Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87200424
Identifier: 87200424
GI number: 87200424
Start: 2581270
End: 2583744
Strand: Reverse
Name: 87200424
Synonym: Saro_2411
Alternate gene names: NA
Gene position: 2583744-2581270 (Counterclockwise)
Preceding gene: 87200425
Following gene: 87200422
Centisome position: 72.54
GC content: 70.02
Gene sequence:
>2475_bases ATGACGCCGACCGGCCTGCATCGCCGCGAGGTCCTGTCGCTGCTGGGCACGACAGCCTGTACCATCGCCGCCTCTGCCCA CGCTTCGGCACCCGCTGGCGCGCTTTCCCCGTCGCCTGCTGATCCGCACCATCGCCTCGTCTTCGACAGCCCCGCGCGCG AATGGATCGAGGCGCTCCCCGTCGGCAACGGCCGCCTCGGCGCAATGATGCACGGCCTGCTCGATGGCGAGCGACTCTCG CTCAACGAGGACACGCTCTGGTCGGGCCAGCCCTCGGTCGGCGGGGCCGCCGCCGACGGCCTCCTCGAACAGATGCGCGA TCTGATCTTCGCTGGCGACTATCCGGGGGCAGACCGCCTCGCGCGCCGGATGCAGGGCCACTTCAGCGAGGCTTACCTGC CGCTGGCCGACCTCCACGTCGATCTCGATCAAGCCGGTCCCGCCCGCGCGATCCGCCGCACGCTCGACCTTCGCGAAGCC ACTGCCGGGGTCGAGATCGACCGCGATGGCGGCATTGAACGGCGCACGCTCTTTGTCTCGGCCCCGGCGCAACTCGTGGT GTTCAGGATCGAGCGTGAGGGCGCCGCCCGCTTCGGCGCCAGCGTGCGCCTCGACTGCCAGCTTCGCTCTTCCATCCGCG CCGTATCGCCCCGCCGCCTCGTCCTCGCCGGCAAGGCGCCCACGGTGTGCGAGCCCGACTATCGCAACGTCCCGGACCCC GTTCGCTATTCCGACCGCGCCGGCTACGGCATGGCCTTCGCCGCGATTGCCGAGATCGACACCGACGGCTCAGTCCGAAA GGGGGAGGGCGCTCTTCGGGTCGAGAACGCCGGCTGGCTCGAGATTCGCCTTGCCGCCGCCACCGGCTATCGTGGCCCCC ACGTCCTGCCCGACCTCGATCCCGGCGCGGTGGAGGCGCTGGCAGCCGCGCCCTTGCGCCGCGCAAGGGGCAAGCCGCAC ACCCGCCTTCTGGCCGACCACCGCCGCGATCACCGCGCGCTGTATGAACGGTCCGCGCTCGCGCTCGGCGGCGGCGACAC CGCCCGGCGGCACGATGGCCTGCCCACCGATGCGCGCCGCGCCGCCGATCCGGGCGACCCCGCGCTCGCGGCGCTGCTCT ACAATTACGGCCGCTATCTGCTGATCGCGAGTTCCCGGCCCGGAACGCGTCCGGCGAACCTCCAGGGCATCTGGAACGCG CAATTGCGCGCGCCGTGGAGCTGCAACTACACCACCAACATCAACGTGCCGATGAACTACTGGATGGCCGAGACCGCCAA CCTCGCCGATTGCCATCGTCCGCTGGTCGATTTCGCCGAAGCGCTGGCGCGGAATGGCGGCGACACCGCGCGCGATTACT ACCGGATGCCCGGCTGGTGCCTGCACCACAACACCGACCTGTGGGCCATGTCTAATCCGGTCGGCGCGGGCGAGGGCGAT CCCAACTGGGCCAACTGGCCGATGGGTGCGCCATGGATCGCGCAGCACTTGTGGGAACACTACCGCTTCTCGGGCGACCT GGCGTTCCTGCGCGACCGCGCCTGGCCGGTAATGCGCGGCGCGGCGGATTTCTGCGTCGGCTGGCTGGTACGCGATCCCG CCTCGGGCCAACTCACTACCGCCCCCTCGATCTCGCCCGAAAACCTCTTTGTGACGGCCGATGGCCGGACGGCCGCAATC AGCGCGGGGTGCACGATGGACATCGCCATGATCCGCGAGCTGTTCGGCAACTGCATCGCCGCCGCCGCCGTCCTGGGCGA GGATGCCGCCTTCGCGAAAGTCTTGCGCAACCTGTCCGAAGAGCTTCCTCCCTACCGCATCGGCCGCCACGGCCAGTTGC AGGAATGGTCGGTCGATTTCGCGGAACAGGACCCGGGACACCGGACAGTCTCGCACCTCTATCCGATCTTTCCAGGCGGC GATATCACGCCCCGCCGCTCGCCTCGACTGGCAGCGGCAGCCGCGCGCTCGCTCGACCGGCGCGAGGCGCATGGTGGCAG CTCAACCGGATGGTCGCGCGCCTGGGCCACGGCAATCCGCGCGCGTCTTGGCGATGGCAAGGCTTGCGGAGAGGCGCTCG AACGTTTCCTCGCCGATCACGTCGCGCGCAGCCTGTTAGGCACTCACCCATTCCATCCGCATCCGGTCTTCCAGATCGAC GCGAACCTCGGCATCGCTGCGGCGATCGCCGAATGTCTCGTGCAGAGCCACGAGGACCGGATCGAGCTGTTTCCCGCCCT GCCGCCGCGCTGGCGGGAAGGGGCAGTGAAGGGCCTGCGCACGCGGCACGGGGCAACGGTCGATCTCGAATGGACGCCCG CAGGCGCGACCGTTCTCCTTCATGCGCGGCGCGGCGGCACGGTCACGGTCGGCCTCCCGCCCTCGCTCCGTCCCTCTTCC GGCGCCGCCGTGGCGCAGGTCGATCTGCGCGTCGGCAGGGATCGCACAGCCAGGCTTGCCCTGATCGCCGTCTGA
Upstream 100 bases:
>100_bases CGGCAATGGCCCCGGTCCCCGGCCTGCGCTGCGTCGCCCGCATCGACGCGCGGACCTGGCACCTCATCGGCCAGGACCTC GCGGTCTGAGCCGCGCGGCG
Downstream 100 bases:
>100_bases CCCACCGTTCGCGTCTACCCCCGACCATTCACCCCCCTGATCGCCAACCTTGCCCCGGCTTCTCACCGGAGGCGTTCACG CGCGCACGTACCGCGGTCAC
Product: twin-arginine translocation pathway signal protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family; Large Secreted Protein; Fibronectin Type III Domain Protein; Twin-Arginine Translocation Pathway Signal; Glycoside Hydrolase Family Protein; Six-Hairpin Glycosidase; 1 2-Alpha-L-Fucosidase; Alpha/Beta Hydrolase Domain-Containing Protein; Alpha-Fucosidase; Trehalose And Maltose Hydrolase-Like Protein; Fibronectin Type III Domain-Containing Protein; 1 2-A-L-Fucosidase; Ricin B Lectin; Coagulation Factor 5/8 Type Domain-Containing Protein; Glycosyl Hydrolase; F5/8 Type C Domain-Containing Protein; Candidate Alpha-L-Fucosidase; Glycosyl Hydrolase Family Protein
Number of amino acids: Translated: 824; Mature: 823
Protein sequence:
>824_residues MTPTGLHRREVLSLLGTTACTIAASAHASAPAGALSPSPADPHHRLVFDSPAREWIEALPVGNGRLGAMMHGLLDGERLS LNEDTLWSGQPSVGGAAADGLLEQMRDLIFAGDYPGADRLARRMQGHFSEAYLPLADLHVDLDQAGPARAIRRTLDLREA TAGVEIDRDGGIERRTLFVSAPAQLVVFRIEREGAARFGASVRLDCQLRSSIRAVSPRRLVLAGKAPTVCEPDYRNVPDP VRYSDRAGYGMAFAAIAEIDTDGSVRKGEGALRVENAGWLEIRLAAATGYRGPHVLPDLDPGAVEALAAAPLRRARGKPH TRLLADHRRDHRALYERSALALGGGDTARRHDGLPTDARRAADPGDPALAALLYNYGRYLLIASSRPGTRPANLQGIWNA QLRAPWSCNYTTNINVPMNYWMAETANLADCHRPLVDFAEALARNGGDTARDYYRMPGWCLHHNTDLWAMSNPVGAGEGD PNWANWPMGAPWIAQHLWEHYRFSGDLAFLRDRAWPVMRGAADFCVGWLVRDPASGQLTTAPSISPENLFVTADGRTAAI SAGCTMDIAMIRELFGNCIAAAAVLGEDAAFAKVLRNLSEELPPYRIGRHGQLQEWSVDFAEQDPGHRTVSHLYPIFPGG DITPRRSPRLAAAAARSLDRREAHGGSSTGWSRAWATAIRARLGDGKACGEALERFLADHVARSLLGTHPFHPHPVFQID ANLGIAAAIAECLVQSHEDRIELFPALPPRWREGAVKGLRTRHGATVDLEWTPAGATVLLHARRGGTVTVGLPPSLRPSS GAAVAQVDLRVGRDRTARLALIAV
Sequences:
>Translated_824_residues MTPTGLHRREVLSLLGTTACTIAASAHASAPAGALSPSPADPHHRLVFDSPAREWIEALPVGNGRLGAMMHGLLDGERLS LNEDTLWSGQPSVGGAAADGLLEQMRDLIFAGDYPGADRLARRMQGHFSEAYLPLADLHVDLDQAGPARAIRRTLDLREA TAGVEIDRDGGIERRTLFVSAPAQLVVFRIEREGAARFGASVRLDCQLRSSIRAVSPRRLVLAGKAPTVCEPDYRNVPDP VRYSDRAGYGMAFAAIAEIDTDGSVRKGEGALRVENAGWLEIRLAAATGYRGPHVLPDLDPGAVEALAAAPLRRARGKPH TRLLADHRRDHRALYERSALALGGGDTARRHDGLPTDARRAADPGDPALAALLYNYGRYLLIASSRPGTRPANLQGIWNA QLRAPWSCNYTTNINVPMNYWMAETANLADCHRPLVDFAEALARNGGDTARDYYRMPGWCLHHNTDLWAMSNPVGAGEGD PNWANWPMGAPWIAQHLWEHYRFSGDLAFLRDRAWPVMRGAADFCVGWLVRDPASGQLTTAPSISPENLFVTADGRTAAI SAGCTMDIAMIRELFGNCIAAAAVLGEDAAFAKVLRNLSEELPPYRIGRHGQLQEWSVDFAEQDPGHRTVSHLYPIFPGG DITPRRSPRLAAAAARSLDRREAHGGSSTGWSRAWATAIRARLGDGKACGEALERFLADHVARSLLGTHPFHPHPVFQID ANLGIAAAIAECLVQSHEDRIELFPALPPRWREGAVKGLRTRHGATVDLEWTPAGATVLLHARRGGTVTVGLPPSLRPSS GAAVAQVDLRVGRDRTARLALIAV >Mature_823_residues TPTGLHRREVLSLLGTTACTIAASAHASAPAGALSPSPADPHHRLVFDSPAREWIEALPVGNGRLGAMMHGLLDGERLSL NEDTLWSGQPSVGGAAADGLLEQMRDLIFAGDYPGADRLARRMQGHFSEAYLPLADLHVDLDQAGPARAIRRTLDLREAT AGVEIDRDGGIERRTLFVSAPAQLVVFRIEREGAARFGASVRLDCQLRSSIRAVSPRRLVLAGKAPTVCEPDYRNVPDPV RYSDRAGYGMAFAAIAEIDTDGSVRKGEGALRVENAGWLEIRLAAATGYRGPHVLPDLDPGAVEALAAAPLRRARGKPHT RLLADHRRDHRALYERSALALGGGDTARRHDGLPTDARRAADPGDPALAALLYNYGRYLLIASSRPGTRPANLQGIWNAQ LRAPWSCNYTTNINVPMNYWMAETANLADCHRPLVDFAEALARNGGDTARDYYRMPGWCLHHNTDLWAMSNPVGAGEGDP NWANWPMGAPWIAQHLWEHYRFSGDLAFLRDRAWPVMRGAADFCVGWLVRDPASGQLTTAPSISPENLFVTADGRTAAIS AGCTMDIAMIRELFGNCIAAAAVLGEDAAFAKVLRNLSEELPPYRIGRHGQLQEWSVDFAEQDPGHRTVSHLYPIFPGGD ITPRRSPRLAAAAARSLDRREAHGGSSTGWSRAWATAIRARLGDGKACGEALERFLADHVARSLLGTHPFHPHPVFQIDA NLGIAAAIAECLVQSHEDRIELFPALPPRWREGAVKGLRTRHGATVDLEWTPAGATVLLHARRGGTVTVGLPPSLRPSSG AAVAQVDLRVGRDRTARLALIAV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 89142; Mature: 89011
Theoretical pI: Translated: 7.84; Mature: 7.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPTGLHRREVLSLLGTTACTIAASAHASAPAGALSPSPADPHHRLVFDSPAREWIEALP CCCCCCHHHHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCC VGNGRLGAMMHGLLDGERLSLNEDTLWSGQPSVGGAAADGLLEQMRDLIFAGDYPGADRL CCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCHHHH ARRMQGHFSEAYLPLADLHVDLDQAGPARAIRRTLDLREATAGVEIDRDGGIERRTLFVS HHHHHCCHHHHCCCHHHEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEE APAQLVVFRIEREGAARFGASVRLDCQLRSSIRAVSPRRLVLAGKAPTVCEPDYRNVPDP CCCEEEEEEEECCCHHHCCCCEEEEEHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC VRYSDRAGYGMAFAAIAEIDTDGSVRKGEGALRVENAGWLEIRLAAATGYRGPHVLPDLD CCCCCCCCCCEEEEEEEEECCCCCEECCCCCEEECCCCEEEEEEEEECCCCCCCCCCCCC PGAVEALAAAPLRRARGKPHTRLLADHRRDHRALYERSALALGGGDTARRHDGLPTDARR CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHCCCCCCHHHH AADPGDPALAALLYNYGRYLLIASSRPGTRPANLQGIWNAQLRAPWSCNYTTNINVPMNY CCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCHHH WMAETANLADCHRPLVDFAEALARNGGDTARDYYRMPGWCLHHNTDLWAMSNPVGAGEGD HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCEEEECCCCCCCCCC PNWANWPMGAPWIAQHLWEHYRFSGDLAFLRDRAWPVMRGAADFCVGWLVRDPASGQLTT CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCHHHHHHHHEECCCCCCEEE APSISPENLFVTADGRTAAISAGCTMDIAMIRELFGNCIAAAAVLGEDAAFAKVLRNLSE CCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ELPPYRIGRHGQLQEWSVDFAEQDPGHRTVSHLYPIFPGGDITPRRSPRLAAAAARSLDR HCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH REAHGGSSTGWSRAWATAIRARLGDGKACGEALERFLADHVARSLLGTHPFHPHPVFQID HHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE ANLGIAAAIAECLVQSHEDRIELFPALPPRWREGAVKGLRTRHGATVDLEWTPAGATVLL CCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEE HARRGGTVTVGLPPSLRPSSGAAVAQVDLRVGRDRTARLALIAV EECCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEC >Mature Secondary Structure TPTGLHRREVLSLLGTTACTIAASAHASAPAGALSPSPADPHHRLVFDSPAREWIEALP CCCCCHHHHHHHHHCCHHHHEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCC VGNGRLGAMMHGLLDGERLSLNEDTLWSGQPSVGGAAADGLLEQMRDLIFAGDYPGADRL CCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCCHHHH ARRMQGHFSEAYLPLADLHVDLDQAGPARAIRRTLDLREATAGVEIDRDGGIERRTLFVS HHHHHCCHHHHCCCHHHEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEEE APAQLVVFRIEREGAARFGASVRLDCQLRSSIRAVSPRRLVLAGKAPTVCEPDYRNVPDP CCCEEEEEEEECCCHHHCCCCEEEEEHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCC VRYSDRAGYGMAFAAIAEIDTDGSVRKGEGALRVENAGWLEIRLAAATGYRGPHVLPDLD CCCCCCCCCCEEEEEEEEECCCCCEECCCCCEEECCCCEEEEEEEEECCCCCCCCCCCCC PGAVEALAAAPLRRARGKPHTRLLADHRRDHRALYERSALALGGGDTARRHDGLPTDARR CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHCCCCCCHHHH AADPGDPALAALLYNYGRYLLIASSRPGTRPANLQGIWNAQLRAPWSCNYTTNINVPMNY CCCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCHHH WMAETANLADCHRPLVDFAEALARNGGDTARDYYRMPGWCLHHNTDLWAMSNPVGAGEGD HHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCEEEECCCCCCCCCC PNWANWPMGAPWIAQHLWEHYRFSGDLAFLRDRAWPVMRGAADFCVGWLVRDPASGQLTT CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHCCCHHHHCCHHHHHHHHEECCCCCCEEE APSISPENLFVTADGRTAAISAGCTMDIAMIRELFGNCIAAAAVLGEDAAFAKVLRNLSE CCCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH ELPPYRIGRHGQLQEWSVDFAEQDPGHRTVSHLYPIFPGGDITPRRSPRLAAAAARSLDR HCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH REAHGGSSTGWSRAWATAIRARLGDGKACGEALERFLADHVARSLLGTHPFHPHPVFQID HHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE ANLGIAAAIAECLVQSHEDRIELFPALPPRWREGAVKGLRTRHGATVDLEWTPAGATVLL CCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEE HARRGGTVTVGLPPSLRPSSGAAVAQVDLRVGRDRTARLALIAV EECCCCEEEEECCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA