Definition | Francisella tularensis subsp. holarctica LVS chromosome, complete genome. |
---|---|
Accession | NC_007880 |
Length | 1,895,994 |
Click here to switch to the map view.
The map label for this gene is 89256349
Identifier: 89256349
GI number: 89256349
Start: 969610
End: 971019
Strand: Direct
Name: 89256349
Synonym: FTL_1005
Alternate gene names: NA
Gene position: 969610-971019 (Clockwise)
Preceding gene: 89256348
Following gene: 89256350
Centisome position: 51.14
GC content: 31.06
Gene sequence:
>1410_bases ATGAAAAATGTTAGTAGATTTTTATTTGTAAGTATATTTGCAATATTACTAAACTCTTGTAGTACAGCAAAGAAAGATGT CACAAAACTCGAATTTGTTTCTAGTAGTTATCCTTGGATATTTAGCCCTGTGCGAAAAGAGCTAGCTCAAGGTGATGTAA CTGAGGCAATCAAAAAAAATAATAGTATCGGCAATGTTAGGCAGCTTAAAAGTCTCAATCAACTAGAATCTGGAAGATTA TCGCAACTAAATAGTGATTCTAAAGCCTCAATAGAAATCTATAGTAAAGCTATAGAGTCGCTACCTAAAAATCAGCAACA GTCTCTAGATCAAGCAAAAAAAATACTTTTAAATAGAAATACATATAATTACTATGATATTAAGTCTACATATGATATTC CAGATTACGCAATTACTTTCTTGTATACTTATCAAGCATTAAATTACCTTGAAACAAATAATATTAAAGAGGCTATACAA TCACTTAACAACCTTGATAATGCTAAAATATGGCGTGATGAGCAAGAAATACTTGCTGAAGGAATGAAGCAGCTGGGACA AAAAGATCTAGATAGAAATGAGATAACTAGCGACAATCTAGGCTTAGAAAATTTTAAAGCCTTGACGCAAATGCTTGAGT TTTCAAAAAGAATACCAAATGCGTATGGTAATCCGATGAGCTATTATCTTAAAGCTTTACTTGATTCGGCAGTTTCAAAA GATTATCAAAAGTCTTTGACAGACATTGAAAGTGCACAGCAATATACGGTCGGCAACAAATATCTTGATCAAACAGCTAA TGAGTTTAAATCAGCAATAATAAGTCAGACCTCACCATTTGCAATGAGTATGGGTAGAGTGGTAGTATTGTATGAGCAGG GACTTGTATATACGCGTAGTTCTGCTCAAGCAAGTTTAGATCTTGGTAATATAGGTGTTAGAAAGATTGATTTGCCAGTA TATAACACTGACTATAATTTATTTGAACCAAAGAGAGTCATAATATCGGCAGATGATACTAATTTAATTGATACATATAC TGAGACTTTATTAGATACAACTTTGTTTGCGATAAAATCTTTAATAGAGTCATACTCAAAAGTAATAACTCAAAATGTTG TGATCGAAGCATTTAAATACGACTATGAAAATAACTTCGCATTAGGAGGTTTATTAGGTAGTACTTTGAAGTTTGATTTA TCAAAAACTGATCCTAAGAGAGCAGATTTAAGAAGTTGGTTATTATTACCTAATAGTGTTGATTTATTTGAGCAGCAACT TGATAGTGGCAATTATATGATTCAAGTTAACAATATTCGTCAGAAAATTACTATTCAGCAAGGTAAAACTACTCTTTTAT GGATTGTTGATATTGGTAAGTTTAAGAAAGTTTATTATTTTATTTTTTAA
Upstream 100 bases:
>100_bases TGGTTAATTAAAAATGCACATAAATATGGCTTTAAGTTGAGTTTCCCATGCAATAATGACTATGGTTTTATATATGAGCC ATGGCACTGGTGTTATCACA
Downstream 100 bases:
>100_bases ATTTAACTTTTTAATTACAGTACTTTATTCTAGGTTATGTGTACAAAAGTAAATTTTCAACCTAACTAAAAAAAGTATGA GCTAACTTAATTATCCTAAA
Product: hypothetical protein
Products: NA
Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; Adenine DNA Methylase
Number of amino acids: Translated: 469; Mature: 469
Protein sequence:
>469_residues MKNVSRFLFVSIFAILLNSCSTAKKDVTKLEFVSSSYPWIFSPVRKELAQGDVTEAIKKNNSIGNVRQLKSLNQLESGRL SQLNSDSKASIEIYSKAIESLPKNQQQSLDQAKKILLNRNTYNYYDIKSTYDIPDYAITFLYTYQALNYLETNNIKEAIQ SLNNLDNAKIWRDEQEILAEGMKQLGQKDLDRNEITSDNLGLENFKALTQMLEFSKRIPNAYGNPMSYYLKALLDSAVSK DYQKSLTDIESAQQYTVGNKYLDQTANEFKSAIISQTSPFAMSMGRVVVLYEQGLVYTRSSAQASLDLGNIGVRKIDLPV YNTDYNLFEPKRVIISADDTNLIDTYTETLLDTTLFAIKSLIESYSKVITQNVVIEAFKYDYENNFALGGLLGSTLKFDL SKTDPKRADLRSWLLLPNSVDLFEQQLDSGNYMIQVNNIRQKITIQQGKTTLLWIVDIGKFKKVYYFIF
Sequences:
