Definition | Polaromonas sp. JS666 chromosome, complete genome. |
---|---|
Accession | NC_007948 |
Length | 5,200,264 |
Click here to switch to the map view.
The map label for this gene is 91790345
Identifier: 91790345
GI number: 91790345
Start: 4767864
End: 4768880
Strand: Reverse
Name: 91790345
Synonym: Bpro_4513
Alternate gene names: NA
Gene position: 4768880-4767864 (Counterclockwise)
Preceding gene: 91790346
Following gene: 91790344
Centisome position: 91.7
GC content: 63.91
Gene sequence:
>1017_bases TTGAACTTCAAACGACGCACCCTGATGACCACGACCCTGATGACGGCGGCACTGTCTGGCCTGGCCAGCCTGAACGGCGC GGCCACCGCCCAAACCGCCGCTTCGACAAGCTCAGGACAGGCCTGGCCCGACAAGCCGGTGCGCATTGTGGTGCCTTATG CACCGGGCGGAACGACGGACTACGCCGCCCGTCAAATAGCGCAAAAGCTGACGGAGCAGACCCGGCAGTCCTTCTATGTC GAGAACAAGGCTGGTGCCAGCGGCACCATAGGCACCGACCTGGTGGCCAAGGCGGCGCCCGACGGCTACACGCTGCTGAC CAACGACACCACGTACGCGATGCTGCCTTCGCTGTTTGCCAAACTGCCTTGGGATCACGCCAACGGCCTGGTGCCCGTGA CCACCATCGCGCAGACGCCGGTAGTGCTGGTGGTGGGCAACGCCTCGCCTTTTAAAACGCTGGCCGAACTGGTTGCCCAT GCACAAAAAAATCCGGGAAAGCTCAACTTTGGCTCGGGCGGCGCGGGCAGCTCCACCCACCTTTCGGCGGAACTGCTCAA GAAGGAAGGCAGGCTTTTCATCACACACATCCCTTACAAGGGGGCCGGCGACGCTATGCTGGGCGTGATGTCCGGCCAGG TGGACCTGCTTATCACCGCCAGCCCCACGGCGATTCCGCAGATCAGGGGTGGCAAGGTGCGCGCACTGGCCGTCACCGGC GACAAACGCCTGCCCAGCCTGCCCGATGTGCCGACCTTCAAGGAAGCGGGCTTGCGCGGCTACACGGTCACCAACTGGTT TGGCCTGGCAGCCCCGAGGGGAACGCCTCCCGCCATCGTGGACAAGCTGCAGGCCGAGATAAAAAAGGCCTTGGCCGATC CGGCCTTGCGTGAGCGCTTTGCCCAGCAGGGCGCACAGCCTGGCGGCATGAGCCCTGCCGATTTTGCGGCCTTCATCAAG CAGGAAACCGTCATCTGGAGTGCCGTCGCGAAGCTGGCGAGCGTCAAGCCCGAGTAA
Upstream 100 bases:
>100_bases CGCCATCCAGGCTTTCCAGAATTCCGCCGAAAGCATCGCTCAAAGCAACCGTTAAACCCCAGACCCCCACCCCCAAGAAA CCACACCCGGAGACACACCC
Downstream 100 bases:
>100_bases GCTGGCACCGCAGCAGGCACTCAACACGGCACCTTCATCATGTGGAACTTGTCCTTCACGCCTCCCGAACTCATTGAAGC CCGCGTGCTGACGCGCCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MNFKRRTLMTTTLMTAALSGLASLNGAATAQTAASTSSGQAWPDKPVRIVVPYAPGGTTDYAARQIAQKLTEQTRQSFYV ENKAGASGTIGTDLVAKAAPDGYTLLTNDTTYAMLPSLFAKLPWDHANGLVPVTTIAQTPVVLVVGNASPFKTLAELVAH AQKNPGKLNFGSGGAGSSTHLSAELLKKEGRLFITHIPYKGAGDAMLGVMSGQVDLLITASPTAIPQIRGGKVRALAVTG DKRLPSLPDVPTFKEAGLRGYTVTNWFGLAAPRGTPPAIVDKLQAEIKKALADPALRERFAQQGAQPGGMSPADFAAFIK QETVIWSAVAKLASVKPE
Sequences:
