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The map label for this gene is 92109749

Identifier: 92109749

GI number: 92109749

Start: 94062

End: 94697

Strand: Reverse

Name: 92109749

Synonym: Nham_4645

Alternate gene names: NA

Gene position: 94697-94062 (Counterclockwise)

Preceding gene: 92109758

Following gene: 92109748

Centisome position: 78.0

GC content: 59.12

Gene sequence:

>636_bases
ATGGCACCGGGCCGCCACAAGGATAATCCGACGTTGAGACTTGTTCGTGAAGGTGACACCAGCCGTCGTGCTGAGAATGC
CTCGACAAAGCGCGACGTCGAATGGTCGATCTACATGGCGCGGGCGCAGAGCGGCGACCAGGATGCCTATAGCCGGCTGC
TGACCGAGATCACGCCTTATCTGCGCACTTTAGCAGGTAGGCACCATCGCTCTCCCCAGGATGTCGAAGATACGATCCAG
GACATCCTTCTGACGATTCACTCAATTCGGCAGATCTACGATCCGACACGACCGTTCACGCCCTGGCTTGTCGCAATAGG
CCGCCGGCGGATCATCGATCGGCTGCGGCGGCAGGGGCGCTCGACCGTCCGCGAGACGCCCTTGAACGAAGACCATGAAA
CCATTGTGGAGGTTGAAGCGAACATAGAGACAAGAGCCGATGGACGCTCGCTGCGTGAGGCGGTCGACAAGCTGCCGCCA
GGCCAGCGGGAGGCCATCACCCTCCTGAAGCTCCAGGAGATGTCGTTGAAAGAAGCTGCGGAGCGAAGCGGAATGTCCAT
TGCGGCACTCAAAGTTGCGACACATCGGGCTCTGAAGAGCCTGCGGACGATTCTTGGCAAGGATGATAATTCGTGA

Upstream 100 bases:

>100_bases
AAGAAAGTTCCTGCCACAAGGCGCTGTCAGAGCTACGGTGGAGCAACGCGGCAAGACGAAACGTCGGATCGCGCCGCCAG
AACTATGAGGAATATGGCCG

Downstream 100 bases:

>100_bases
TCGCGACCTCGGACCTGATTGCATCTCTCAGCGCTCATGCGACACCCGTGCGCCGCCTTCGGCCCCCGCTTGTCCGGGCG
TGTTGCTGGCTCTCCCTAGC

Product: sigma-24 (FecI-like)

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Subunit; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Carq; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma Factor NccH

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MAPGRHKDNPTLRLVREGDTSRRAENASTKRDVEWSIYMARAQSGDQDAYSRLLTEITPYLRTLAGRHHRSPQDVEDTIQ
DILLTIHSIRQIYDPTRPFTPWLVAIGRRRIIDRLRRQGRSTVRETPLNEDHETIVEVEANIETRADGRSLREAVDKLPP
GQREAITLLKLQEMSLKEAAERSGMSIAALKVATHRALKSLRTILGKDDNS

Sequences:

>Translated_211_residues
MAPGRHKDNPTLRLVREGDTSRRAENASTKRDVEWSIYMARAQSGDQDAYSRLLTEITPYLRTLAGRHHRSPQDVEDTIQ
DILLTIHSIRQIYDPTRPFTPWLVAIGRRRIIDRLRRQGRSTVRETPLNEDHETIVEVEANIETRADGRSLREAVDKLPP
GQREAITLLKLQEMSLKEAAERSGMSIAALKVATHRALKSLRTILGKDDNS
>Mature_210_residues
APGRHKDNPTLRLVREGDTSRRAENASTKRDVEWSIYMARAQSGDQDAYSRLLTEITPYLRTLAGRHHRSPQDVEDTIQD
ILLTIHSIRQIYDPTRPFTPWLVAIGRRRIIDRLRRQGRSTVRETPLNEDHETIVEVEANIETRADGRSLREAVDKLPPG
QREAITLLKLQEMSLKEAAERSGMSIAALKVATHRALKSLRTILGKDDNS

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24050; Mature: 23918

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPGRHKDNPTLRLVREGDTSRRAENASTKRDVEWSIYMARAQSGDQDAYSRLLTEITPY
CCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCHHHEEEECCCCCCHHHHHHHHHHHHHH
LRTLAGRHHRSPQDVEDTIQDILLTIHSIRQIYDPTRPFTPWLVAIGRRRIIDRLRRQGR
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
STVRETPLNEDHETIVEVEANIETRADGRSLREAVDKLPPGQREAITLLKLQEMSLKEAA
HHHHHCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
ERSGMSIAALKVATHRALKSLRTILGKDDNS
HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
APGRHKDNPTLRLVREGDTSRRAENASTKRDVEWSIYMARAQSGDQDAYSRLLTEITPY
CCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCHHHEEEECCCCCCHHHHHHHHHHHHHH
LRTLAGRHHRSPQDVEDTIQDILLTIHSIRQIYDPTRPFTPWLVAIGRRRIIDRLRRQGR
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
STVRETPLNEDHETIVEVEANIETRADGRSLREAVDKLPPGQREAITLLKLQEMSLKEAA
HHHHHCCCCCCCHHEEEEECCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
ERSGMSIAALKVATHRALKSLRTILGKDDNS
HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA