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The map label for this gene is ddpA [H]

Identifier: 89054538

GI number: 89054538

Start: 2051067

End: 2052656

Strand: Direct

Name: ddpA [H]

Synonym: Jann_2047

Alternate gene names: 89054538

Gene position: 2051067-2052656 (Clockwise)

Preceding gene: 89054537

Following gene: 89054539

Centisome position: 47.5

GC content: 60.94

Gene sequence:

>1590_bases
ATGAAACTGTTCAAACCGGCCCTGCTGTCGGCGATGCTGGCGCTGCCGCTGGCAGCCCCCGCGGCCCTTGCGGAAACGCC
GCCCGAGATCCTGGTGGTCGCGCAGAATATCGACGACATCGTCGCGATTGACCCGGCTCAGGCCTATGAGTTCACCTCTG
GCGAGTTGGTGACGAACACCTATGACCGTCTTGTGCAATACGATGCCGAAGACACGACCGTGCTGGCCCCCGGTCTTGCC
ACGGAGTGGGAGATTGACGCCGAGGCCAAGACCATCGTCTTCACCATGCGCGAGGGTGTGACGTTCCATTCCGGCAATGC
GTTCACGGCGGATGACGTGGTTGGCTCCTTCGCCCGCGTGGTGCAGTTGAACCTGACGCCTGCGTTCATCCTGACGCAGC
TTGGCTGGACGCCCGAAAACGTCGAGGAGATGGTGACAGCGGACGGCAACACTGTGACCGTGCGCTATGATGGCGACTTT
TCCCCGGCCTTCGTGATGAACGTGCTGGCGTCGCGGCCTGCCTCCATCGTGGATATGGAAACGGTCATGGCCAACGCGGT
TGACGGCGATATGGGCAATGCGTGGCTCAACGCCAACACGGCGGGCACGGGGCCGTTTTCGCTCAACACCTTCCGCGCGG
CAGAGCTGATCCGCATGGATGCCAACCCTGACTATTTCAACGGTGCCCCCGCCATCGAGGGTGTAATCATCCGCCATGTC
GCGGAATCGGCGACACAGCAATTGTTGCTGGAAGCGGGTGATGTTGATATTGCGCGCAACTTGACGCCGGACCAGATCGC
GTCACTTGGCGGGGACGAGTTGCAGGTGGAGACGTTCCCACAAGCAGCCGTCCACTTCCTGTCGTTCAACCAGGCGGTCG
AAAGCCTAACGCCCCCCGCCGTATGGGAAGCCGCGCGCTATCTGGTGGATTACGAGGGGATGACCAACTCGATCATCGCA
GGCCAGATGGAAATCCATCAGGCGTTCTGGCCAGAAGGGTTCCCCGGCGCGTTGACCGACACGCCCTACACCTATGATCC
GGAGCGCGCCGCGCAGATCCTGGAAGATGCAGGGATTGAGCTGCCGATCACCGTCACGCTCGATGTGATCAACGCAGCAC
CCTTCACCGATATGGCGCAATCGTTGCAGGCGTCTTTCGCCGAAGCGGGCATCGAGTTCGAAATCCTGCCCGGCACCGGA
TCACAGGTGATCACCCGCTACCGCGACCGCAGCCATGAGGCGATGTTGCTCTACTGGGGCCCGGACTTCATGGATCCCCA
TTCCAACGCCAAAGCCTTCGCCTACAATTCCGACAATCGGCAGGAAACCTACACCGCCACGACGACATGGCGGAACTCCT
GGGCGGTGCCGGAAGAGATGAACGCGATGACGACGGCGGCCCTGACGGAATCCGATCCGGCTGTGCGTGAAGAGATGTAT
CTGGAGCTTCAGCGGCAGGTGCAGGCGAACTCGCCCATCGTGATCATGTTCCAGGCCTCCTATCAGGTGGGTATGGCCGA
GAATGTGTCAGGCTACGTGAATGGTGCGACGTCTGACTTCGTGTTCTACCGGCTTGTCGACAAAAGCTGA

Upstream 100 bases:

>100_bases
CCCGGCCAACACCAATGGCTGAAAGCGCAGGCCGAAACGTGGATATCTGTTTTCGGGCAAACTTGCGCGCAATACCTGAC
CCAACACGGAGGTTTTTCCA

Downstream 100 bases:

>100_bases
TCGCACGTGATCTTGTCGCCGGCCCCACAGCGGGCCGGCGATGTTCGGTTTCCAGAAGGGCCTGCCATGGACATCTACAA
AACCCGCCTCGCGCGCTTGC

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MKLFKPALLSAMLALPLAAPAALAETPPEILVVAQNIDDIVAIDPAQAYEFTSGELVTNTYDRLVQYDAEDTTVLAPGLA
TEWEIDAEAKTIVFTMREGVTFHSGNAFTADDVVGSFARVVQLNLTPAFILTQLGWTPENVEEMVTADGNTVTVRYDGDF
SPAFVMNVLASRPASIVDMETVMANAVDGDMGNAWLNANTAGTGPFSLNTFRAAELIRMDANPDYFNGAPAIEGVIIRHV
AESATQQLLLEAGDVDIARNLTPDQIASLGGDELQVETFPQAAVHFLSFNQAVESLTPPAVWEAARYLVDYEGMTNSIIA
GQMEIHQAFWPEGFPGALTDTPYTYDPERAAQILEDAGIELPITVTLDVINAAPFTDMAQSLQASFAEAGIEFEILPGTG
SQVITRYRDRSHEAMLLYWGPDFMDPHSNAKAFAYNSDNRQETYTATTTWRNSWAVPEEMNAMTTAALTESDPAVREEMY
LELQRQVQANSPIVIMFQASYQVGMAENVSGYVNGATSDFVFYRLVDKS

Sequences:

>Translated_529_residues
MKLFKPALLSAMLALPLAAPAALAETPPEILVVAQNIDDIVAIDPAQAYEFTSGELVTNTYDRLVQYDAEDTTVLAPGLA
TEWEIDAEAKTIVFTMREGVTFHSGNAFTADDVVGSFARVVQLNLTPAFILTQLGWTPENVEEMVTADGNTVTVRYDGDF
SPAFVMNVLASRPASIVDMETVMANAVDGDMGNAWLNANTAGTGPFSLNTFRAAELIRMDANPDYFNGAPAIEGVIIRHV
AESATQQLLLEAGDVDIARNLTPDQIASLGGDELQVETFPQAAVHFLSFNQAVESLTPPAVWEAARYLVDYEGMTNSIIA
GQMEIHQAFWPEGFPGALTDTPYTYDPERAAQILEDAGIELPITVTLDVINAAPFTDMAQSLQASFAEAGIEFEILPGTG
SQVITRYRDRSHEAMLLYWGPDFMDPHSNAKAFAYNSDNRQETYTATTTWRNSWAVPEEMNAMTTAALTESDPAVREEMY
LELQRQVQANSPIVIMFQASYQVGMAENVSGYVNGATSDFVFYRLVDKS
>Mature_529_residues
MKLFKPALLSAMLALPLAAPAALAETPPEILVVAQNIDDIVAIDPAQAYEFTSGELVTNTYDRLVQYDAEDTTVLAPGLA
TEWEIDAEAKTIVFTMREGVTFHSGNAFTADDVVGSFARVVQLNLTPAFILTQLGWTPENVEEMVTADGNTVTVRYDGDF
SPAFVMNVLASRPASIVDMETVMANAVDGDMGNAWLNANTAGTGPFSLNTFRAAELIRMDANPDYFNGAPAIEGVIIRHV
AESATQQLLLEAGDVDIARNLTPDQIASLGGDELQVETFPQAAVHFLSFNQAVESLTPPAVWEAARYLVDYEGMTNSIIA
GQMEIHQAFWPEGFPGALTDTPYTYDPERAAQILEDAGIELPITVTLDVINAAPFTDMAQSLQASFAEAGIEFEILPGTG
SQVITRYRDRSHEAMLLYWGPDFMDPHSNAKAFAYNSDNRQETYTATTTWRNSWAVPEEMNAMTTAALTESDPAVREEMY
LELQRQVQANSPIVIMFQASYQVGMAENVSGYVNGATSDFVFYRLVDKS

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=516, Percent_Identity=27.3255813953488, Blast_Score=165, Evalue=7e-42,
Organism=Escherichia coli, GI1789966, Length=492, Percent_Identity=26.0162601626016, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787551, Length=464, Percent_Identity=26.5086206896552, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1789887, Length=428, Percent_Identity=22.6635514018692, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1787052, Length=517, Percent_Identity=22.0502901353965, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 57691; Mature: 57691

Theoretical pI: Translated: 3.86; Mature: 3.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLFKPALLSAMLALPLAAPAALAETPPEILVVAQNIDDIVAIDPAQAYEFTSGELVTNT
CCCCHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCEEEECCHHHEECCCCCEEHHH
YDRLVQYDAEDTTVLAPGLATEWEIDAEAKTIVFTMREGVTFHSGNAFTADDVVGSFARV
HHHHHEECCCCCEEECCCCCCCEEECCCCEEEEEEEECCEEEECCCCEEHHHHHHHHHHE
VQLNLTPAFILTQLGWTPENVEEMVTADGNTVTVRYDGDFSPAFVMNVLASRPASIVDME
EEECCCHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEHH
TVMANAVDGDMGNAWLNANTAGTGPFSLNTFRAAELIRMDANPDYFNGAPAIEGVIIRHV
HHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHEEEEEECCCCCCCCCCCHHHHHHHHHH
AESATQQLLLEAGDVDIARNLTPDQIASLGGDELQVETFPQAAVHFLSFNQAVESLTPPA
HHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCHH
VWEAARYLVDYEGMTNSIIAGQMEIHQAFWPEGFPGALTDTPYTYDPERAAQILEDAGIE
HHHHHHHHEECCCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCE
LPITVTLDVINAAPFTDMAQSLQASFAEAGIEFEILPGTGSQVITRYRDRSHEAMLLYWG
EEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCEEEEEEC
PDFMDPHSNAKAFAYNSDNRQETYTATTTWRNSWAVPEEMNAMTTAALTESDPAVREEMY
CCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHEEECCCCHHHHHHHH
LELQRQVQANSPIVIMFQASYQVGMAENVSGYVNGATSDFVFYRLVDKS
HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECCCCCCEEEEEEECCC
>Mature Secondary Structure
MKLFKPALLSAMLALPLAAPAALAETPPEILVVAQNIDDIVAIDPAQAYEFTSGELVTNT
CCCCHHHHHHHHHHHHHCCCHHHHCCCCCEEEEEECCCCEEEECCHHHEECCCCCEEHHH
YDRLVQYDAEDTTVLAPGLATEWEIDAEAKTIVFTMREGVTFHSGNAFTADDVVGSFARV
HHHHHEECCCCCEEECCCCCCCEEECCCCEEEEEEEECCEEEECCCCEEHHHHHHHHHHE
VQLNLTPAFILTQLGWTPENVEEMVTADGNTVTVRYDGDFSPAFVMNVLASRPASIVDME
EEECCCHHHHHHHCCCCHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEHH
TVMANAVDGDMGNAWLNANTAGTGPFSLNTFRAAELIRMDANPDYFNGAPAIEGVIIRHV
HHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHEEEEEECCCCCCCCCCCHHHHHHHHHH
AESATQQLLLEAGDVDIARNLTPDQIASLGGDELQVETFPQAAVHFLSFNQAVESLTPPA
HHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHCCCHH
VWEAARYLVDYEGMTNSIIAGQMEIHQAFWPEGFPGALTDTPYTYDPERAAQILEDAGIE
HHHHHHHHEECCCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCE
LPITVTLDVINAAPFTDMAQSLQASFAEAGIEFEILPGTGSQVITRYRDRSHEAMLLYWG
EEEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCEEEEEEC
PDFMDPHSNAKAFAYNSDNRQETYTATTTWRNSWAVPEEMNAMTTAALTESDPAVREEMY
CCCCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCCHHHHHHHHEEECCCCHHHHHHHH
LELQRQVQANSPIVIMFQASYQVGMAENVSGYVNGATSDFVFYRLVDKS
HHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEECCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]