Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is ybaB [C]
Identifier: 91788140
GI number: 91788140
Start: 2362232
End: 2362564
Strand: Direct
Name: ybaB [C]
Synonym: Bpro_2269
Alternate gene names: 91788140
Gene position: 2362232-2362564 (Clockwise)
Preceding gene: 91788139
Following gene: 91788141
Centisome position: 45.43
GC content: 58.26
Gene sequence:
>333_bases ATGTTCAACAAAGGACAACTCGCAGGCCTCATGAAACAGGCGCAGGCGATGCAGGACAACCTCAAAAAAGCGCAGGAAGA ACTGGCTTTTGTCGAAGTGACGGCGGACGCCGGCGCCGGCCTTGTCAAGGTCACGATGACCTGCAAGCACGACGTCAAGC GCATTGAGATCGACCCCAGCCTGCTGGCCGATGACAAGGATATGCTCGAAGACCTGGTGGCGGCCGCTTTCAACGCGGCC GTACGCAAGGCCGAGGAAGTCAGTCAGGAAAAAATGGGCAAGTTGACAGCCGGCATGCCGGGACTGCCCGGGGGCATGAA GTTTCCATTCTGA
Upstream 100 bases:
>100_bases GATTGGGGTGCCAGGATTGTTCCGGGCAGCATCAGGCCCCTTGCCCCCAAGCCGATATGATAGCCACCCGTTGTAAAGCC GGAATTTAAAGGAAAGAACC
Downstream 100 bases:
>100_bases TCGCCACCGTTCTGGCTGAGGCTGCCATTGCAGGCATGTAGCCGGGTATTCCTGCAAACCCAACACCCACGGCGGACGCG CATTTTCAATGGCTGACTCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 110; Mature: 110
Protein sequence:
>110_residues MFNKGQLAGLMKQAQAMQDNLKKAQEELAFVEVTADAGAGLVKVTMTCKHDVKRIEIDPSLLADDKDMLEDLVAAAFNAA VRKAEEVSQEKMGKLTAGMPGLPGGMKFPF
Sequences:
>Translated_110_residues MFNKGQLAGLMKQAQAMQDNLKKAQEELAFVEVTADAGAGLVKVTMTCKHDVKRIEIDPSLLADDKDMLEDLVAAAFNAA VRKAEEVSQEKMGKLTAGMPGLPGGMKFPF >Mature_110_residues MFNKGQLAGLMKQAQAMQDNLKKAQEELAFVEVTADAGAGLVKVTMTCKHDVKRIEIDPSLLADDKDMLEDLVAAAFNAA VRKAEEVSQEKMGKLTAGMPGLPGGMKFPF
Specific function: Unknown
COG id: COG0718
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0133 family [H]
Homologues:
Organism=Escherichia coli, GI1786677, Length=110, Percent_Identity=60.9090909090909, Blast_Score=134, Evalue=1e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004401 [H]
Pfam domain/function: PF02575 DUF149 [H]
EC number: NA
Molecular weight: Translated: 11841; Mature: 11841
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 7.3 %Met (Translated Protein) 8.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 7.3 %Met (Mature Protein) 8.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFNKGQLAGLMKQAQAMQDNLKKAQEELAFVEVTADAGAGLVKVTMTCKHDVKRIEIDPS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCCCCEEEECCHH LLADDKDMLEDLVAAAFNAAVRKAEEVSQEKMGKLTAGMPGLPGGMKFPF HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MFNKGQLAGLMKQAQAMQDNLKKAQEELAFVEVTADAGAGLVKVTMTCKHDVKRIEIDPS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEEEECCCCCEEEECCHH LLADDKDMLEDLVAAAFNAAVRKAEEVSQEKMGKLTAGMPGLPGGMKFPF HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA