Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is nagP [H]
Identifier: 87200425
GI number: 87200425
Start: 2583756
End: 2585444
Strand: Reverse
Name: nagP [H]
Synonym: Saro_2412
Alternate gene names: 87200425
Gene position: 2585444-2583756 (Counterclockwise)
Preceding gene: 87200426
Following gene: 87200424
Centisome position: 72.59
GC content: 69.63
Gene sequence:
>1689_bases ATGAGGAACCTTCTCGGCCTGCTCCAGCCGATCGGTCGCGCGCTGATGCTGCCGATCGCGGTGCTCCCCGTCGCGGGGCT TCTGCTGCGCCTCGGCCAGCCCGACCTGCTCGATCTTCCGCTGCTGGCCGCGTCCGGCGATGCGCTCTTCTCCAGCCTCG GACTGCTTTTCGCCATCGGCGTTGCCGCGGGCATTGCGCGCGACGGCAATGGTGCGGCGTGCCTCGCGGGGGTGGTCTGT TATCTCGTCACGATGAACGGCGGCAAGGCGCTCCTGCCGGTCCCGACGGACGTCACGCTCGGCCTTGCCGATACGCTTGC CCAGACCGTCGCAAGGGCGTGGAAGGCCAAGGCCTTTGCCCGGCTTGACGTACCCATCGGGATCGTCTCGGGTCTGCTCG GCGGCGCGCTCTACAACCGCTTCTCGACCATCGCCGTTCCTGCCTATCTCGCCTTCTTCGGCGGAAGGCGTTTCGTGCCC ATCGTCGCGGGTGGCGCGGGGGTCGTGCTTGCCGGGGTCGTGGGCCTTGGCTTCCCGGCACTCGATGCCGCGCTCGATCA CGGTAGCCGGGGTCTCGTTGCCGCAGGTCCGGTCGGGCTCTTCGCCTTCGGGGTTCTGAACCGGCTGCTCCTCGTCACCG GGCTCCACCACATCCTCAACAACGTCGCCTGGTTCGTCCTGGGCGATTTCGGGGGGACGACCGGCGACCTGCGCCGCTTC TTTGCCGGAGACCCGCATGCGGGCGCCTTCATGGCCGGGTTCTTCCCGATCATGATGTTCGGCCTGCCCGCCGCCTGCCT CGCCATGTACCGGGCCGCGTTGCCCGATCAGCGCAAGGCGACCGGCGGCATGCTTCTCAGCCTCGCGCTCACCTCGTTCC TGACCGGCGTGACCGAGCCGATCGAGTTCAGCTTCATGTTCCTCGCACCGATGCTCTACGCGGTCCACGCGGTGCTGACG GGCGCGGCGATGGTTCTGATGGACGTGCTCGGCGTGCGCATGGGCTTCGGCTTTTCCGCCGGCCTTTTCGACTATGTGCT GAACTTCGGCCGAGCCACCCGGCCGCTTCTCCTGCTGCCCGTCGGCCTTGCCTATTTCGCGATCTACTACGCGGTCTTCA GCTATGCGATCCGCCGTTTCGACCTCGCGACGCCAGGCCGCCAGCCGCTCGCGCCCTCCGGCCAGCAGGAAACCGGCACC GACGGCGAGTTGGGCCACGCCTATGTCGAAGCCCTTGGCGGCGCCGCCAACATCGCCACCTTGGGCGCCTGCACCACGCG CCTGCGCCTGGTCGTCCGCGATCCCGCGGCGGTCGACGATGCCGCGCTCAAGGCGCTCGGCGCGGTCGCGGTGCTGCGCC CTGCCGCCGATGCCGTGCAGGTCATAATCGGCCCCATGGCAGACCGCATCTGCGCCGAGATGGCCGACGTCGTGAAGCAC GCACCCGCCGCCCCCGCCGCCACGCCTGTCCGCTCCGAAGCGTTAGCCGTCAGCCTGCGCCCGGAAATCCTTGCCGCGCT CGGCGGAGCCGATGCCGTCGTCCAGGCCTCGCGCGCGGCCGGACGCATCCGCGTGACGTTTCGCCGTGACGCGGATCTTG CGGCAATGGCCCCGGTCCCCGGCCTGCGCTGCGTCGCCCGCATCGACGCGCGGACCTGGCACCTCATCGGCCAGGACCTC GCGGTCTGA
Upstream 100 bases:
>100_bases TGTCCATCTCGGACTGCAAGACTCTCGCCCTCGAGGCGCTTCAGCTTGAATCCGCTGCCGAAATCCGTGCCCTGTCGCGG GCATTCGTGGAGACACTGCC
Downstream 100 bases:
>100_bases GCCGCGCGGCGATGACGCCGACCGGCCTGCATCGCCGCGAGGTCCTGTCGCTGCTGGGCACGACAGCCTGTACCATCGCC GCCTCTGCCCACGCTTCGGC
Product: PTS system, N-acetylglucosamine-specific IIBC component
Products: NA
Alternate protein names: EIICB-Nag; N-acetylglucosamine permease IIC component; PTS system N-acetylglucosamine-specific EIIC component; N-acetylglucosamine-specific phosphotransferase enzyme IIB component; PTS system N-acetylglucosamine-specific EIIB component [H]
