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The map label for this gene is yafC [H]

Identifier: 89053252

GI number: 89053252

Start: 724115

End: 725035

Strand: Direct

Name: yafC [H]

Synonym: Jann_0761

Alternate gene names: 89053252

Gene position: 724115-725035 (Clockwise)

Preceding gene: 89053238

Following gene: 89053253

Centisome position: 16.77

GC content: 63.19

Gene sequence:

>921_bases
ATGTGTGTGGGATATTGCACATGGAACGGAGTGTGGGGACGCATGGACAACTGGGATGAAGTCAGAACCGCCTTTCAGGT
GGCGAAGGTCGGCACGGTCTCGGGCGCGGCAGAGGCGTTGGGGGTCCACCATGCCACGGTGATCCGCCACATCGACGCGC
TGGAGGCGCGGTTGGGCGCGAAGCTGTTCCAGCGCCATGCGCGGGGTTACACGGCGACGGAGGCGGGCCAGGACCTTCTG
TCAGTGGCGGGCCAGACCGATGATCAATTCACCCAGCTGGCGGGCCGGATCAAGGGCCGCGGTGATGAGGTTACGGGCGA
GTTGATCGTGACCTCCCTCGGTGCGCTGTCGCCGCTTCTGGTGCCGACGATTGCCCTGTTTCAGGAACGACACCCCGATC
TGCGCGTGCGCCTGGTCAGCGATGCGCGGCTGTTCCGGCTGGAATATGGAGAGGCTCATGTGGCGATCCGCGCGGGCAAA
CTGCCCGACCAGCCCGACAATATCGTGCAGCCGTTCTTCACCCAGACCCTGCGGCTGGTGGCGAGCCAGAGCTACATCGA
CCGCTTCGGCCAGTTGACCGGCGAGAATGTGGAGGCGCATCGCTTTGTTGGCTCGACCGAGGAAACGCCCCGCGCGCCCT
ACTTCAAGTGGCTCAATGAGACTGTGCCCTCATCGACGATCTATTTCCGGGCCTCGTCCATGGTTGCGGTGAAAGAGGCG
GTTCTGGCGGGCATCGGGATTGGCTTCGTGGCGTCCTGGGATCGCGACCGCACCGACGATCTGGTGGAGGTTTTGCCACC
CCTGGAGGATTGGACCGCGAAGATCTGGCTGGTGACCCATATGGACCTGCACCGGACAGCGAAGGTGCAGACCTTTGTGA
AGCATCTCAAGGATCAGGTGAAAACGTGGCCCGTCGAGTGA

Upstream 100 bases:

>100_bases
CGCAAATGCACGACATTGCGATCCGGTCGAAAGTTTAATCCGCCAGGCCGCGCATACGTTGCGTTCTGCGGACTGTGCAC
GCATTGTCTGCCTTGGGGCT

Downstream 100 bases:

>100_bases
TGCGGTGCGCCTGGTTGAGAGGGTGCGCCTTGGGGGGCCAGCCCCCCAGACCCCCCGAAGTTGTAAAGCCCAGATGAAAA
GGGAGCGGCGCGCTTTGGGG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MCVGYCTWNGVWGRMDNWDEVRTAFQVAKVGTVSGAAEALGVHHATVIRHIDALEARLGAKLFQRHARGYTATEAGQDLL
SVAGQTDDQFTQLAGRIKGRGDEVTGELIVTSLGALSPLLVPTIALFQERHPDLRVRLVSDARLFRLEYGEAHVAIRAGK
LPDQPDNIVQPFFTQTLRLVASQSYIDRFGQLTGENVEAHRFVGSTEETPRAPYFKWLNETVPSSTIYFRASSMVAVKEA
VLAGIGIGFVASWDRDRTDDLVEVLPPLEDWTAKIWLVTHMDLHRTAKVQTFVKHLKDQVKTWPVE

Sequences:

>Translated_306_residues
MCVGYCTWNGVWGRMDNWDEVRTAFQVAKVGTVSGAAEALGVHHATVIRHIDALEARLGAKLFQRHARGYTATEAGQDLL
SVAGQTDDQFTQLAGRIKGRGDEVTGELIVTSLGALSPLLVPTIALFQERHPDLRVRLVSDARLFRLEYGEAHVAIRAGK
LPDQPDNIVQPFFTQTLRLVASQSYIDRFGQLTGENVEAHRFVGSTEETPRAPYFKWLNETVPSSTIYFRASSMVAVKEA
VLAGIGIGFVASWDRDRTDDLVEVLPPLEDWTAKIWLVTHMDLHRTAKVQTFVKHLKDQVKTWPVE
>Mature_306_residues
MCVGYCTWNGVWGRMDNWDEVRTAFQVAKVGTVSGAAEALGVHHATVIRHIDALEARLGAKLFQRHARGYTATEAGQDLL
SVAGQTDDQFTQLAGRIKGRGDEVTGELIVTSLGALSPLLVPTIALFQERHPDLRVRLVSDARLFRLEYGEAHVAIRAGK
LPDQPDNIVQPFFTQTLRLVASQSYIDRFGQLTGENVEAHRFVGSTEETPRAPYFKWLNETVPSSTIYFRASSMVAVKEA
VLAGIGIGFVASWDRDRTDDLVEVLPPLEDWTAKIWLVTHMDLHRTAKVQTFVKHLKDQVKTWPVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=310, Percent_Identity=26.1290322580645, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=25.6666666666667, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34105; Mature: 34105

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCVGYCTWNGVWGRMDNWDEVRTAFQVAKVGTVSGAAEALGVHHATVIRHIDALEARLGA
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLFQRHARGYTATEAGQDLLSVAGQTDDQFTQLAGRIKGRGDEVTGELIVTSLGALSPLL
HHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
VPTIALFQERHPDLRVRLVSDARLFRLEYGEAHVAIRAGKLPDQPDNIVQPFFTQTLRLV
HHHHHHHHHCCCCEEEEEECCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
ASQSYIDRFGQLTGENVEAHRFVGSTEETPRAPYFKWLNETVPSSTIYFRASSMVAVKEA
HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHH
VLAGIGIGFVASWDRDRTDDLVEVLPPLEDWTAKIWLVTHMDLHRTAKVQTFVKHLKDQV
HHHHCCHHHEECCCCCCHHHHHHHCCCCHHHCEEEEEEEECCHHHHHHHHHHHHHHHHHH
KTWPVE
HCCCCC
>Mature Secondary Structure
MCVGYCTWNGVWGRMDNWDEVRTAFQVAKVGTVSGAAEALGVHHATVIRHIDALEARLGA
CEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
KLFQRHARGYTATEAGQDLLSVAGQTDDQFTQLAGRIKGRGDEVTGELIVTSLGALSPLL
HHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
VPTIALFQERHPDLRVRLVSDARLFRLEYGEAHVAIRAGKLPDQPDNIVQPFFTQTLRLV
HHHHHHHHHCCCCEEEEEECCCEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
ASQSYIDRFGQLTGENVEAHRFVGSTEETPRAPYFKWLNETVPSSTIYFRASSMVAVKEA
HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCHHHHHHH
VLAGIGIGFVASWDRDRTDDLVEVLPPLEDWTAKIWLVTHMDLHRTAKVQTFVKHLKDQV
HHHHCCHHHEECCCCCCHHHHHHHCCCCHHHCEEEEEEEECCHHHHHHHHHHHHHHHHHH
KTWPVE
HCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]