Click here to switch to the map view.

The map label for this gene is ycaN [C]

Identifier: 91788790

GI number: 91788790

Start: 3092610

End: 3093539

Strand: Reverse

Name: ycaN [C]

Synonym: Bpro_2930

Alternate gene names: 91788790

Gene position: 3093539-3092610 (Counterclockwise)

Preceding gene: 91788799

Following gene: 91788789

Centisome position: 59.49

GC content: 65.91

Gene sequence:

>930_bases
ATGGAAACCTTGGCCAACCTCGAATCGTTTGTTCGCAGCGCCGAAGGCCGCAGCTTTTCCGTGGCGGCGCGGCGCCTGGA
GCTGACGCCTGCCGCCGTGAGCCGCAATGTGGCCATGCTGGAGCGAAACCTGGGCGTGCGGCTGTTTCAGCGCTCAACCC
GCAAACTCACGCTGACCGAAGCCGGTGAACGCTTTCTGGCTTCGATTGGCGGCAACCTCATCGCACTGCAGTCCGCCATC
GCGGCCGTCTCCAGCGACAGCGGCGACCCCGTCGGCTCGCTCAAGGTCAGCATGTCGCCTACCTTTGGCATCGAGTACAT
CGTGCCCTTGCTGCCGGCTTTTCTGGACCGTTATCCGCTGATTCGCCCTGACTGGCACTTTGAAAATCGCCCGGTCGACC
TGATCGCCGAGGGGTATGACGCAGCTATCGGCGGCGGCTTCGAGCTGTCGCCGGGCGTGGTGTCGCGCGCCTTGGCCCCG
ATCCACTTGGTCGCCGTGGCGTCGCCCGCCTATATGGCAGGCCAGCAGGCCCCAGCCGACCCTGCGGGCCTGGCCGGGTT
CAAAGGTATCGCTCTGCGTTCCAGCGGAACGAGCCGGGTTCGCCAGTGGGTCATGCGCGATGCGGCCGGCACCGAAATCC
CGGCAAGCCTTACCGAGTCCGTGGTCGTGAACGACCCGACCGCCATGCGCGCCGCAGCGCTGCTGGGCCTGGGCGTGACG
CTGCTTGCCGTGCCCGACGTGCTGCCGTGGCTTGAACGCGGCGAACTCGTCAGGCTGCTGCCGCGCTGGTATGTGGATGC
CGGCGCGATCTCGATCTATTACGCCACGCGCAGCCTGATGCCTGCCAAAACCCGCGTGTTCATTGATTTTGTGGTCGAGG
CTTTCGAGCGCGATCAGCTGGGCCGGCGCTTTGCCGGCAGCCTCGGTTAG

Upstream 100 bases:

>100_bases
ACTCCTTGGTTGTTGATGGGTGAATGATGGGTTTTTGATTGCCTTTTGATAAGACAGTAATTGATTGAATTATTTTCAAG
CATTGCTTTAAGATGGCGAA

Downstream 100 bases:

>100_bases
GCGGCCTGCAAATACGGCGGACTTGACCCACAATCCTTGTCTTCGCATCTCTCTGAAAGCCACCTCATGACCCAATCCCT
CAAAGTCGCCGTGATGGGCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
METLANLESFVRSAEGRSFSVAARRLELTPAAVSRNVAMLERNLGVRLFQRSTRKLTLTEAGERFLASIGGNLIALQSAI
AAVSSDSGDPVGSLKVSMSPTFGIEYIVPLLPAFLDRYPLIRPDWHFENRPVDLIAEGYDAAIGGGFELSPGVVSRALAP
IHLVAVASPAYMAGQQAPADPAGLAGFKGIALRSSGTSRVRQWVMRDAAGTEIPASLTESVVVNDPTAMRAAALLGLGVT
LLAVPDVLPWLERGELVRLLPRWYVDAGAISIYYATRSLMPAKTRVFIDFVVEAFERDQLGRRFAGSLG

Sequences:

>Translated_309_residues
METLANLESFVRSAEGRSFSVAARRLELTPAAVSRNVAMLERNLGVRLFQRSTRKLTLTEAGERFLASIGGNLIALQSAI
AAVSSDSGDPVGSLKVSMSPTFGIEYIVPLLPAFLDRYPLIRPDWHFENRPVDLIAEGYDAAIGGGFELSPGVVSRALAP
IHLVAVASPAYMAGQQAPADPAGLAGFKGIALRSSGTSRVRQWVMRDAAGTEIPASLTESVVVNDPTAMRAAALLGLGVT
LLAVPDVLPWLERGELVRLLPRWYVDAGAISIYYATRSLMPAKTRVFIDFVVEAFERDQLGRRFAGSLG
>Mature_309_residues
METLANLESFVRSAEGRSFSVAARRLELTPAAVSRNVAMLERNLGVRLFQRSTRKLTLTEAGERFLASIGGNLIALQSAI
AAVSSDSGDPVGSLKVSMSPTFGIEYIVPLLPAFLDRYPLIRPDWHFENRPVDLIAEGYDAAIGGGFELSPGVVSRALAP
IHLVAVASPAYMAGQQAPADPAGLAGFKGIALRSSGTSRVRQWVMRDAAGTEIPASLTESVVVNDPTAMRAAALLGLGVT
LLAVPDVLPWLERGELVRLLPRWYVDAGAISIYYATRSLMPAKTRVFIDFVVEAFERDQLGRRFAGSLG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=25.5172413793103, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI1787589, Length=290, Percent_Identity=27.9310344827586, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=29.1095890410959, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=27.1186440677966, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI145693193, Length=302, Percent_Identity=26.158940397351, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=28.4745762711864, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789440, Length=302, Percent_Identity=25.8278145695364, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1789173, Length=238, Percent_Identity=31.0924369747899, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788706, Length=225, Percent_Identity=28, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786448, Length=111, Percent_Identity=40.5405405405405, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI157672245, Length=116, Percent_Identity=36.2068965517241, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693105, Length=201, Percent_Identity=25.8706467661692, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1786713, Length=268, Percent_Identity=26.4925373134328, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1788748, Length=153, Percent_Identity=31.3725490196078, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1790208, Length=251, Percent_Identity=26.6932270916335, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33139; Mature: 33139

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METLANLESFVRSAEGRSFSVAARRLELTPAAVSRNVAMLERNLGVRLFQRSTRKLTLTE
CCHHHHHHHHHHHCCCCEEEHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHCCCCEEEHHH
AGERFLASIGGNLIALQSAIAAVSSDSGDPVGSLKVSMSPTFGIEYIVPLLPAFLDRYPL
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC
IRPDWHFENRPVDLIAEGYDAAIGGGFELSPGVVSRALAPIHLVAVASPAYMAGQQAPAD
CCCCCCCCCCCCEEEECCCCHHCCCCCCCCHHHHHHHHHHEEEEEECCCHHHCCCCCCCC
PAGLAGFKGIALRSSGTSRVRQWVMRDAAGTEIPASLTESVVVNDPTAMRAAALLGLGVT
CCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCHHHHCCEEECCCHHHHHHHHHHHHHH
LLAVPDVLPWLERGELVRLLPRWYVDAGAISIYYATRSLMPAKTRVFIDFVVEAFERDQL
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHH
GRRFAGSLG
HHHHHCCCC
>Mature Secondary Structure
METLANLESFVRSAEGRSFSVAARRLELTPAAVSRNVAMLERNLGVRLFQRSTRKLTLTE
CCHHHHHHHHHHHCCCCEEEHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHCCCCEEEHHH
AGERFLASIGGNLIALQSAIAAVSSDSGDPVGSLKVSMSPTFGIEYIVPLLPAFLDRYPL
HHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC
IRPDWHFENRPVDLIAEGYDAAIGGGFELSPGVVSRALAPIHLVAVASPAYMAGQQAPAD
CCCCCCCCCCCCEEEECCCCHHCCCCCCCCHHHHHHHHHHEEEEEECCCHHHCCCCCCCC
PAGLAGFKGIALRSSGTSRVRQWVMRDAAGTEIPASLTESVVVNDPTAMRAAALLGLGVT
CCCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCHHHHCCEEECCCHHHHHHHHHHHHHH
LLAVPDVLPWLERGELVRLLPRWYVDAGAISIYYATRSLMPAKTRVFIDFVVEAFERDQL
HHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHHHHHHHHHHHHHH
GRRFAGSLG
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]