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The map label for this gene is pal [H]

Identifier: 92113977

GI number: 92113977

Start: 2109021

End: 2109554

Strand: Direct

Name: pal [H]

Synonym: Csal_1854

Alternate gene names: 92113977

Gene position: 2109021-2109554 (Clockwise)

Preceding gene: 92113976

Following gene: 92113978

Centisome position: 57.05

GC content: 61.8

Gene sequence:

>534_bases
ATGCAATTCAAACCCTATGCCAAAGGATTCGCCGTCGCCCTGTCGTTGGCGGTTCTCGCCGGGTGCTCCAGCACAGGCGG
CACTCAGGACGGCAGCATGGATGGCACCTCAGGGACTGGTGCCGGTGGTACAGGCACGGCGTCCAGCCAAGGAATGGGCG
ACGGGCAGGGCACCTCGGGCACGTCGATGAGCGATCGTGACGCCATCCCCGAACAGCGCACCATTTATTTCGCCTTCGAC
CGTGACACCATTCGTCCCGAGTTCGAATCGGTGCTGAGCGCGCATGCCGAGTACCTGCAGAGCCATCCCAACACGAATGT
CGTGCTGGAAGGCCATGCCGACGAACGCGGTACGCGTGAATACAACCTGGGCCTGGGCGAGCGTCGCGCGCGCGCCGTCG
AGCAGTATCTCACCGTGGAAGGCGTCTCTGCGTCCCAGATCGAGATCGTCAGCTATGGCGAAGAGCGTCCTGCGGTACGC
GGACACGATGAAGAGTCCTATGCTCAGAATCGTCGCGTCGTCTTCGCTTATTAA

Upstream 100 bases:

>100_bases
TCTGCCATCGCCGCAGGGCGACGTGCGGGAACCCGCATGGTCTCCCTTTTTGGACTAACCCGCGTAATGTGTCATTCGAT
TTCCAAGTAAGGAGAAAACA

Downstream 100 bases:

>100_bases
CACGCCGCCGGAGTGACGTATGAAACACGGTCTGAAAAGACTGTGCGGCGCGGGAGCCTTGTTGCTCCCGCTGTCCGTGT
GGGCCCAGCCCGCGGTCGAT

Product: OmpA/MotB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MQFKPYAKGFAVALSLAVLAGCSSTGGTQDGSMDGTSGTGAGGTGTASSQGMGDGQGTSGTSMSDRDAIPEQRTIYFAFD
RDTIRPEFESVLSAHAEYLQSHPNTNVVLEGHADERGTREYNLGLGERRARAVEQYLTVEGVSASQIEIVSYGEERPAVR
GHDEESYAQNRRVVFAY

Sequences:

>Translated_177_residues
MQFKPYAKGFAVALSLAVLAGCSSTGGTQDGSMDGTSGTGAGGTGTASSQGMGDGQGTSGTSMSDRDAIPEQRTIYFAFD
RDTIRPEFESVLSAHAEYLQSHPNTNVVLEGHADERGTREYNLGLGERRARAVEQYLTVEGVSASQIEIVSYGEERPAVR
GHDEESYAQNRRVVFAY
>Mature_177_residues
MQFKPYAKGFAVALSLAVLAGCSSTGGTQDGSMDGTSGTGAGGTGTASSQGMGDGQGTSGTSMSDRDAIPEQRTIYFAFD
RDTIRPEFESVLSAHAEYLQSHPNTNVVLEGHADERGTREYNLGLGERRARAVEQYLTVEGVSASQIEIVSYGEERPAVR
GHDEESYAQNRRVVFAY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=177, Percent_Identity=45.1977401129944, Blast_Score=157, Evalue=5e-40,
Organism=Escherichia coli, GI48994946, Length=119, Percent_Identity=31.0924369747899, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 18898; Mature: 18898

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFKPYAKGFAVALSLAVLAGCSSTGGTQDGSMDGTSGTGAGGTGTASSQGMGDGQGTSG
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TSMSDRDAIPEQRTIYFAFDRDTIRPEFESVLSAHAEYLQSHPNTNVVLEGHADERGTRE
CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEE
YNLGLGERRARAVEQYLTVEGVSASQIEIVSYGEERPAVRGHDEESYAQNRRVVFAY
ECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHCCEEEEEC
>Mature Secondary Structure
MQFKPYAKGFAVALSLAVLAGCSSTGGTQDGSMDGTSGTGAGGTGTASSQGMGDGQGTSG
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TSMSDRDAIPEQRTIYFAFDRDTIRPEFESVLSAHAEYLQSHPNTNVVLEGHADERGTRE
CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEE
YNLGLGERRARAVEQYLTVEGVSASQIEIVSYGEERPAVRGHDEESYAQNRRVVFAY
ECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]