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The map label for this gene is ycjC [C]

Identifier: 89054537

GI number: 89054537

Start: 2050371

End: 2050988

Strand: Direct

Name: ycjC [C]

Synonym: Jann_2046

Alternate gene names: 89054537

Gene position: 2050371-2050988 (Clockwise)

Preceding gene: 89054531

Following gene: 89054538

Centisome position: 47.48

GC content: 61.81

Gene sequence:

>618_bases
ATGGCACGACCCAAGTCGAACAACGATCCCGCCCTTGGTGCGCTGATCCGCAAGCGGCGCAAGCAGTTGGATCTGACGTT
GCAGGCGCTGTGCGATGATGCCGGATTGTCCGTCGGCTACCTGTCCCAGGTCGAACGTGGGCAGGCGACCCCATCGCTTG
GCACGCTGGCGCAGATCGCCCAGGGCCTCTCGGTCGAGCTGGAGTATTTCATTGCCACCCCCAAGCCCGCCGACAGCCTG
TCGCGCGGTGGGGCGCGTCCCCAGTTTTCCATCGATGGGTCGTCTATCCTGTACGAATCCGTCGGCGCGGATTTCCCGGG
GGCCGAATTGTCGTGCTACATTTTGCATGTGCCGCCCGGCTATGCGTCCGAAGTGGTGCACCATGAGGGGGAGGAAATCA
TCTTCCTGCTGAGCGGTGAAATCACCCAGACCTTGGGCGGGCAAAGCTTCATTCTGCAACAGGGGGACAGCCTGCATTAT
TCCGGCTCAACCCCCCATTCCTGGTCCAACGAGACCCAGGCCACCACGCGTATCCTGTGGACCGGCACGCTGTCGGTTCT
GCAACGCAAGGGCGCTGTGAAACTGCCTGAAATGAACCCGGCCAACACCAATGGCTGA

Upstream 100 bases:

>100_bases
CCGGCCACGCCCCGACGGTGCAACATTTCGCTTGGTTTTGGCAAATAGTTTTGCTTAGATCAAAAAAATTATGACGATTG
ATGGCGCGAAAAGGGGAAAA

Downstream 100 bases:

>100_bases
AAGCGCAGGCCGAAACGTGGATATCTGTTTTCGGGCAAACTTGCGCGCAATACCTGACCCAACACGGAGGTTTTTCCAAT
GAAACTGTTCAAACCGGCCC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; MerR Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Conserved Barrel Domain Protein; Cupin 2 Domain-Containing Protein; Cro/CI Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator MerR Family; Transcriptional Regulator XRE Family With Cupin Sensor; Cupin 2 Conserved Barrel Domain-Containing Protein; Transcriptional Regulatory Protein; Regulatory Protein; Helix-Turn-Helix Transcriptional Regulator PuuR; HTH-Type Transcriptional Regulator; Cupin Domain Protein; HTH-Type Transcriptional Regulator YdcN; Helix-Turn-Helix/Cupin Domain Protein; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Transcriptional Regulator XRE Family Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcriptional Regulator Xre Familiy; Transcriptional Regulator Cro/CI Family Protein; Transcriptional Regulator Cro/CI Family; Helix-Turn-Helix Protein; Transcriptional Regulator Xre Family; Transcription Regulator; XRE Family-Like Protein

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MARPKSNNDPALGALIRKRRKQLDLTLQALCDDAGLSVGYLSQVERGQATPSLGTLAQIAQGLSVELEYFIATPKPADSL
SRGGARPQFSIDGSSILYESVGADFPGAELSCYILHVPPGYASEVVHHEGEEIIFLLSGEITQTLGGQSFILQQGDSLHY
SGSTPHSWSNETQATTRILWTGTLSVLQRKGAVKLPEMNPANTNG

Sequences:

>Translated_205_residues
MARPKSNNDPALGALIRKRRKQLDLTLQALCDDAGLSVGYLSQVERGQATPSLGTLAQIAQGLSVELEYFIATPKPADSL
SRGGARPQFSIDGSSILYESVGADFPGAELSCYILHVPPGYASEVVHHEGEEIIFLLSGEITQTLGGQSFILQQGDSLHY
SGSTPHSWSNETQATTRILWTGTLSVLQRKGAVKLPEMNPANTNG
>Mature_204_residues
ARPKSNNDPALGALIRKRRKQLDLTLQALCDDAGLSVGYLSQVERGQATPSLGTLAQIAQGLSVELEYFIATPKPADSLS
RGGARPQFSIDGSSILYESVGADFPGAELSCYILHVPPGYASEVVHHEGEEIIFLLSGEITQTLGGQSFILQQGDSLHYS
GSTPHSWSNETQATTRILWTGTLSVLQRKGAVKLPEMNPANTNG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787557, Length=182, Percent_Identity=26.3736263736264, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21936; Mature: 21805

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARPKSNNDPALGALIRKRRKQLDLTLQALCDDAGLSVGYLSQVERGQATPSLGTLAQIA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
QGLSVELEYFIATPKPADSLSRGGARPQFSIDGSSILYESVGADFPGAELSCYILHVPPG
CCCCEEEEEEEECCCCHHHHHCCCCCCEEEECCCHHHHHHHCCCCCCCCEEEEEEECCCC
YASEVVHHEGEEIIFLLSGEITQTLGGQSFILQQGDSLHYSGSTPHSWSNETQATTRILW
HHHHHHHCCCCEEEEEECCCHHHHCCCCEEEEECCCEEEECCCCCCCCCCCCCCEEEEEE
TGTLSVLQRKGAVKLPEMNPANTNG
EHHHHHHHHCCCEECCCCCCCCCCC
>Mature Secondary Structure 
ARPKSNNDPALGALIRKRRKQLDLTLQALCDDAGLSVGYLSQVERGQATPSLGTLAQIA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHH
QGLSVELEYFIATPKPADSLSRGGARPQFSIDGSSILYESVGADFPGAELSCYILHVPPG
CCCCEEEEEEEECCCCHHHHHCCCCCCEEEECCCHHHHHHHCCCCCCCCEEEEEEECCCC
YASEVVHHEGEEIIFLLSGEITQTLGGQSFILQQGDSLHYSGSTPHSWSNETQATTRILW
HHHHHHHCCCCEEEEEECCCHHHHCCCCEEEEECCCEEEECCCCCCCCCCCCCCEEEEEE
TGTLSVLQRKGAVKLPEMNPANTNG
EHHHHHHHHCCCEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA