Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
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Accession | NC_007802 |
Length | 4,317,977 |
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The map label for this gene is 89054531
Identifier: 89054531
GI number: 89054531
Start: 2045522
End: 2046022
Strand: Direct
Name: 89054531
Synonym: Jann_2040
Alternate gene names: NA
Gene position: 2045522-2046022 (Clockwise)
Preceding gene: 89054530
Following gene: 89054537
Centisome position: 47.37
GC content: 61.48
Gene sequence:
>501_bases ATGGCGCTTACCCCAGATCAGATGCCTGACCGCGCCGAAGTGGTCTTCACCTGCAATGGCAAGGCGGTGGGCAAGATGCG GAACGAGTTGGACGTGGCCATGGTAAAACCGTTCGAGGAGCGGTTTGCGCTGGCCACGGACGAGGGCGCGTTCCATGGCG GGGATGCGTCCGCGCCGCCCCCGTTGGCGCTGTTCATCGCGGGATTGACCGGCTGCGTCATGACGCAGATCCGGGCCTTT GCGAAACGCCTGAAGGTCACAGTGACCGACTTGGATGTGGAATGCCGGGTCGTGTGGGACTGGGCCAAAGCAGGGCCAGT CTACGAGACCGGACCAAAGAGCTTTGAGATCGACATCATCCTGCACAGCCCCGACCCGATCGAAGCGCAACAGGCGCTGA TCGAAGCGGCGAAGAAGGGGTGTTTTCTGGAGCAGACGCTGGGTCAGGCCAATACGATCCGTCACCGTCTGAAAGTCGGC GATACGTTCATTGACGCGTGA
Upstream 100 bases:
>100_bases GGGCTGGAGATCGGCAAGCGGCTCAGCGACGGCGATATGATGGATTTGACGATTGAGAAGATCGGAACCCTGACCAACAC AATCAAGAAAGGGGCCTGAC
Downstream 100 bases:
>100_bases TCGTTCGCGGTGGGTTTGGGGTGCGTTGACGATGGCGTGCACTCGGACATCAGACGACCAAGTGGGGTCTGATCCATCGC ATCCGGGCAATTCATCCGGC
Product: OsmC-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 166; Mature: 165
Protein sequence:
>166_residues MALTPDQMPDRAEVVFTCNGKAVGKMRNELDVAMVKPFEERFALATDEGAFHGGDASAPPPLALFIAGLTGCVMTQIRAF AKRLKVTVTDLDVECRVVWDWAKAGPVYETGPKSFEIDIILHSPDPIEAQQALIEAAKKGCFLEQTLGQANTIRHRLKVG DTFIDA
Sequences:
>Translated_166_residues MALTPDQMPDRAEVVFTCNGKAVGKMRNELDVAMVKPFEERFALATDEGAFHGGDASAPPPLALFIAGLTGCVMTQIRAF AKRLKVTVTDLDVECRVVWDWAKAGPVYETGPKSFEIDIILHSPDPIEAQQALIEAAKKGCFLEQTLGQANTIRHRLKVG DTFIDA >Mature_165_residues ALTPDQMPDRAEVVFTCNGKAVGKMRNELDVAMVKPFEERFALATDEGAFHGGDASAPPPLALFIAGLTGCVMTQIRAFA KRLKVTVTDLDVECRVVWDWAKAGPVYETGPKSFEIDIILHSPDPIEAQQALIEAAKKGCFLEQTLGQANTIRHRLKVGD TFIDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18102; Mature: 17971
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALTPDQMPDRAEVVFTCNGKAVGKMRNELDVAMVKPFEERFALATDEGAFHGGDASAPP CCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCEEECCHHHHHEEECCCCCCCCCCCCCCC PLALFIAGLTGCVMTQIRAFAKRLKVTVTDLDVECRVVWDWAKAGPVYETGPKSFEIDII HHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEE LHSPDPIEAQQALIEAAKKGCFLEQTLGQANTIRHRLKVGDTFIDA EECCCCCHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure ALTPDQMPDRAEVVFTCNGKAVGKMRNELDVAMVKPFEERFALATDEGAFHGGDASAPP CCCCCCCCCCEEEEEEECCCCHHHHHHHCCCEEECCHHHHHEEECCCCCCCCCCCCCCC PLALFIAGLTGCVMTQIRAFAKRLKVTVTDLDVECRVVWDWAKAGPVYETGPKSFEIDII HHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEE LHSPDPIEAQQALIEAAKKGCFLEQTLGQANTIRHRLKVGDTFIDA EECCCCCHHHHHHHHHHHCCCCHHHHHCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA