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The map label for this gene is ygiT [H]

Identifier: 92109758

GI number: 92109758

Start: 108321

End: 108749

Strand: Reverse

Name: ygiT [H]

Synonym: Nham_4657

Alternate gene names: 92109758

Gene position: 108749-108321 (Counterclockwise)

Preceding gene: 92109759

Following gene: 92109749

Centisome position: 89.57

GC content: 60.84

Gene sequence:

>429_bases
ATGGCGGCATCGAAGATGGACGTGCCCAACACAATGGTCTCTCCGGAGACAGGAGAGACGCTGCGCCGCGGCGTTCGTCC
CTTAATCGTGACCTACAAGGGTAAGAGCATCACGGTCGAACTGCCCGGTTATTATCCGGACAATGGCGACGACGGCATCC
ATGTCGGTGACGACATGGCGATCACCGATGCGGCGCTTCGGATTTTGAAGGAAGAGATCGAAGGCATTCCCTCTCCCGCC
ACGATCAGAAGAGTGCGCGAGAAGCTCAAGCTGTCGCAGCGCGAGGCGGGCGGTCTGCTCAAGGTGGGCGAGAACGCCTT
CGATAAATACGAGCGGGGCCTGGTCGAGCCAAGCGGTCCGACCAGCCAGTTGTTGCGGCTCCTCGACCAGCATCCGGAGC
TGCTCGAGGACTTGCGCGAGAGCGCCTAA

Upstream 100 bases:

>100_bases
ACGTCTACCACGTCCCGGCGCGCGGCGTGACGATCTACGTGAAGATCCAGGCGGACGTCGTGACCGAGTTCACGGTCATG
TCGTTCAAGGAGCAATGACC

Downstream 100 bases:

>100_bases
GCAGCGATCGACCTCGCCTCGCCGGCGCCCTCGATGTCCGAGGCAAGCGCTTTGTCGATCTCGGCGAGTTGCCTCCGCTT
GCCGGCGAGTTCGCCGGCGA

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MAASKMDVPNTMVSPETGETLRRGVRPLIVTYKGKSITVELPGYYPDNGDDGIHVGDDMAITDAALRILKEEIEGIPSPA
TIRRVREKLKLSQREAGGLLKVGENAFDKYERGLVEPSGPTSQLLRLLDQHPELLEDLRESA

Sequences:

>Translated_142_residues
MAASKMDVPNTMVSPETGETLRRGVRPLIVTYKGKSITVELPGYYPDNGDDGIHVGDDMAITDAALRILKEEIEGIPSPA
TIRRVREKLKLSQREAGGLLKVGENAFDKYERGLVEPSGPTSQLLRLLDQHPELLEDLRESA
>Mature_141_residues
AASKMDVPNTMVSPETGETLRRGVRPLIVTYKGKSITVELPGYYPDNGDDGIHVGDDMAITDAALRILKEEIEGIPSPAT
IRRVREKLKLSQREAGGLLKVGENAFDKYERGLVEPSGPTSQLLRLLDQHPELLEDLRESA

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789398, Length=118, Percent_Identity=32.2033898305085, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR022452
- InterPro:   IPR022453 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15625; Mature: 15494

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASKMDVPNTMVSPETGETLRRGVRPLIVTYKGKSITVELPGYYPDNGDDGIHVGDDMA
CCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCCEECCCCHH
ITDAALRILKEEIEGIPSPATIRRVREKLKLSQREAGGLLKVGENAFDKYERGLVEPSGP
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCC
TSQLLRLLDQHPELLEDLRESA
HHHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
AASKMDVPNTMVSPETGETLRRGVRPLIVTYKGKSITVELPGYYPDNGDDGIHVGDDMA
CCCCCCCCCCCCCCCCCHHHHCCCCEEEEEECCCEEEEECCCCCCCCCCCCEECCCCHH
ITDAALRILKEEIEGIPSPATIRRVREKLKLSQREAGGLLKVGENAFDKYERGLVEPSGP
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCEEECHHHHHHHHHCCCCCCCC
TSQLLRLLDQHPELLEDLRESA
HHHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]