Number of amino acids: Translated: 562; Mature: 562
Protein sequence:
>562_residues MRNLLGLLQPIGRALMLPIAVLPVAGLLLRLGQPDLLDLPLLAASGDALFSSLGLLFAIGVAAGIARDGNGAACLAGVVC YLVTMNGGKALLPVPTDVTLGLADTLAQTVARAWKAKAFARLDVPIGIVSGLLGGALYNRFSTIAVPAYLAFFGGRRFVP IVAGGAGVVLAGVVGLGFPALDAALDHGSRGLVAAGPVGLFAFGVLNRLLLVTGLHHILNNVAWFVLGDFGGTTGDLRRF FAGDPHAGAFMAGFFPIMMFGLPAACLAMYRAALPDQRKATGGMLLSLALTSFLTGVTEPIEFSFMFLAPMLYAVHAVLT GAAMVLMDVLGVRMGFGFSAGLFDYVLNFGRATRPLLLLPVGLAYFAIYYAVFSYAIRRFDLATPGRQPLAPSGQQETGT DGELGHAYVEALGGAANIATLGACTTRLRLVVRDPAAVDDAALKALGAVAVLRPAADAVQVIIGPMADRICAEMADVVKH APAAPAATPVRSEALAVSLRPEILAALGGADAVVQASRAAGRIRVTFRRDADLAAMAPVPGLRCVARIDARTWHLIGQDL AV
Sequences:
>Translated_562_residues MRNLLGLLQPIGRALMLPIAVLPVAGLLLRLGQPDLLDLPLLAASGDALFSSLGLLFAIGVAAGIARDGNGAACLAGVVC YLVTMNGGKALLPVPTDVTLGLADTLAQTVARAWKAKAFARLDVPIGIVSGLLGGALYNRFSTIAVPAYLAFFGGRRFVP IVAGGAGVVLAGVVGLGFPALDAALDHGSRGLVAAGPVGLFAFGVLNRLLLVTGLHHILNNVAWFVLGDFGGTTGDLRRF FAGDPHAGAFMAGFFPIMMFGLPAACLAMYRAALPDQRKATGGMLLSLALTSFLTGVTEPIEFSFMFLAPMLYAVHAVLT GAAMVLMDVLGVRMGFGFSAGLFDYVLNFGRATRPLLLLPVGLAYFAIYYAVFSYAIRRFDLATPGRQPLAPSGQQETGT DGELGHAYVEALGGAANIATLGACTTRLRLVVRDPAAVDDAALKALGAVAVLRPAADAVQVIIGPMADRICAEMADVVKH APAAPAATPVRSEALAVSLRPEILAALGGADAVVQASRAAGRIRVTFRRDADLAAMAPVPGLRCVARIDARTWHLIGQDL AV >Mature_562_residues MRNLLGLLQPIGRALMLPIAVLPVAGLLLRLGQPDLLDLPLLAASGDALFSSLGLLFAIGVAAGIARDGNGAACLAGVVC YLVTMNGGKALLPVPTDVTLGLADTLAQTVARAWKAKAFARLDVPIGIVSGLLGGALYNRFSTIAVPAYLAFFGGRRFVP IVAGGAGVVLAGVVGLGFPALDAALDHGSRGLVAAGPVGLFAFGVLNRLLLVTGLHHILNNVAWFVLGDFGGTTGDLRRF FAGDPHAGAFMAGFFPIMMFGLPAACLAMYRAALPDQRKATGGMLLSLALTSFLTGVTEPIEFSFMFLAPMLYAVHAVLT GAAMVLMDVLGVRMGFGFSAGLFDYVLNFGRATRPLLLLPVGLAYFAIYYAVFSYAIRRFDLATPGRQPLAPSGQQETGT DGELGHAYVEALGGAANIATLGACTTRLRLVVRDPAAVDDAALKALGAVAVLRPAADAVQVIIGPMADRICAEMADVVKH APAAPAATPVRSEALAVSLRPEILAALGGADAVVQASRAAGRIRVTFRRDADLAAMAPVPGLRCVARIDARTWHLIGQDL AV
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG1263
COG function: function code G; Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIC type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786894, Length=496, Percent_Identity=47.1774193548387, Blast_Score=378, Evalue=1e-106, Organism=Escherichia coli, GI1787343, Length=491, Percent_Identity=39.1038696537678, Blast_Score=316, Evalue=3e-87, Organism=Escherichia coli, GI1787908, Length=537, Percent_Identity=34.8230912476723, Blast_Score=233, Evalue=3e-62,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018113 - InterPro: IPR001996 - InterPro: IPR003352 - InterPro: IPR013013 - InterPro: IPR011535 - InterPro: IPR010974 [H]
