Definition | Polaromonas sp. JS666 chromosome, complete genome. |
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Accession | NC_007948 |
Length | 5,200,264 |
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The map label for this gene is ybhO [H]
Identifier: 91786770
GI number: 91786770
Start: 891664
End: 892908
Strand: Direct
Name: ybhO [H]
Synonym: Bpro_0868
Alternate gene names: 91786770
Gene position: 891664-892908 (Clockwise)
Preceding gene: 91786769
Following gene: 91786771
Centisome position: 17.15
GC content: 65.3
Gene sequence:
>1245_bases ATGTCCCCACCCCACAAGTCCGAAGCCGTGCAATTGCTCGAGGGCGCCCAGGCCTTGTTTCCGGCCCTCATCGAGGCCTT TGATGCCGCGGTCAACTGGATACAGCTGGAAACCTATATTTTTGATGTTCACGGAGTCGCAGCGGAGGTGGCCGAGGCGC TGGCGCGGGCAGCGGGGCGCGGCGTGACGGTGCAGGTGCTGGTCGATGGCATCGGCACCGGTCCTTTGCCGGCCGAGTGG CAAAAAAAGTTCAGCGAAACGGGCGTGCAGTGGTGCGTCTACTCACCGCTGGGTACCGGTTTCGGCGGGTTGGGCGGCTT GGGCATGCTGCTGCCAGACCGCTGGCGCAGGCTGCACCGCAAGCTGTGCGTGGTAGACCAGCGCGTGGTTTTTTGTGGCG GCATCAATGTGCTGGATGACTTCTACGATCCGAACCATGGGGAGCTCCAGTCCCCGCGCCTGGATTTCGCCGTGGCTGTG ACCGGGCCGCTGGCCGCCGATGCTGCCGACGCCGCCGCCCTGCTGTGGTGGCGCGTTCAGGCCGGCTACAGCGCACGGCA AAGGCATTTGAGCGCGGCGTGGGAAAAGTTCAAGGCGGCCGGTTACGGCGGCCGCACCGGCAACGGGATGCTCACCGGCC GGCCACATTTCAGGCTTGTCGGTGCGCCGGGCGCGCGGGCCGCGCTGATCTTGCGCGACAACCTGCGCAACCGCAGCAGC ATCGAGCGTGCTTACCGCAAGGCGATTGGCCAGGCGCGCCAGGAAATCATCATTGCCAACGCTTATTTCCTGCCCGGCGG CAAACTGCGCCGCGCCCTCATCAATGCGGCCAGACGCGGTGTGAGCGTGACCCTGCTGCTGCAGGGACGCTACGAATACT TCATGCAATACCATGCGGCGCGGCCGGTGTACGGCGCCCTGTTGGCGGCAGGGGTGGAAATCCATGAATACGAGGCCAGT TTTCTGCATGCCAAGGTGGCCGTCGTGGACGGACGTTGGGCCACGGTGGGCTCGTCCAACCTGGATCCGCTCAGTTTGCT GCTGGCCCGGGAGGCCAATGTGGTGGTGGAGAACAAGGCGTTTGCCGAAGCGTTGAGAGACCGCCTGTGCGTGGCCATGA CCAGCTACGGCCGGCGCATCGACCCCGCCGTCTACAGCCAGCGGCCGCTGGGCCAGCGTCTGCGGGGCTGGATGGCCTAT GCCCTGATGCGACTGGCCTTGCTGATAACCGGACAGCGTTACTGA
Upstream 100 bases:
>100_bases GCAGTCGGTTTAAATGGGCTGACAAGTCCGTCCTCATGACACCTGACACCTGACACCTGAAACCCACCAGCCCTGCCCCT CACACGAAATTCCCCGGCCC
Downstream 100 bases:
>100_bases GCCCATCGCCCCGGCACTGGCGGGGGAGCCGTGGCAGCCCCTATTTTGCTATCAAATATATAGCTTCATGCGCTTGTGTC CTGTGGGCTGGGAGCTTAAA
Product: phospholipase D/transphosphatidylase
Products: NA
Alternate protein names: CL synthase [H]
Number of amino acids: Translated: 414; Mature: 413
Protein sequence:
>414_residues MSPPHKSEAVQLLEGAQALFPALIEAFDAAVNWIQLETYIFDVHGVAAEVAEALARAAGRGVTVQVLVDGIGTGPLPAEW QKKFSETGVQWCVYSPLGTGFGGLGGLGMLLPDRWRRLHRKLCVVDQRVVFCGGINVLDDFYDPNHGELQSPRLDFAVAV TGPLAADAADAAALLWWRVQAGYSARQRHLSAAWEKFKAAGYGGRTGNGMLTGRPHFRLVGAPGARAALILRDNLRNRSS IERAYRKAIGQARQEIIIANAYFLPGGKLRRALINAARRGVSVTLLLQGRYEYFMQYHAARPVYGALLAAGVEIHEYEAS FLHAKVAVVDGRWATVGSSNLDPLSLLLAREANVVVENKAFAEALRDRLCVAMTSYGRRIDPAVYSQRPLGQRLRGWMAY ALMRLALLITGQRY
Sequences:
>Translated_414_residues MSPPHKSEAVQLLEGAQALFPALIEAFDAAVNWIQLETYIFDVHGVAAEVAEALARAAGRGVTVQVLVDGIGTGPLPAEW QKKFSETGVQWCVYSPLGTGFGGLGGLGMLLPDRWRRLHRKLCVVDQRVVFCGGINVLDDFYDPNHGELQSPRLDFAVAV TGPLAADAADAAALLWWRVQAGYSARQRHLSAAWEKFKAAGYGGRTGNGMLTGRPHFRLVGAPGARAALILRDNLRNRSS IERAYRKAIGQARQEIIIANAYFLPGGKLRRALINAARRGVSVTLLLQGRYEYFMQYHAARPVYGALLAAGVEIHEYEAS FLHAKVAVVDGRWATVGSSNLDPLSLLLAREANVVVENKAFAEALRDRLCVAMTSYGRRIDPAVYSQRPLGQRLRGWMAY ALMRLALLITGQRY >Mature_413_residues SPPHKSEAVQLLEGAQALFPALIEAFDAAVNWIQLETYIFDVHGVAAEVAEALARAAGRGVTVQVLVDGIGTGPLPAEWQ KKFSETGVQWCVYSPLGTGFGGLGGLGMLLPDRWRRLHRKLCVVDQRVVFCGGINVLDDFYDPNHGELQSPRLDFAVAVT GPLAADAADAAALLWWRVQAGYSARQRHLSAAWEKFKAAGYGGRTGNGMLTGRPHFRLVGAPGARAALILRDNLRNRSSI ERAYRKAIGQARQEIIIANAYFLPGGKLRRALINAARRGVSVTLLLQGRYEYFMQYHAARPVYGALLAAGVEIHEYEASF LHAKVAVVDGRWATVGSSNLDPLSLLLAREANVVVENKAFAEALRDRLCVAMTSYGRRIDPAVYSQRPLGQRLRGWMAYA LMRLALLITGQRY
Specific function: Catalyzes, in vitro, the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol [H]
COG id: COG1502
COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PLD phosphodiesterase domains [H]
Homologues:
Organism=Escherichia coli, GI1787007, Length=407, Percent_Identity=34.8894348894349, Blast_Score=210, Evalue=2e-55, Organism=Escherichia coli, GI1787502, Length=399, Percent_Identity=26.8170426065163, Blast_Score=122, Evalue=6e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001736 [H]
Pfam domain/function: PF00614 PLDc [H]
EC number: 2.7.8.-
Molecular weight: Translated: 45322; Mature: 45191
Theoretical pI: Translated: 9.97; Mature: 9.97
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPPHKSEAVQLLEGAQALFPALIEAFDAAVNWIQLETYIFDVHGVAAEVAEALARAAGR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEHHHHHHHHHHHHHHHCCC GVTVQVLVDGIGTGPLPAEWQKKFSETGVQWCVYSPLGTGFGGLGGLGMLLPDRWRRLHR CCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHCCCHHHHHHHH KLCVVDQRVVFCGGINVLDDFYDPNHGELQSPRLDFAVAVTGPLAADAADAAALLWWRVQ HHHHHCCEEEEECCCHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH AGYSARQRHLSAAWEKFKAAGYGGRTGNGMLTGRPHFRLVGAPGARAALILRDNLRNRSS CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCCCCEEEEEECCCCCHHH IERAYRKAIGQARQEIIIANAYFLPGGKLRRALINAARRGVSVTLLLQGRYEYFMQYHAA HHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC RPVYGALLAAGVEIHEYEASFLHAKVAVVDGRWATVGSSNLDPLSLLLAREANVVVENKA CHHHHHHHHCCCHHHHHHHHHHEEEEEEECCCEEECCCCCCCHHHHHHHCCCCEEEECHH FAEALRDRLCVAMTSYGRRIDPAVYSQRPLGQRLRGWMAYALMRLALLITGQRY HHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure SPPHKSEAVQLLEGAQALFPALIEAFDAAVNWIQLETYIFDVHGVAAEVAEALARAAGR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEHHHHHHHHHHHHHHHCCC GVTVQVLVDGIGTGPLPAEWQKKFSETGVQWCVYSPLGTGFGGLGGLGMLLPDRWRRLHR CCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHCCCHHHHHHHH KLCVVDQRVVFCGGINVLDDFYDPNHGELQSPRLDFAVAVTGPLAADAADAAALLWWRVQ HHHHHCCEEEEECCCHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH AGYSARQRHLSAAWEKFKAAGYGGRTGNGMLTGRPHFRLVGAPGARAALILRDNLRNRSS CCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCCCCEEEEEECCCCCHHH IERAYRKAIGQARQEIIIANAYFLPGGKLRRALINAARRGVSVTLLLQGRYEYFMQYHAA HHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC RPVYGALLAAGVEIHEYEASFLHAKVAVVDGRWATVGSSNLDPLSLLLAREANVVVENKA CHHHHHHHHCCCHHHHHHHHHHEEEEEEECCCEEECCCCCCCHHHHHHHCCCCEEEECHH FAEALRDRLCVAMTSYGRRIDPAVYSQRPLGQRLRGWMAYALMRLALLITGQRY HHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]