGGNLALFNQLKDNQREIQQLRGQIEELRYQLEQQ
KQLSQERYLDLEKRLDTLASQRREAIDTDAAASVTEEASATGDQDAQTGDQGRDAYQAAFQKVQAREFDAAIKAFEDFIG
DYPNSSLRANAHYWLGELYSAQSQLDAAAKSFQTVIDDFPESNKMPDALYKLGLLKARQGHPDESRSLLDRVRNDYPESN
AASMAEDFLNQSGN

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=203, Percent_Identity=34.9753694581281, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28372; Mature: 28372

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHCCCC
>Mature Secondary Structure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HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]