Pfam domain/function: PF00367 PTS_EIIB; PF02378 PTS_EIIC [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 58081; Mature: 58081
Theoretical pI: Translated: 8.97; Mature: 8.97
Prosite motif: PS01035 PTS_EIIB_TYPE_1_CYS ; PS51098 PTS_EIIB_TYPE_1 ; PS51103 PTS_EIIC_TYPE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNLLGLLQPIGRALMLPIAVLPVAGLLLRLGQPDLLDLPLLAASGDALFSSLGLLFAIG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH VAAGIARDGNGAACLAGVVCYLVTMNGGKALLPVPTDVTLGLADTLAQTVARAWKAKAFA HHHHHCCCCCCHHHHHHHHHHHHEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH RLDVPIGIVSGLLGGALYNRFSTIAVPAYLAFFGGRRFVPIVAGGAGVVLAGVVGLGFPA EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCHH LDAALDHGSRGLVAAGPVGLFAFGVLNRLLLVTGLHHILNNVAWFVLGDFGGTTGDLRRF HHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHH FAGDPHAGAFMAGFFPIMMFGLPAACLAMYRAALPDQRKATGGMLLSLALTSFLTGVTEP HCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC IEFSFMFLAPMLYAVHAVLTGAAMVLMDVLGVRMGFGFSAGLFDYVLNFGRATRPLLLLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHH VGLAYFAIYYAVFSYAIRRFDLATPGRQPLAPSGQQETGTDGELGHAYVEALGGAANIAT HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHH LGACTTRLRLVVRDPAAVDDAALKALGAVAVLRPAADAVQVIIGPMADRICAEMADVVKH HHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APAAPAATPVRSEALAVSLRPEILAALGGADAVVQASRAAGRIRVTFRRDADLAAMAPVP CCCCCCCCCCCCHHEEEECCHHHHHHHCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC GLRCVARIDARTWHLIGQDLAV CHHHHHHHCCHHHHHHHHHCCC >Mature Secondary Structure MRNLLGLLQPIGRALMLPIAVLPVAGLLLRLGQPDLLDLPLLAASGDALFSSLGLLFAIG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH VAAGIARDGNGAACLAGVVCYLVTMNGGKALLPVPTDVTLGLADTLAQTVARAWKAKAFA HHHHHCCCCCCHHHHHHHHHHHHEECCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH RLDVPIGIVSGLLGGALYNRFSTIAVPAYLAFFGGRRFVPIVAGGAGVVLAGVVGLGFPA EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCHH LDAALDHGSRGLVAAGPVGLFAFGVLNRLLLVTGLHHILNNVAWFVLGDFGGTTGDLRRF HHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHH FAGDPHAGAFMAGFFPIMMFGLPAACLAMYRAALPDQRKATGGMLLSLALTSFLTGVTEP HCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC IEFSFMFLAPMLYAVHAVLTGAAMVLMDVLGVRMGFGFSAGLFDYVLNFGRATRPLLLLP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHH VGLAYFAIYYAVFSYAIRRFDLATPGRQPLAPSGQQETGTDGELGHAYVEALGGAANIAT HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHH LGACTTRLRLVVRDPAAVDDAALKALGAVAVLRPAADAVQVIIGPMADRICAEMADVVKH HHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APAAPAATPVRSEALAVSLRPEILAALGGADAVVQASRAAGRIRVTFRRDADLAAMAPVP CCCCCCCCCCCCHHEEEECCHHHHHHHCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC GLRCVARIDARTWHLIGQDLAV CHHHHHHHCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9272861; 9384377 [H]