>Translated_338_residues MNFKRRTLMTTTLMTAALSGLASLNGAATAQTAASTSSGQAWPDKPVRIVVPYAPGGTTDYAARQIAQKLTEQTRQSFYV ENKAGASGTIGTDLVAKAAPDGYTLLTNDTTYAMLPSLFAKLPWDHANGLVPVTTIAQTPVVLVVGNASPFKTLAELVAH AQKNPGKLNFGSGGAGSSTHLSAELLKKEGRLFITHIPYKGAGDAMLGVMSGQVDLLITASPTAIPQIRGGKVRALAVTG DKRLPSLPDVPTFKEAGLRGYTVTNWFGLAAPRGTPPAIVDKLQAEIKKALADPALRERFAQQGAQPGGMSPADFAAFIK QETVIWSAVAKLASVKPE >Mature_338_residues MNFKRRTLMTTTLMTAALSGLASLNGAATAQTAASTSSGQAWPDKPVRIVVPYAPGGTTDYAARQIAQKLTEQTRQSFYV ENKAGASGTIGTDLVAKAAPDGYTLLTNDTTYAMLPSLFAKLPWDHANGLVPVTTIAQTPVVLVVGNASPFKTLAELVAH AQKNPGKLNFGSGGAGSSTHLSAELLKKEGRLFITHIPYKGAGDAMLGVMSGQVDLLITASPTAIPQIRGGKVRALAVTG DKRLPSLPDVPTFKEAGLRGYTVTNWFGLAAPRGTPPAIVDKLQAEIKKALADPALRERFAQQGAQPGGMSPADFAAFIK QETVIWSAVAKLASVKPE
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 35379; Mature: 35379
Theoretical pI: Translated: 10.35; Mature: 10.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFKRRTLMTTTLMTAALSGLASLNGAATAQTAASTSSGQAWPDKPVRIVVPYAPGGTTD CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHH YAARQIAQKLTEQTRQSFYVENKAGASGTIGTDLVAKAAPDGYTLLTNDTTYAMLPSLFA HHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHH KLPWDHANGLVPVTTIAQTPVVLVVGNASPFKTLAELVAHAQKNPGKLNFGSGGAGSSTH HCCCCCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHH LSAELLKKEGRLFITHIPYKGAGDAMLGVMSGQVDLLITASPTAIPQIRGGKVRALAVTG HHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCEEEEEEEEC DKRLPSLPDVPTFKEAGLRGYTVTNWFGLAAPRGTPPAIVDKLQAEIKKALADPALRERF CCCCCCCCCCCCHHHCCCCCEEEECEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH AQQGAQPGGMSPADFAAFIKQETVIWSAVAKLASVKPE HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MNFKRRTLMTTTLMTAALSGLASLNGAATAQTAASTSSGQAWPDKPVRIVVPYAPGGTTD CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCHH YAARQIAQKLTEQTRQSFYVENKAGASGTIGTDLVAKAAPDGYTLLTNDTTYAMLPSLFA HHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCEEEEECCCHHHHHHHHHH KLPWDHANGLVPVTTIAQTPVVLVVGNASPFKTLAELVAHAQKNPGKLNFGSGGAGSSTH HCCCCCCCCCEEEEECCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHH LSAELLKKEGRLFITHIPYKGAGDAMLGVMSGQVDLLITASPTAIPQIRGGKVRALAVTG HHHHHHHHCCCEEEEECCCCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCEEEEEEEEC DKRLPSLPDVPTFKEAGLRGYTVTNWFGLAAPRGTPPAIVDKLQAEIKKALADPALRERF CCCCCCCCCCCCHHHCCCCCEEEECEEECCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH AQQGAQPGGMSPADFAAFIKQETVIWSAVAKLASVKPE HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]