Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is aroE [H]
Identifier: 91790335
GI number: 91790335
Start: 4758436
End: 4759263
Strand: Reverse
Name: aroE [H]
Synonym: Bpro_4503
Alternate gene names: 91790335
Gene position: 4759263-4758436 (Counterclockwise)
Preceding gene: 91790336
Following gene: 91790334
Centisome position: 91.52
GC content: 65.22
Gene sequence:
>828_bases GTGGGGGCCACATCTCTTTATGCCGTCATTGGCAACCCCATCCAGCAGAGCAAATCGCCGCTGATCCACGGCATGTTTGC GCAAGCCACAGGGCAAGACATTGAATACACCGCGATCGAGGGGCCATCGGGTGGCTTCGCGGGTGCTGTCGATGCTTTCC GCGCTGCGGGCGGCCTGGGCCTGAACATCACTGCGCCATTCAAGCTCGACGCCTTTGCCTACGCCACCGAACGCTCCGCG CGGGCGCAGCTCGCCGGTGCCGTCAATGCCTTGAAATTTGACGGAGACCGCGTGCTGGCCGAGAACTTCGACGGTGTCGG CCTGGTGCGCGACGTGACCCATAACCTGGGCTGCCCGCTGAAGGGCAAACGCGTGTTGCTGCTGGGTGCTGGTGGCGCAG CCCGAGGCGCGCTGCTGCCCCTCCTGGAGCAGGCACCGGCAGAGCTGGTGATCGCCAACCGCAGCGTGGACAAGGCACTG GAGCTGGCAAAAATTGGCGCGGCCAGAGGTAAGGTGCGGGGCTGTGCCTACACCGACCTGGTCGGGCAAACCTTTGATGT GGTGTTCAACGCCACCTCGGCCAGCCTGCGTGCCGAGCTGCCGCCGGTACCGGCCGGCGTATTTTCCAATTGCGCCCTGG CGTATGAGCTGGCGTATGGCAAGGGCCTGACGCCCTTCCTGCGCCTGGCGCAAAACGCTGGCGTCAAACAGCTGGCCGAC GGTGTGGGCATGCTGGCCGAGCAGGCCGCCGAAGCTTTTGCCTGGTGGCGTGGCGTGCGTCCCGACACCCTTGCGGTGAT CGGGAAGCTGACGGTTCCGCTGGTGTAA
Upstream 100 bases:
>100_bases AGTCACAAACATGACTACTGCCGCAGCGCCGGGCCGCCCCAAGCAAGGCACGGCCCCTTTTTCCAATGATAGGGGCAGCG TATTACGCGAAGCGAAAAGC
Downstream 100 bases:
>100_bases ATAACCGGCTGTCGTGCGCTGTCCAACCCTTCCGGATGACCCCTTCCATGTGCTGCACCGGCCCTCTATACTTCGGGAAT GAACGAGTTAGTACATTCCG
Product: shikimate dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 275; Mature: 274
Protein sequence:
>275_residues MGATSLYAVIGNPIQQSKSPLIHGMFAQATGQDIEYTAIEGPSGGFAGAVDAFRAAGGLGLNITAPFKLDAFAYATERSA RAQLAGAVNALKFDGDRVLAENFDGVGLVRDVTHNLGCPLKGKRVLLLGAGGAARGALLPLLEQAPAELVIANRSVDKAL ELAKIGAARGKVRGCAYTDLVGQTFDVVFNATSASLRAELPPVPAGVFSNCALAYELAYGKGLTPFLRLAQNAGVKQLAD GVGMLAEQAAEAFAWWRGVRPDTLAVIGKLTVPLV
Sequences:
>Translated_275_residues MGATSLYAVIGNPIQQSKSPLIHGMFAQATGQDIEYTAIEGPSGGFAGAVDAFRAAGGLGLNITAPFKLDAFAYATERSA RAQLAGAVNALKFDGDRVLAENFDGVGLVRDVTHNLGCPLKGKRVLLLGAGGAARGALLPLLEQAPAELVIANRSVDKAL ELAKIGAARGKVRGCAYTDLVGQTFDVVFNATSASLRAELPPVPAGVFSNCALAYELAYGKGLTPFLRLAQNAGVKQLAD GVGMLAEQAAEAFAWWRGVRPDTLAVIGKLTVPLV >Mature_274_residues GATSLYAVIGNPIQQSKSPLIHGMFAQATGQDIEYTAIEGPSGGFAGAVDAFRAAGGLGLNITAPFKLDAFAYATERSAR AQLAGAVNALKFDGDRVLAENFDGVGLVRDVTHNLGCPLKGKRVLLLGAGGAARGALLPLLEQAPAELVIANRSVDKALE LAKIGAARGKVRGCAYTDLVGQTFDVVFNATSASLRAELPPVPAGVFSNCALAYELAYGKGLTPFLRLAQNAGVKQLADG VGMLAEQAAEAFAWWRGVRPDTLAVIGKLTVPLV
Specific function: Aromatic amino acids biosynthesis; shikimate pathway; fourth step. [C]
COG id: COG0169
COG function: function code E; Shikimate 5-dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the shikimate dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1789675, Length=269, Percent_Identity=45.3531598513011, Blast_Score=217, Evalue=8e-58, Organism=Escherichia coli, GI1787983, Length=285, Percent_Identity=30.5263157894737, Blast_Score=95, Evalue=4e-21, Organism=Saccharomyces cerevisiae, GI6320332, Length=284, Percent_Identity=26.7605633802817, Blast_Score=69, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR011342 - InterPro: IPR013708 - InterPro: IPR022893 - InterPro: IPR006151 [H]
Pfam domain/function: PF01488 Shikimate_DH; PF08501 Shikimate_dh_N [H]
EC number: =1.1.1.25 [H]
Molecular weight: Translated: 28420; Mature: 28289
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGATSLYAVIGNPIQQSKSPLIHGMFAQATGQDIEYTAIEGPSGGFAGAVDAFRAAGGLG CCCCEEEHHHCCHHHHCCCCHHEEHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCC LNITAPFKLDAFAYATERSARAQLAGAVNALKFDGDRVLAENFDGVGLVRDVTHNLGCPL EEEECCCEECHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCCCCHHHHHHHHCCCCC KGKRVLLLGAGGAARGALLPLLEQAPAELVIANRSVDKALELAKIGAARGKVRGCAYTDL CCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHH VGQTFDVVFNATSASLRAELPPVPAGVFSNCALAYELAYGKGLTPFLRLAQNAGVKQLAD HCCCEEEEEECCCHHHEECCCCCCCHHHHCHHEEEEECCCCCCHHHHHHHHCCCHHHHHH GVGMLAEQAAEAFAWWRGVRPDTLAVIGKLTVPLV HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC >Mature Secondary Structure GATSLYAVIGNPIQQSKSPLIHGMFAQATGQDIEYTAIEGPSGGFAGAVDAFRAAGGLG CCCEEEHHHCCHHHHCCCCHHEEHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCC LNITAPFKLDAFAYATERSARAQLAGAVNALKFDGDRVLAENFDGVGLVRDVTHNLGCPL EEEECCCEECHHHHHHHHHHHHHHHHHHHHEEECCCEEEECCCCCCCHHHHHHHHCCCCC KGKRVLLLGAGGAARGALLPLLEQAPAELVIANRSVDKALELAKIGAARGKVRGCAYTDL CCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHH VGQTFDVVFNATSASLRAELPPVPAGVFSNCALAYELAYGKGLTPFLRLAQNAGVKQLAD HCCCEEEEEECCCHHHEECCCCCCCHHHHCHHEEEEECCCCCCHHHHHHHHCCCHHHHHH GVGMLAEQAAEAFAWWRGVRPDTLAVIGKLTVPLV HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA