| Definition | Polaromonas sp. JS666 chromosome, complete genome. |
|---|---|
| Accession | NC_007948 |
| Length | 5,200,264 |
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The map label for this gene is sbcB [H]
Identifier: 91788799
GI number: 91788799
Start: 3100204
End: 3101646
Strand: Reverse
Name: sbcB [H]
Synonym: Bpro_2939
Alternate gene names: 91788799
Gene position: 3101646-3100204 (Counterclockwise)
Preceding gene: 91788800
Following gene: 91788790
Centisome position: 59.64
GC content: 65.42
Gene sequence:
>1443_bases ATGGCGCCGCACACCTTCCTCTGGCACGACTACGAAACCTTTGGCCTCAATACCCGGCGCGACCGGCCTTCGCAATTTGC CGGCATCCGGACGGACGCCGAACTGAACGAGGTGGGTGAGCCGCTGATGCTCTACTGCCAGCCTGCCAACGACTACCTGC CCGACCCGGCCTCCTGCCTGATCACCGGGATCACGCCTCAGCTGTGCCTGGAGCGCGGGATCCCCGAGCACGCGTTCGCC GCCAAGATCGAGCAGCTGCTGGCCGAGCCCGGCACCATCGGCGTCGGTTACAACACCATCCGCTTTGACGACGAGGTGAC ACGCTACCTGTTCTGGCGCAACCTGATTGATCCCTACGCGCGCGAGTGGCAAAACGACTGCGGCCGCTGGGATCTGCTGG ACGTGGTGCGCATGGCCTATGCACTTCGCCCCGAGGGCATTGTCTGGCCCACCAAGGAAGACGGCAAACCCAGCTTCAAG CTGGAAGACCTGGCGCGCGCCAACGGCCTGCTGCACGAAGCGGCGCACGACGCCCTGTCGGACGTGCGCGCCACCATTGC CCTGGCCCGGCTGATTCGCAAAGCCCAGCCCAAGCTGTTCGATTTTTGCCTGGGCCTGCACAAAAAGGACCGGGTGGCCG CCGAACTCGGCCTGCCCGCCAGCCGGCAAAGCGCCACCCCGTTTTTGCATGTATCAGGCATGTTCCCGCCGGAGCGCGGC TGTCTGGCCGTGATGTGGCCGCTGGCGACGCACCCCACCAATAAAAACGAGTTGCTCGCCTGGGACCTCGCGCATGACCC GAGCGAGTTGCCGCTGCTGGATGTGGCCACGCTGCGCCAGCGCCTGTTCACCAGGTCGGCTGATCTGCCCGAAGGCGTGT TGCGCCTGCCGCTAAAGTCGGTGCACCTCAACAAGTCACCCATGGTGGTGCGCAAGCTGCAGACCTTGACCCCCGAGATG GCGGTGAAGTGGGGTGTGGACATGGACGCGGCACTGCGCAATGCCGAAAAAGCTGCCGGCCTGCCCGACATGAGCGCCAT CTGGCCCGAGGTGTTTCAACGCCCGAAAGAAGCCGCGCCCGATGTGGATGAAGACCTGTATGGCGGTTTTGTCGGCAATG CCGACCGCCGGCGGCTGAACCAGCTGCGCGCGCTGTCTCCCGCGGAGCTGGCCCACAGTCGCACCGGCTTTGACGATGAC CGCCTGCAAGAGCTGCTGTTCCGCTACCGTGCCCGCAACTTTGCCGAAACCCTGACGCCGGAAGAGGCCGAGCGCTGGGA AGCGCACCGGGCCGCGCGCCTGCTGGAAGGCGAGGGCGGCGCCCGCAACGTCGATGCGCTGTTTGCAGAGATCGACACGC TTTCAGAAACGACCGACGAGCGCGGCCAGGCGATTTTGGGTGCGCTGTATGACTACGCGGAGGCGATTGCGCCAGAGCTG TAG
Upstream 100 bases:
>100_bases TCGGCCTTTTTCATGCAGCTATCAAAGTAATAGCTGCCTGCGACCGGACTACCGGGGGCAGGGCTCAATTTCTCCCTATA AATATTCCAATAATCATTCC
Downstream 100 bases:
>100_bases CTCAGCTTCGTTTGTCGCAATTGATGGCCGGACTCGGGTTCAGCCCTCACCCCAGCCCTCTCCCAGGGGGAGAGGGTGTA ATTCGCACAAACCGCACAAA
Product: exonuclease I
Products: NA
Alternate protein names: Exonuclease I; DNA deoxyribophosphodiesterase; dRPase [H]
Number of amino acids: Translated: 480; Mature: 479
Protein sequence:
>480_residues MAPHTFLWHDYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCLITGITPQLCLERGIPEHAFA AKIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYAREWQNDCGRWDLLDVVRMAYALRPEGIVWPTKEDGKPSFK LEDLARANGLLHEAAHDALSDVRATIALARLIRKAQPKLFDFCLGLHKKDRVAAELGLPASRQSATPFLHVSGMFPPERG CLAVMWPLATHPTNKNELLAWDLAHDPSELPLLDVATLRQRLFTRSADLPEGVLRLPLKSVHLNKSPMVVRKLQTLTPEM AVKWGVDMDAALRNAEKAAGLPDMSAIWPEVFQRPKEAAPDVDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDD RLQELLFRYRARNFAETLTPEEAERWEAHRAARLLEGEGGARNVDALFAEIDTLSETTDERGQAILGALYDYAEAIAPEL
Sequences:
>Translated_480_residues MAPHTFLWHDYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCLITGITPQLCLERGIPEHAFA AKIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYAREWQNDCGRWDLLDVVRMAYALRPEGIVWPTKEDGKPSFK LEDLARANGLLHEAAHDALSDVRATIALARLIRKAQPKLFDFCLGLHKKDRVAAELGLPASRQSATPFLHVSGMFPPERG CLAVMWPLATHPTNKNELLAWDLAHDPSELPLLDVATLRQRLFTRSADLPEGVLRLPLKSVHLNKSPMVVRKLQTLTPEM AVKWGVDMDAALRNAEKAAGLPDMSAIWPEVFQRPKEAAPDVDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDD RLQELLFRYRARNFAETLTPEEAERWEAHRAARLLEGEGGARNVDALFAEIDTLSETTDERGQAILGALYDYAEAIAPEL >Mature_479_residues APHTFLWHDYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCLITGITPQLCLERGIPEHAFAA KIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYAREWQNDCGRWDLLDVVRMAYALRPEGIVWPTKEDGKPSFKL EDLARANGLLHEAAHDALSDVRATIALARLIRKAQPKLFDFCLGLHKKDRVAAELGLPASRQSATPFLHVSGMFPPERGC LAVMWPLATHPTNKNELLAWDLAHDPSELPLLDVATLRQRLFTRSADLPEGVLRLPLKSVHLNKSPMVVRKLQTLTPEMA VKWGVDMDAALRNAEKAAGLPDMSAIWPEVFQRPKEAAPDVDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDDR LQELLFRYRARNFAETLTPEEAERWEAHRAARLLEGEGGARNVDALFAEIDTLSETTDERGQAILGALYDYAEAIAPEL
Specific function: Also functions as a DNA deoxyribophosphodiesterase that release deoxyribose-phosphate moieties following the cleavage DNA at an apurinic/apyrimidinic (AP) site by either an AP endonuclease AP lyase [H]
COG id: COG2925
COG function: function code L; Exonuclease I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788321, Length=475, Percent_Identity=45.4736842105263, Blast_Score=388, Evalue=1e-109,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013620 - InterPro: IPR013520 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF08411 Exonuc_X-T_C [H]
EC number: =3.1.11.1 [H]
Molecular weight: Translated: 53931; Mature: 53800
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPHTFLWHDYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCL CCCCCEEECCHHHCCCCCCCCCCHHHCCCCCCCHHHHCCCCEEEEEECCCCCCCCHHHHE ITGITPQLCLERGIPEHAFAAKIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYA EECCCHHHHHHCCCCHHHHHHHHHHHHCCCCCEECCCCEEEECHHHHHHHHHHHHHHHHH REWQNDCGRWDLLDVVRMAYALRPEGIVWPTKEDGKPSFKLEDLARANGLLHEAAHDALS HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DVRATIALARLIRKAQPKLFDFCLGLHKKDRVAAELGLPASRQSATPFLHVSGMFPPERG HHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCC CLAVMWPLATHPTNKNELLAWDLAHDPSELPLLDVATLRQRLFTRSADLPEGVLRLPLKS CEEEEECCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCHHH VHLNKSPMVVRKLQTLTPEMAVKWGVDMDAALRNAEKAAGLPDMSAIWPEVFQRPKEAAP HCCCCCCHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHCCC DVDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDDRLQELLFRYRARNFAETLTP CCCHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC EEAERWEAHRAARLLEGEGGARNVDALFAEIDTLSETTDERGQAILGALYDYAEAIAPEL HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure APHTFLWHDYETFGLNTRRDRPSQFAGIRTDAELNEVGEPLMLYCQPANDYLPDPASCL CCCCEEECCHHHCCCCCCCCCCHHHCCCCCCCHHHHCCCCEEEEEECCCCCCCCHHHHE ITGITPQLCLERGIPEHAFAAKIEQLLAEPGTIGVGYNTIRFDDEVTRYLFWRNLIDPYA EECCCHHHHHHCCCCHHHHHHHHHHHHCCCCCEECCCCEEEECHHHHHHHHHHHHHHHHH REWQNDCGRWDLLDVVRMAYALRPEGIVWPTKEDGKPSFKLEDLARANGLLHEAAHDALS HHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH DVRATIALARLIRKAQPKLFDFCLGLHKKDRVAAELGLPASRQSATPFLHVSGMFPPERG HHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCC CLAVMWPLATHPTNKNELLAWDLAHDPSELPLLDVATLRQRLFTRSADLPEGVLRLPLKS CEEEEECCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHCCHHH VHLNKSPMVVRKLQTLTPEMAVKWGVDMDAALRNAEKAAGLPDMSAIWPEVFQRPKEAAP HCCCCCCHHHHHHHHHCHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHCCC DVDEDLYGGFVGNADRRRLNQLRALSPAELAHSRTGFDDDRLQELLFRYRARNFAETLTP CCCHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC EEAERWEAHRAARLLEGEGGARNVDALFAEIDTLSETTDERGQAILGALYDYAEAIAPEL HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]