>Translated_469_residues MKNVSRFLFVSIFAILLNSCSTAKKDVTKLEFVSSSYPWIFSPVRKELAQGDVTEAIKKNNSIGNVRQLKSLNQLESGRL SQLNSDSKASIEIYSKAIESLPKNQQQSLDQAKKILLNRNTYNYYDIKSTYDIPDYAITFLYTYQALNYLETNNIKEAIQ SLNNLDNAKIWRDEQEILAEGMKQLGQKDLDRNEITSDNLGLENFKALTQMLEFSKRIPNAYGNPMSYYLKALLDSAVSK DYQKSLTDIESAQQYTVGNKYLDQTANEFKSAIISQTSPFAMSMGRVVVLYEQGLVYTRSSAQASLDLGNIGVRKIDLPV YNTDYNLFEPKRVIISADDTNLIDTYTETLLDTTLFAIKSLIESYSKVITQNVVIEAFKYDYENNFALGGLLGSTLKFDL SKTDPKRADLRSWLLLPNSVDLFEQQLDSGNYMIQVNNIRQKITIQQGKTTLLWIVDIGKFKKVYYFIF >Mature_469_residues MKNVSRFLFVSIFAILLNSCSTAKKDVTKLEFVSSSYPWIFSPVRKELAQGDVTEAIKKNNSIGNVRQLKSLNQLESGRL SQLNSDSKASIEIYSKAIESLPKNQQQSLDQAKKILLNRNTYNYYDIKSTYDIPDYAITFLYTYQALNYLETNNIKEAIQ SLNNLDNAKIWRDEQEILAEGMKQLGQKDLDRNEITSDNLGLENFKALTQMLEFSKRIPNAYGNPMSYYLKALLDSAVSK DYQKSLTDIESAQQYTVGNKYLDQTANEFKSAIISQTSPFAMSMGRVVVLYEQGLVYTRSSAQASLDLGNIGVRKIDLPV YNTDYNLFEPKRVIISADDTNLIDTYTETLLDTTLFAIKSLIESYSKVITQNVVIEAFKYDYENNFALGGLLGSTLKFDL SKTDPKRADLRSWLLLPNSVDLFEQQLDSGNYMIQVNNIRQKITIQQGKTTLLWIVDIGKFKKVYYFIF
Specific function: Unknown
COG id: COG3014
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53484; Mature: 53484
Theoretical pI: Translated: 6.90; Mature: 6.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNVSRFLFVSIFAILLNSCSTAKKDVTKLEFVSSSYPWIFSPVRKELAQGDVTEAIKKN CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCHHHHHHHCC NSIGNVRQLKSLNQLESGRLSQLNSDSKASIEIYSKAIESLPKNQQQSLDQAKKILLNRN CCCCHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC TYNYYDIKSTYDIPDYAITFLYTYQALNYLETNNIKEAIQSLNNLDNAKIWRDEQEILAE CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHCCCHHHHHHH GMKQLGQKDLDRNEITSDNLGLENFKALTQMLEFSKRIPNAYGNPMSYYLKALLDSAVSK HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH DYQKSLTDIESAQQYTVGNKYLDQTANEFKSAIISQTSPFAMSMGRVVVLYEQGLVYTRS HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEECCEEEEEC SAQASLDLGNIGVRKIDLPVYNTDYNLFEPKRVIISADDTNLIDTYTETLLDTTLFAIKS CCCCCCEECCCCEEEEECEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH LIESYSKVITQNVVIEAFKYDYENNFALGGLLGSTLKFDLSKTDPKRADLRSWLLLPNSV HHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCHHEECCCCCCCCHHHHHHHEECCCCH DLFEQQLDSGNYMIQVNNIRQKITIQQGKTTLLWIVDIGKFKKVYYFIF HHHHHHHCCCCEEEEECCCCEEEEEECCCEEEEEEEECCCCCEEEEEEC >Mature Secondary Structure MKNVSRFLFVSIFAILLNSCSTAKKDVTKLEFVSSSYPWIFSPVRKELAQGDVTEAIKKN CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHHHHHCCHHHHHHHCC NSIGNVRQLKSLNQLESGRLSQLNSDSKASIEIYSKAIESLPKNQQQSLDQAKKILLNRN CCCCHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC TYNYYDIKSTYDIPDYAITFLYTYQALNYLETNNIKEAIQSLNNLDNAKIWRDEQEILAE CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHCCCHHHHHHH GMKQLGQKDLDRNEITSDNLGLENFKALTQMLEFSKRIPNAYGNPMSYYLKALLDSAVSK HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH DYQKSLTDIESAQQYTVGNKYLDQTANEFKSAIISQTSPFAMSMGRVVVLYEQGLVYTRS HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCEEEEEECCEEEEEC SAQASLDLGNIGVRKIDLPVYNTDYNLFEPKRVIISADDTNLIDTYTETLLDTTLFAIKS CCCCCCEECCCCEEEEECEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH LIESYSKVITQNVVIEAFKYDYENNFALGGLLGSTLKFDLSKTDPKRADLRSWLLLPNSV HHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHCCHHEECCCCCCCCHHHHHHHEECCCCH DLFEQQLDSGNYMIQVNNIRQKITIQQGKTTLLWIVDIGKFKKVYYFIF HHHHHHHCCCCEEEEECCCCEEEEEECCCEEEEEEEECCCCCEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA