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The map label for this gene is yodJ [H]

Identifier: 89256348

GI number: 89256348

Start: 969150

End: 969623

Strand: Direct

Name: yodJ [H]

Synonym: FTL_1004

Alternate gene names: 89256348

Gene position: 969150-969623 (Clockwise)

Preceding gene: 89256347

Following gene: 89256349

Centisome position: 51.12

GC content: 33.33

Gene sequence:

>474_bases
ATGGTAAGAAAAATAATTTTTCCAGAAGCAAAAGAGCATGAGCTTATTTCGGCAGGTAAAGATTTTTTTGCTAGAGATTT
ACTTTTAGAGAAAAATACTTATAAAGCTTGGTTAGAGCTAAAACAAGCAGCGATTGATGATGGTATTAGTCTATTTATAG
TTTCAGGTTTTAGAAGCTATGAATATCAGCAGAAAATTATAGATAGAAAGCTTGCTAATGGACAAACTTTAGAAGAGATT
ATCAGGGTAAATGCTTTGCCAGGAGAGAGTGAGCATCATACGGGTAGGGCTATTGATCTAACAACTGGGGATGAAAAAGA
GGTTTTGACAGAGGATTTTGAAAAAACTTATGCTTTTGAGTGGTTAATTAAAAATGCACATAAATATGGCTTTAAGTTGA
GTTTCCCATGCAATAATGACTATGGTTTTATATATGAGCCATGGCACTGGTGTTATCACAATGAAAAATGTTAG

Upstream 100 bases:

>100_bases
TCAATAAACTAAACTTACGTAATGCTGAAGATAGTATTAGCGATATTTCTGCACATCATAGTTATCTTAGTAATTTGCTA
AAACTAGAAGAAGATGCAAA

Downstream 100 bases:

>100_bases
TAGATTTTTATTTGTAAGTATATTTGCAATATTACTAAACTCTTGTAGTACAGCAAAGAAAGATGTCACAAAACTCGAAT
TTGTTTCTAGTAGTTATCCT

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MVRKIIFPEAKEHELISAGKDFFARDLLLEKNTYKAWLELKQAAIDDGISLFIVSGFRSYEYQQKIIDRKLANGQTLEEI
IRVNALPGESEHHTGRAIDLTTGDEKEVLTEDFEKTYAFEWLIKNAHKYGFKLSFPCNNDYGFIYEPWHWCYHNEKC

Sequences:

>Translated_157_residues
MVRKIIFPEAKEHELISAGKDFFARDLLLEKNTYKAWLELKQAAIDDGISLFIVSGFRSYEYQQKIIDRKLANGQTLEEI
IRVNALPGESEHHTGRAIDLTTGDEKEVLTEDFEKTYAFEWLIKNAHKYGFKLSFPCNNDYGFIYEPWHWCYHNEKC
>Mature_157_residues
MVRKIIFPEAKEHELISAGKDFFARDLLLEKNTYKAWLELKQAAIDDGISLFIVSGFRSYEYQQKIIDRKLANGQTLEEI
IRVNALPGESEHHTGRAIDLTTGDEKEVLTEDFEKTYAFEWLIKNAHKYGFKLSFPCNNDYGFIYEPWHWCYHNEKC

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 18443; Mature: 18443

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRKIIFPEAKEHELISAGKDFFARDLLLEKNTYKAWLELKQAAIDDGISLFIVSGFRSY
CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCHHH
EYQQKIIDRKLANGQTLEEIIRVNALPGESEHHTGRAIDLTTGDEKEVLTEDFEKTYAFE
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
WLIKNAHKYGFKLSFPCNNDYGFIYEPWHWCYHNEKC
HHHHHHHHCCEEEECCCCCCCCEEECCEEEECCCCCC
>Mature Secondary Structure
MVRKIIFPEAKEHELISAGKDFFARDLLLEKNTYKAWLELKQAAIDDGISLFIVSGFRSY
CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCHHH
EYQQKIIDRKLANGQTLEEIIRVNALPGESEHHTGRAIDLTTGDEKEVLTEDFEKTYAFE
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
WLIKNAHKYGFKLSFPCNNDYGFIYEPWHWCYHNEKC
HHHHHHHHCCEEEECCCCCCCCEEECCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]