Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is yngG [H]
Identifier: 91790346
GI number: 91790346
Start: 4768926
End: 4771115
Strand: Reverse
Name: yngG [H]
Synonym: Bpro_4514
Alternate gene names: 91790346
Gene position: 4771115-4768926 (Counterclockwise)
Preceding gene: 91790350
Following gene: 91790345
Centisome position: 91.75
GC content: 65.98
Gene sequence:
>2190_bases ATGAATGCAACCATGTCAAATTCTCACGTATTGATCAGTGAAGTCGGCCCCCGCGACGGTCTGCAATCGGTCAAGGCCAC CATGCCGACAGCCGACAAGCTGCGCTGGATTGACGCGCTTTACAAAGCCGGCGTGCGCGAAATTGAAGTGGCTTCCTTCG TGCCGGCCCGGCTGCTGCCGCAGATGGCCGATGCCGCTGAGGTGGTGCGCCATGCGATCACGCTGCCCGGCCTCACGGTG ATGGCGCTGGTGCCCAACCGCCGCGGCGCGGAGGCGGCGCTGGCGGCCGGCGTGCACAAGCTGACGATGCCGGTGTCGGC CAGTGCCGCGCATTCGCTGGCCAATGTGCGCAAGACGCGCGAAGAGATGGTCGAGGAAGTGCGCGCCATCTCTGACCTGC GCCGCGATCTCGCGCCTCACGTCAGGCTCGAAGCCGCCATTTCCACCGCCTTCGGTTGCACGCTGCAGGGCGAGGTGCCC GAAGACGACGTGATCCGGCTGGCCGCGCAATGCATTGCGGCCGGTGCCGACGAGTCGGGCCTGTCGGACACCGTCGGCTA TGCCAACCCGGCGCAGGTGCGCCGCCTGTTCCGGCGCCTGCGTGCCGAAATCGGCCGCCACGCCGGCGCGGCCCACATGC ACAACACCCGCGGCCTGGGCCTGGCCAATTGCCTGGCCGCGTATGACGAAGGCGTTCGCACCTTCGACGCGTCGCTCGGT GGCCTGGGCGGCTGCCCCTATGCGCCGGGCGCGTCGGGCAACGTCGTCACCGAAGACCTGGTTTTCATGTTCGAGGCCAT GGGCGTGCCGACCGGCATTGATCTCGAAAAACTCATGGCCGCGCGCGCGCCGCTGATGGCCGGGCTGCCGGGCGAGCCGG TGTATGGCATGACACCCGAGGCCGGCCTGCCCAGGGGCTTTGTCCAGGGCGCACGCATGACGGCAACTGCCACACCCATC CCTGACGAAAGCAACAACAGCAGCAACAGCGAGATCAGCGACACACCGCTGCCCTACGCCGGCATCCGCGTCGTCGAATT CACCCACATGGTGATGGGCCCGACCTGCGGCCTGCTGCTGGGCGACCTGGGCGCCGAGGTCATCAAGGTGGAGCCGGTCG AGGGCGACAGCACGCGCCGCCTGCTGGGCTCGGGCGCCGGATTTTTCCCGACCTTCAACCGCAACAAGAAAAGCATTGCG CTCGACCTGAAGACGCCCGAAGGCGTGGAGGCCGCGCTGCGCCTGATTGCCACGGCAGACATCGTCAGCGAGAACTTCAA ACCCGGCACCATGAAGAAGCTGGGTCTGGACTACGAGACGCTGAAGCAGCGCCACCCGCGCCTGATCTATGTCAGTCACA AGGGTTTTTTGCCCGGGCCTTACGAGCATCGCACCGCCCTGGATGAAGTGGTGCAGATGATGGGCGGGCTGGCCTACATG ACGGGCCGCAGCGGCGACCCCCTGCGCGCAGGCACCAGCGTCAACGACATCATGGGCGGCATGTTTGGCGCCATAGGGGC GATGGCCGCCTTGCGCCAGCGCGAACGCACCGGGCTGGGCACGGAGGTGCAGTCGGCCTTGTTTGAAAACAATGTGTTCC TGGTGGGCCAGCACATGATGCAGTTCGCCGCCACCGGCCATGCCGCCGCGCCCATGCCCAGCCGCATTTCGGCGTGGGCG GTGTACGACGTGTTCACCGTGAAAGACGGCGAACAGATTTTTCTGGCGGCCGTCAGCGACAAGCAATGGGCGATTTTCTG CAAGGCCTTTGGGCTGGACGAGCTGCTGGTCGACCCGCGCCTCAAAACCAACAACGACCGCGTGCGCGCCCGGGAGTGGA TGATGCCCATCCTGCGCTCGCACCTGGCCGAGCGCAGCGCGGCTGAACTCCGCGCGGTGTTTGAAGCCAACGAATTGCCT TTTGCACCCATCGTGCGGCCTGAAGAGCTTTTTGGGGATCCGCACCTGAACGCGACCGGTGGCCTGGCGCCCGTCCGGAT GAACGACGGCAGCCAGTCCAAAGTGCCGCTGATGCCCTTCACGCTGGGCGGCAAACGGCCCGGTATCCGGCTGCAGCCGC CGCTGCTGGGCGAGCACAGCCGCGAATTGCTGCTGGAGCTGGGCTATGGCGAAGACGCCATCCAGGCTTTCCAGAATTCC GCCGAAAGCATCGCTCAAAGCAACCGTTAA
Upstream 100 bases:
>100_bases GATCATGAAGCGGACCTTGCCGCTGGACGCTTGACAAGCGTCCGAGCTTCAGTGATTATTTCAACAGAAAGAACGACGTT CTATCTTACAGAATTATTTA
Downstream 100 bases:
>100_bases ACCCCAGACCCCCACCCCCAAGAAACCACACCCGGAGACACACCCTTGAACTTCAAACGACGCACCCTGATGACCACGAC CCTGATGACGGCGGCACTGT
Product: hydroxymethylglutaryl-CoA lyase
Products: NA
Alternate protein names: HL; HMG-CoA lyase; 3-hydroxy-3-methylglutarate-CoA lyase [H]
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MNATMSNSHVLISEVGPRDGLQSVKATMPTADKLRWIDALYKAGVREIEVASFVPARLLPQMADAAEVVRHAITLPGLTV MALVPNRRGAEAALAAGVHKLTMPVSASAAHSLANVRKTREEMVEEVRAISDLRRDLAPHVRLEAAISTAFGCTLQGEVP EDDVIRLAAQCIAAGADESGLSDTVGYANPAQVRRLFRRLRAEIGRHAGAAHMHNTRGLGLANCLAAYDEGVRTFDASLG GLGGCPYAPGASGNVVTEDLVFMFEAMGVPTGIDLEKLMAARAPLMAGLPGEPVYGMTPEAGLPRGFVQGARMTATATPI PDESNNSSNSEISDTPLPYAGIRVVEFTHMVMGPTCGLLLGDLGAEVIKVEPVEGDSTRRLLGSGAGFFPTFNRNKKSIA LDLKTPEGVEAALRLIATADIVSENFKPGTMKKLGLDYETLKQRHPRLIYVSHKGFLPGPYEHRTALDEVVQMMGGLAYM TGRSGDPLRAGTSVNDIMGGMFGAIGAMAALRQRERTGLGTEVQSALFENNVFLVGQHMMQFAATGHAAAPMPSRISAWA VYDVFTVKDGEQIFLAAVSDKQWAIFCKAFGLDELLVDPRLKTNNDRVRAREWMMPILRSHLAERSAAELRAVFEANELP FAPIVRPEELFGDPHLNATGGLAPVRMNDGSQSKVPLMPFTLGGKRPGIRLQPPLLGEHSRELLLELGYGEDAIQAFQNS AESIAQSNR
Sequences:
>Translated_729_residues MNATMSNSHVLISEVGPRDGLQSVKATMPTADKLRWIDALYKAGVREIEVASFVPARLLPQMADAAEVVRHAITLPGLTV MALVPNRRGAEAALAAGVHKLTMPVSASAAHSLANVRKTREEMVEEVRAISDLRRDLAPHVRLEAAISTAFGCTLQGEVP EDDVIRLAAQCIAAGADESGLSDTVGYANPAQVRRLFRRLRAEIGRHAGAAHMHNTRGLGLANCLAAYDEGVRTFDASLG GLGGCPYAPGASGNVVTEDLVFMFEAMGVPTGIDLEKLMAARAPLMAGLPGEPVYGMTPEAGLPRGFVQGARMTATATPI PDESNNSSNSEISDTPLPYAGIRVVEFTHMVMGPTCGLLLGDLGAEVIKVEPVEGDSTRRLLGSGAGFFPTFNRNKKSIA LDLKTPEGVEAALRLIATADIVSENFKPGTMKKLGLDYETLKQRHPRLIYVSHKGFLPGPYEHRTALDEVVQMMGGLAYM TGRSGDPLRAGTSVNDIMGGMFGAIGAMAALRQRERTGLGTEVQSALFENNVFLVGQHMMQFAATGHAAAPMPSRISAWA VYDVFTVKDGEQIFLAAVSDKQWAIFCKAFGLDELLVDPRLKTNNDRVRAREWMMPILRSHLAERSAAELRAVFEANELP FAPIVRPEELFGDPHLNATGGLAPVRMNDGSQSKVPLMPFTLGGKRPGIRLQPPLLGEHSRELLLELGYGEDAIQAFQNS AESIAQSNR >Mature_729_residues MNATMSNSHVLISEVGPRDGLQSVKATMPTADKLRWIDALYKAGVREIEVASFVPARLLPQMADAAEVVRHAITLPGLTV MALVPNRRGAEAALAAGVHKLTMPVSASAAHSLANVRKTREEMVEEVRAISDLRRDLAPHVRLEAAISTAFGCTLQGEVP EDDVIRLAAQCIAAGADESGLSDTVGYANPAQVRRLFRRLRAEIGRHAGAAHMHNTRGLGLANCLAAYDEGVRTFDASLG GLGGCPYAPGASGNVVTEDLVFMFEAMGVPTGIDLEKLMAARAPLMAGLPGEPVYGMTPEAGLPRGFVQGARMTATATPI PDESNNSSNSEISDTPLPYAGIRVVEFTHMVMGPTCGLLLGDLGAEVIKVEPVEGDSTRRLLGSGAGFFPTFNRNKKSIA LDLKTPEGVEAALRLIATADIVSENFKPGTMKKLGLDYETLKQRHPRLIYVSHKGFLPGPYEHRTALDEVVQMMGGLAYM TGRSGDPLRAGTSVNDIMGGMFGAIGAMAALRQRERTGLGTEVQSALFENNVFLVGQHMMQFAATGHAAAPMPSRISAWA VYDVFTVKDGEQIFLAAVSDKQWAIFCKAFGLDELLVDPRLKTNNDRVRAREWMMPILRSHLAERSAAELRAVFEANELP FAPIVRPEELFGDPHLNATGGLAPVRMNDGSQSKVPLMPFTLGGKRPGIRLQPPLLGEHSRELLLELGYGEDAIQAFQNS AESIAQSNR
Specific function: Involved in the catabolism of branched amino acids such as leucine (Probable) [H]
COG id: COG1804
COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HMG-CoA lyase family [H]
Homologues:
Organism=Homo sapiens, GI300863128, Length=399, Percent_Identity=32.5814536340852, Blast_Score=201, Evalue=1e-51, Organism=Homo sapiens, GI62198232, Length=272, Percent_Identity=38.9705882352941, Blast_Score=195, Evalue=2e-49, Organism=Homo sapiens, GI109150422, Length=272, Percent_Identity=38.2352941176471, Blast_Score=194, Evalue=3e-49, Organism=Homo sapiens, GI109150427, Length=272, Percent_Identity=38.2352941176471, Blast_Score=193, Evalue=5e-49, Organism=Homo sapiens, GI300863124, Length=421, Percent_Identity=32.3040380047506, Blast_Score=192, Evalue=7e-49, Organism=Homo sapiens, GI300863126, Length=389, Percent_Identity=30.3341902313625, Blast_Score=160, Evalue=3e-39, Organism=Homo sapiens, GI13376042, Length=421, Percent_Identity=29.4536817102138, Blast_Score=150, Evalue=3e-36, Organism=Homo sapiens, GI266456254, Length=399, Percent_Identity=28.0701754385965, Blast_Score=128, Evalue=2e-29, Organism=Homo sapiens, GI42794625, Length=399, Percent_Identity=28.0701754385965, Blast_Score=128, Evalue=2e-29, Organism=Homo sapiens, GI260654708, Length=107, Percent_Identity=46.7289719626168, Blast_Score=104, Evalue=2e-22, Organism=Homo sapiens, GI266458393, Length=277, Percent_Identity=29.6028880866426, Blast_Score=97, Evalue=5e-20, Organism=Homo sapiens, GI266458397, Length=270, Percent_Identity=29.6296296296296, Blast_Score=95, Evalue=2e-19, Organism=Homo sapiens, GI266458395, Length=117, Percent_Identity=38.4615384615385, Blast_Score=77, Evalue=4e-14, Organism=Homo sapiens, GI42822893, Length=117, Percent_Identity=38.4615384615385, Blast_Score=77, Evalue=4e-14, Organism=Escherichia coli, GI87082093, Length=327, Percent_Identity=34.2507645259939, Blast_Score=184, Evalue=2e-47, Organism=Escherichia coli, GI1788717, Length=413, Percent_Identity=31.7191283292978, Blast_Score=155, Evalue=1e-38, Organism=Escherichia coli, GI1786222, Length=391, Percent_Identity=27.3657289002558, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1786261, Length=283, Percent_Identity=24.3816254416961, Blast_Score=68, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17510563, Length=269, Percent_Identity=36.0594795539033, Blast_Score=180, Evalue=3e-45, Organism=Caenorhabditis elegans, GI32564160, Length=318, Percent_Identity=23.8993710691824, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI115535051, Length=318, Percent_Identity=21.6981132075472, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=34.6835443037975, Blast_Score=218, Evalue=2e-56, Organism=Drosophila melanogaster, GI24582381, Length=276, Percent_Identity=39.1304347826087, Blast_Score=200, Evalue=3e-51, Organism=Drosophila melanogaster, GI24585488, Length=323, Percent_Identity=26.625386996904, Blast_Score=107, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR000891 [H]
Pfam domain/function: PF00682 HMGL-like [H]
EC number: =4.1.3.4 [H]
Molecular weight: Translated: 78252; Mature: 78252
Theoretical pI: Translated: 6.47; Mature: 6.47
Prosite motif: PS50991 PYR_CT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNATMSNSHVLISEVGPRDGLQSVKATMPTADKLRWIDALYKAGVREIEVASFVPARLLP CCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEHHHHHCHHHHHH QMADAAEVVRHAITLPGLTVMALVPNRRGAEAALAAGVHKLTMPVSASAAHSLANVRKTR HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCHHHEECCCCHHHHHHHHHHHHHH EEMVEEVRAISDLRRDLAPHVRLEAAISTAFGCTLQGEVPEDDVIRLAAQCIAAGADESG HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHCCCCCCC LSDTVGYANPAQVRRLFRRLRAEIGRHAGAAHMHNTRGLGLANCLAAYDEGVRTFDASLG CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC GLGGCPYAPGASGNVVTEDLVFMFEAMGVPTGIDLEKLMAARAPLMAGLPGEPVYGMTPE CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHCCCCCCCCCCCCCC AGLPRGFVQGARMTATATPIPDESNNSSNSEISDTPLPYAGIRVVEFTHMVMGPTCGLLL CCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCHHHHHH GDLGAEVIKVEPVEGDSTRRLLGSGAGFFPTFNRNKKSIALDLKTPEGVEAALRLIATAD HHCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH IVSENFKPGTMKKLGLDYETLKQRHPRLIYVSHKGFLPGPYEHRTALDEVVQMMGGLAYM HHHCCCCCCCHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEE TGRSGDPLRAGTSVNDIMGGMFGAIGAMAALRQRERTGLGTEVQSALFENNVFLVGQHMM CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEHHHH QFAATGHAAAPMPSRISAWAVYDVFTVKDGEQIFLAAVSDKQWAIFCKAFGLDELLVDPR HHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCEEEEEECCCCHHHHCCCC LKTNNDRVRAREWMMPILRSHLAERSAAELRAVFEANELPFAPIVRPEELFGDPHLNATG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCC GLAPVRMNDGSQSKVPLMPFTLGGKRPGIRLQPPLLGEHSRELLLELGYGEDAIQAFQNS CEEEEEECCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCHHHHEECCCCHHHHHHHHHH AESIAQSNR HHHHHHCCC >Mature Secondary Structure MNATMSNSHVLISEVGPRDGLQSVKATMPTADKLRWIDALYKAGVREIEVASFVPARLLP CCCCCCCCEEEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEHHHHHCHHHHHH QMADAAEVVRHAITLPGLTVMALVPNRRGAEAALAAGVHKLTMPVSASAAHSLANVRKTR HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHCHHHEECCCCHHHHHHHHHHHHHH EEMVEEVRAISDLRRDLAPHVRLEAAISTAFGCTLQGEVPEDDVIRLAAQCIAAGADESG HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHCCCCCCC LSDTVGYANPAQVRRLFRRLRAEIGRHAGAAHMHNTRGLGLANCLAAYDEGVRTFDASLG CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHCC GLGGCPYAPGASGNVVTEDLVFMFEAMGVPTGIDLEKLMAARAPLMAGLPGEPVYGMTPE CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHCCCCCCCCCCCCCC AGLPRGFVQGARMTATATPIPDESNNSSNSEISDTPLPYAGIRVVEFTHMVMGPTCGLLL CCCCHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCHHHHHH GDLGAEVIKVEPVEGDSTRRLLGSGAGFFPTFNRNKKSIALDLKTPEGVEAALRLIATAD HHCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHH IVSENFKPGTMKKLGLDYETLKQRHPRLIYVSHKGFLPGPYEHRTALDEVVQMMGGLAYM HHHCCCCCCCHHHHCCCHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEE TGRSGDPLRAGTSVNDIMGGMFGAIGAMAALRQRERTGLGTEVQSALFENNVFLVGQHMM CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEHHHH QFAATGHAAAPMPSRISAWAVYDVFTVKDGEQIFLAAVSDKQWAIFCKAFGLDELLVDPR HHHHCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCEEEEEECCCCHHHHCCCC LKTNNDRVRAREWMMPILRSHLAERSAAELRAVFEANELPFAPIVRPEELFGDPHLNATG CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCCC GLAPVRMNDGSQSKVPLMPFTLGGKRPGIRLQPPLLGEHSRELLLELGYGEDAIQAFQNS CEEEEEECCCCCCCCCEEEEECCCCCCCCEECCCCCCCCCHHHHEECCCCHHHHHHHHHH AESIAQSNR HHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387222; 9384377 [H]