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The map label for this gene is yfdE [H]

Identifier: 91790336

GI number: 91790336

Start: 4759350

End: 4760588

Strand: Reverse

Name: yfdE [H]

Synonym: Bpro_4504

Alternate gene names: 91790336

Gene position: 4760588-4759350 (Counterclockwise)

Preceding gene: 91790337

Following gene: 91790335

Centisome position: 91.55

GC content: 64.0

Gene sequence:

>1239_bases
ATGACTGAACCATCACCCACCCAACCCGCGCAAGCGCTGCCGCTGGCAGGCATACGCGTCATCGACTACAGCCACTTTCT
GGCCGGCCCGCACATGTCGCGTTGCCTGAGCGCGATGGGTGCCGAGGTCATCAAGGTCGAGCGGCCCGTGGCGGGCGATG
CCGGGCGTGCCAGCCCGACCATCGTCCAGGGGCAGAGCGGCTACTTCATGCAGCAGAACACGGGCAAGCAGGGCCTGTGC
ATCAACCTGCGTGACCCGCGCGGCCTGGACATGATGCACAAGCTCACCGACAGCGCCGACGTGTTTGTCGAGAACTACCG
CCCCGGTGCATTGAACAAACTGGGCTTGGGGTATGAAGAGCTTTCCGGGCGCAACCCCAAACTCGTCTATTGCTCGGTCT
CGGCCTATGGGCACACAGGGCCAGACTCTCACCGACCCGGCTTCGGTTTGATCGCCGAAGCCAAGAGCGGCGCCATGTCG
CTGATCGGTGTGCCGGGCGAGCCGCCGCCGCTGTTTCGCATGCCGATCGCCGACATGTATGCCGGCATGCATGGTGTGTC
GGCGATTTGCGCCGCGCTGTTTGGCCGCGTGAACAGCGGCCGCGGGCAGCACATTGACATTGCCCTGTACGACTGCATGA
TCTCCATGCACGACTTCGCCGCCCAGAGTTATTTGATGAGCGGCGGCAAGGAGTTGCCGGTGCAGACCGGCCACGACCTG
CCGCAGAGCACGGTGTATGGCGCGTTTTCCGCCAACGATGGTTATCTGGTGATTGCTGCGCAGATGACAGACACCTGGAA
GAGCCTGGCCCGGCTGATAGGCGGCGAGGACTATGCGGCGGACACCCGCCTGCACGACCAGGCCGGGCGCAATGCCAACC
GCGAGGCCATCCTGGCCAGGGTGACAACCTGGACGAAGGCCCATTCGGTTCAGGCCTGTTGCGCGGCGCTGGACGCTGCC
GGTGTTCCGGCCGCGCCCGTGCAAACCATTGACCAGGTGCTCAGCGACCCGCAAACCATTGCGCGGGGCATGGTGGTGGA
GCAAGATCACCCGGTGCTGGGCAAGATCAGGCTGCCCAATCTGCCCTTTCGCTTCTCCGAATGCGACACCTCGCTCAGCT
ATCCGGCGCCACTGCTGGGTCAGCACAATCGCGAGATCGCGGCGAGCGTGGGCTTCAGTTCGGTCGAGATCGACGCCATG
GAACGCGACGGCGTTCTGTATTCGGAGTCACAAACATGA

Upstream 100 bases:

>100_bases
GCAGCGGCTTCCTGAACCCCCTTCAATCGCCATCAACACCACCAACACCATCACAAATAGCTTATTGCGCCCGCTCCATT
TGGGCCGAGAGGACTTTTAA

Downstream 100 bases:

>100_bases
CTACTGCCGCAGCGCCGGGCCGCCCCAAGCAAGGCACGGCCCCTTTTTCCAATGATAGGGGCAGCGTATTACGCGAAGCG
AAAAGCGTGGGGGCCACATC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MTEPSPTQPAQALPLAGIRVIDYSHFLAGPHMSRCLSAMGAEVIKVERPVAGDAGRASPTIVQGQSGYFMQQNTGKQGLC
INLRDPRGLDMMHKLTDSADVFVENYRPGALNKLGLGYEELSGRNPKLVYCSVSAYGHTGPDSHRPGFGLIAEAKSGAMS
LIGVPGEPPPLFRMPIADMYAGMHGVSAICAALFGRVNSGRGQHIDIALYDCMISMHDFAAQSYLMSGGKELPVQTGHDL
PQSTVYGAFSANDGYLVIAAQMTDTWKSLARLIGGEDYAADTRLHDQAGRNANREAILARVTTWTKAHSVQACCAALDAA
GVPAAPVQTIDQVLSDPQTIARGMVVEQDHPVLGKIRLPNLPFRFSECDTSLSYPAPLLGQHNREIAASVGFSSVEIDAM
ERDGVLYSESQT

Sequences:

>Translated_412_residues
MTEPSPTQPAQALPLAGIRVIDYSHFLAGPHMSRCLSAMGAEVIKVERPVAGDAGRASPTIVQGQSGYFMQQNTGKQGLC
INLRDPRGLDMMHKLTDSADVFVENYRPGALNKLGLGYEELSGRNPKLVYCSVSAYGHTGPDSHRPGFGLIAEAKSGAMS
LIGVPGEPPPLFRMPIADMYAGMHGVSAICAALFGRVNSGRGQHIDIALYDCMISMHDFAAQSYLMSGGKELPVQTGHDL
PQSTVYGAFSANDGYLVIAAQMTDTWKSLARLIGGEDYAADTRLHDQAGRNANREAILARVTTWTKAHSVQACCAALDAA
GVPAAPVQTIDQVLSDPQTIARGMVVEQDHPVLGKIRLPNLPFRFSECDTSLSYPAPLLGQHNREIAASVGFSSVEIDAM
ERDGVLYSESQT
>Mature_411_residues
TEPSPTQPAQALPLAGIRVIDYSHFLAGPHMSRCLSAMGAEVIKVERPVAGDAGRASPTIVQGQSGYFMQQNTGKQGLCI
NLRDPRGLDMMHKLTDSADVFVENYRPGALNKLGLGYEELSGRNPKLVYCSVSAYGHTGPDSHRPGFGLIAEAKSGAMSL
IGVPGEPPPLFRMPIADMYAGMHGVSAICAALFGRVNSGRGQHIDIALYDCMISMHDFAAQSYLMSGGKELPVQTGHDLP
QSTVYGAFSANDGYLVIAAQMTDTWKSLARLIGGEDYAADTRLHDQAGRNANREAILARVTTWTKAHSVQACCAALDAAG
VPAAPVQTIDQVLSDPQTIARGMVVEQDHPVLGKIRLPNLPFRFSECDTSLSYPAPLLGQHNREIAASVGFSSVEIDAME
RDGVLYSESQT

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=379, Percent_Identity=32.9815303430079, Blast_Score=234, Evalue=1e-61,
Organism=Homo sapiens, GI300863124, Length=405, Percent_Identity=30.8641975308642, Blast_Score=219, Evalue=3e-57,
Organism=Homo sapiens, GI300863126, Length=378, Percent_Identity=30.4232804232804, Blast_Score=195, Evalue=5e-50,
Organism=Homo sapiens, GI13376042, Length=405, Percent_Identity=26.9135802469136, Blast_Score=169, Evalue=5e-42,
Organism=Homo sapiens, GI42794625, Length=404, Percent_Identity=26.2376237623762, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI266456254, Length=404, Percent_Identity=26.2376237623762, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458393, Length=216, Percent_Identity=30.5555555555556, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI266458397, Length=216, Percent_Identity=30.5555555555556, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI42822893, Length=150, Percent_Identity=30.6666666666667, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI266458395, Length=150, Percent_Identity=30.6666666666667, Blast_Score=75, Evalue=1e-13,
Organism=Escherichia coli, GI87082093, Length=374, Percent_Identity=32.620320855615, Blast_Score=207, Evalue=1e-54,
Organism=Escherichia coli, GI1788717, Length=411, Percent_Identity=27.9805352798054, Blast_Score=165, Evalue=6e-42,
Organism=Escherichia coli, GI1786222, Length=400, Percent_Identity=26, Blast_Score=121, Evalue=9e-29,
Organism=Caenorhabditis elegans, GI32564160, Length=217, Percent_Identity=27.6497695852535, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=352, Percent_Identity=23.8636363636364, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=33.4170854271357, Blast_Score=226, Evalue=3e-59,
Organism=Drosophila melanogaster, GI24585488, Length=310, Percent_Identity=28.0645161290323, Blast_Score=110, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44060; Mature: 43928

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEPSPTQPAQALPLAGIRVIDYSHFLAGPHMSRCLSAMGAEVIKVERPVAGDAGRASPT
CCCCCCCCCCCCCCCCCEEEEECHHHHCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCE
IVQGQSGYFMQQNTGKQGLCINLRDPRGLDMMHKLTDSADVFVENYRPGALNKLGLGYEE
EEECCCCEEEECCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEECCCCCCCHHHCCCHHH
LSGRNPKLVYCSVSAYGHTGPDSHRPGFGLIAEAKSGAMSLIGVPGEPPPLFRMPIADMY
HCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCEEECCHHHHH
AGMHGVSAICAALFGRVNSGRGQHIDIALYDCMISMHDFAAQSYLMSGGKELPVQTGHDL
HHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PQSTVYGAFSANDGYLVIAAQMTDTWKSLARLIGGEDYAADTRLHDQAGRNANREAILAR
CCHHEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCEEEEE
VTTWTKAHSVQACCAALDAAGVPAAPVQTIDQVLSDPQTIARGMVVEQDHPVLGKIRLPN
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHCEEEECCCCCEEEEECCC
LPFRFSECDTSLSYPAPLLGQHNREIAASVGFSSVEIDAMERDGVLYSESQT
CCCCHHCCCCCCCCCCHHHCCCCCHHHHHCCCCEEEEEEECCCCEEEECCCC
>Mature Secondary Structure 
TEPSPTQPAQALPLAGIRVIDYSHFLAGPHMSRCLSAMGAEVIKVERPVAGDAGRASPT
CCCCCCCCCCCCCCCCEEEEECHHHHCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCE
IVQGQSGYFMQQNTGKQGLCINLRDPRGLDMMHKLTDSADVFVENYRPGALNKLGLGYEE
EEECCCCEEEECCCCCCCEEEEECCCCCHHHHHHHCCCCCEEEECCCCCCCHHHCCCHHH
LSGRNPKLVYCSVSAYGHTGPDSHRPGFGLIAEAKSGAMSLIGVPGEPPPLFRMPIADMY
HCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCEEEEECCCCCCCEEECCHHHHH
AGMHGVSAICAALFGRVNSGRGQHIDIALYDCMISMHDFAAQSYLMSGGKELPVQTGHDL
HHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PQSTVYGAFSANDGYLVIAAQMTDTWKSLARLIGGEDYAADTRLHDQAGRNANREAILAR
CCHHEEEEEECCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCEEEEE
VTTWTKAHSVQACCAALDAAGVPAAPVQTIDQVLSDPQTIARGMVVEQDHPVLGKIRLPN
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHCEEEECCCCCEEEEECCC
LPFRFSECDTSLSYPAPLLGQHNREIAASVGFSSVEIDAMERDGVLYSESQT
CCCCHHCCCCCCCCCCHHHCCCCCHHHHHCCCCEEEEEEECCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]