Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87200389
Identifier: 87200389
GI number: 87200389
Start: 2525951
End: 2527939
Strand: Reverse
Name: 87200389
Synonym: Saro_2376
Alternate gene names: NA
Gene position: 2527939-2525951 (Counterclockwise)
Preceding gene: 87200390
Following gene: 87200388
Centisome position: 70.98
GC content: 64.66
Gene sequence:
>1989_bases ATGCGCATGCCATTGCCCCTGAGGCAGGGAACCGCCGTCGCACTTGCTCTCTCGCTTGCGCTTTCCGGGTGCGGCGGGGG TGACTCCTCGTCGGGTGGCACGTTCACGCCCACCCCGACGCCCAGCTCGTCCGGGCGTTTCTTCGCTGACCCGGCGCAGG AAGCGCTGACGGTTGCCGAGGTCCAGCAGATCGTTGCCCAGGCCGTGGGCGAGGCGAAGGCCTTGAACTATCCCGCAATC GTCGCCGTCGTCGACCGTGTCGGGAATGTCCTTGCCGTGTTCCGTATGAACGGCGCCGTCACGCGCATGATCACCAGCCA GCGGACGGCGACCGGGGAAATCTCCCCCCGCGAAGTCGATGCGCAGGGTCTCGAGGTCGAGGCTACCATGGGCGCGATTT CCAAGGCGATCACTGCGGCGTATCTTTCATCGAGCGGCAATGCCTTTTCGACCCGCACGGCGAGCATGATCGTGCAGGAG CATTTCCCGCCCGCGTCGAACACCCCCGGGCTGGAAGCCGGACCGTTGTTCGGGGTGCAGTTCAGCCAGCTCCCCTGTTC GGATCTTGCTTCTCGCTTTGTCACCGGCAATGCGGGCTCTTCGGCCTTCATCGGCCCCAAGCGCTCGCCGCTTGGCTTGG CGGCCGATCCCGGAGGACTTCCTCTCTACAAGAACGGCGTCGTCGTTGGCGGGATCGGGATCATGGCCGATGGCGACTAC GGCTACGATCCCAACGTCCTAGACGTCGATGGCGATCCCGAGGAATACATGGCGCTGGCCGGCATCCAGGGCTTCGCTCC TCCGGCCGACATCCGAGCCGACCGCATCCCGGTTGACGGATCGACGCTGCGCTTTGCCGATGCGCGCGAGGAGGGGCTCC ATCCTCTTCAGACCAGCTTTGCCGCAATCAACAACGTTATCGGCACGCTCGTGCCGGTACGCGGCTATTTCGACGGCACC GGCGTGGTCGCAGGGACGCCGTACGGCAGCGAAAGCAGTGGCATCCGCCGGGCGACCACGGCCGAGTTTTCCCTCCCGGA TGCCTATGTCCTGACCAATGGTTCGGGTTCGGATCGCTATCCGATCAGGGGCGGCACAGATTCGGCAGCTGTGGGCCAGC CGCTCACCGCAGCCGAAGTGAGGGCGGTTCTGGAGGAAGCGTTTACGATAATGACGCGTGCCCGCGCGCAGATTCGTCGC CCGCTTGACAGCCGGGCCCAGGTTTCGATGTCGGTCGTGGATACCTATGGCGAGGTGCTTGGTCTCGTTCGCGGGCCCGA TGCTCCCATCTTCGGCATCGACGTGTCGCTGCAAAAGGCCCGCACGGCAGCTTTCTTCTCGAACCCGGTCGCCGCCGAAC AGCTTCTTGCCGATACCGACGCCGAAATCCCCGCCTTCGTCCAGCGCGTCCGCGATTTTCTGGGCGATCAGAGCGCGCTG ACGGGGAAGGTCGCCTTTGCAGACCGTTCGGGCGGGAATCTCTCGCGACCATTCTTCCCCGACGGCGAATTGGGGCGACC AAATGGACCGTTCTCGCGTCCGATTACCGATTTCAACCCGTTCGCGACCGGGCTTCAGATCGCTCTCGTGAAGGCCAACC TGCTGCAGCACGCGGTCTTCGTGCAGAACAGCTTGAATGCCCGTGACGTGGCGCAGACCTGTACGGCGGTGCCGGACACG CCAACGGGGCGCAAGCGTCTGGCCAACGGCATCCAGATATTCCCCGGTTCGGTTCCGATCTATCGCGGCGACAAGCTGGT CGGCGCGATTGGCATTTCCGGCGATGGCATCGACCAGGATGACATGATCGCCTTCCTTGGAGCGCACAACGGCGGCGTGC GGGTCGGCAGTATCGGCAATGCACCCAAGGCGATCCGCGCGGACACGATCGTCGTCCCGATCGGGGCGGGGGTGCGGCTG CGCTACGTGAACTGTCCGTTCTCGCCGTTCCTCGATACCTCCGACCAGAACGTCTGCGAGGGCAAGTGA
Upstream 100 bases:
>100_bases ACCAGGCCTATGCCGCTGTACGCGACCCCAATGGTTTCCAGCCGTTTGCCTTCCGTCGCGCGCTCGGTGGTGCCGTCCGA TCGATCCGGAGCCTCCGCTG
Downstream 100 bases:
>100_bases TGCAGCAGGTCGTCGCCCTGATCGCGCCCGCCCTGGGAATGGCCAGTCCCGCTCCCATGGCGCTGCCGTACCATGTCCTT GCCGCCGTCGAGGCTGCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 662; Mature: 662
Protein sequence:
>662_residues MRMPLPLRQGTAVALALSLALSGCGGGDSSSGGTFTPTPTPSSSGRFFADPAQEALTVAEVQQIVAQAVGEAKALNYPAI VAVVDRVGNVLAVFRMNGAVTRMITSQRTATGEISPREVDAQGLEVEATMGAISKAITAAYLSSSGNAFSTRTASMIVQE HFPPASNTPGLEAGPLFGVQFSQLPCSDLASRFVTGNAGSSAFIGPKRSPLGLAADPGGLPLYKNGVVVGGIGIMADGDY GYDPNVLDVDGDPEEYMALAGIQGFAPPADIRADRIPVDGSTLRFADAREEGLHPLQTSFAAINNVIGTLVPVRGYFDGT GVVAGTPYGSESSGIRRATTAEFSLPDAYVLTNGSGSDRYPIRGGTDSAAVGQPLTAAEVRAVLEEAFTIMTRARAQIRR PLDSRAQVSMSVVDTYGEVLGLVRGPDAPIFGIDVSLQKARTAAFFSNPVAAEQLLADTDAEIPAFVQRVRDFLGDQSAL TGKVAFADRSGGNLSRPFFPDGELGRPNGPFSRPITDFNPFATGLQIALVKANLLQHAVFVQNSLNARDVAQTCTAVPDT PTGRKRLANGIQIFPGSVPIYRGDKLVGAIGISGDGIDQDDMIAFLGAHNGGVRVGSIGNAPKAIRADTIVVPIGAGVRL RYVNCPFSPFLDTSDQNVCEGK
Sequences:
>Translated_662_residues MRMPLPLRQGTAVALALSLALSGCGGGDSSSGGTFTPTPTPSSSGRFFADPAQEALTVAEVQQIVAQAVGEAKALNYPAI VAVVDRVGNVLAVFRMNGAVTRMITSQRTATGEISPREVDAQGLEVEATMGAISKAITAAYLSSSGNAFSTRTASMIVQE HFPPASNTPGLEAGPLFGVQFSQLPCSDLASRFVTGNAGSSAFIGPKRSPLGLAADPGGLPLYKNGVVVGGIGIMADGDY GYDPNVLDVDGDPEEYMALAGIQGFAPPADIRADRIPVDGSTLRFADAREEGLHPLQTSFAAINNVIGTLVPVRGYFDGT GVVAGTPYGSESSGIRRATTAEFSLPDAYVLTNGSGSDRYPIRGGTDSAAVGQPLTAAEVRAVLEEAFTIMTRARAQIRR PLDSRAQVSMSVVDTYGEVLGLVRGPDAPIFGIDVSLQKARTAAFFSNPVAAEQLLADTDAEIPAFVQRVRDFLGDQSAL TGKVAFADRSGGNLSRPFFPDGELGRPNGPFSRPITDFNPFATGLQIALVKANLLQHAVFVQNSLNARDVAQTCTAVPDT PTGRKRLANGIQIFPGSVPIYRGDKLVGAIGISGDGIDQDDMIAFLGAHNGGVRVGSIGNAPKAIRADTIVVPIGAGVRL RYVNCPFSPFLDTSDQNVCEGK >Mature_662_residues MRMPLPLRQGTAVALALSLALSGCGGGDSSSGGTFTPTPTPSSSGRFFADPAQEALTVAEVQQIVAQAVGEAKALNYPAI VAVVDRVGNVLAVFRMNGAVTRMITSQRTATGEISPREVDAQGLEVEATMGAISKAITAAYLSSSGNAFSTRTASMIVQE HFPPASNTPGLEAGPLFGVQFSQLPCSDLASRFVTGNAGSSAFIGPKRSPLGLAADPGGLPLYKNGVVVGGIGIMADGDY GYDPNVLDVDGDPEEYMALAGIQGFAPPADIRADRIPVDGSTLRFADAREEGLHPLQTSFAAINNVIGTLVPVRGYFDGT GVVAGTPYGSESSGIRRATTAEFSLPDAYVLTNGSGSDRYPIRGGTDSAAVGQPLTAAEVRAVLEEAFTIMTRARAQIRR PLDSRAQVSMSVVDTYGEVLGLVRGPDAPIFGIDVSLQKARTAAFFSNPVAAEQLLADTDAEIPAFVQRVRDFLGDQSAL TGKVAFADRSGGNLSRPFFPDGELGRPNGPFSRPITDFNPFATGLQIALVKANLLQHAVFVQNSLNARDVAQTCTAVPDT PTGRKRLANGIQIFPGSVPIYRGDKLVGAIGISGDGIDQDDMIAFLGAHNGGVRVGSIGNAPKAIRADTIVVPIGAGVRL RYVNCPFSPFLDTSDQNVCEGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68836; Mature: 68836
Theoretical pI: Translated: 4.89; Mature: 4.89
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRMPLPLRQGTAVALALSLALSGCGGGDSSSGGTFTPTPTPSSSGRFFADPAQEALTVAE CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCEEECHHHHHHHHHH VQQIVAQAVGEAKALNYPAIVAVVDRVGNVLAVFRMNGAVTRMITSQRTATGEISPREVD HHHHHHHHHCCHHHCCCCHHHHHHHHHCCEEEEEECCCCEEEHHHCCCCCCCCCCCCCCC AQGLEVEATMGAISKAITAAYLSSSGNAFSTRTASMIVQEHFPPASNTPGLEAGPLFGVQ CCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEECCE FSQLPCSDLASRFVTGNAGSSAFIGPKRSPLGLAADPGGLPLYKNGVVVGGIGIMADGDY ECCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEECEEEEECCCC GYDPNVLDVDGDPEEYMALAGIQGFAPPADIRADRIPVDGSTLRFADAREEGLHPLQTSF CCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCHHHHHH AAINNVIGTLVPVRGYFDGTGVVAGTPYGSESSGIRRATTAEFSLPDAYVLTNGSGSDRY HHHHHHHHHHEEECEEECCCCEEEECCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCC PIRGGTDSAAVGQPLTAAEVRAVLEEAFTIMTRARAQIRRPLDSRAQVSMSVVDTYGEVL CCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH GLVRGPDAPIFGIDVSLQKARTAAFFSNPVAAEQLLADTDAEIPAFVQRVRDFLGDQSAL HHHCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC TGKVAFADRSGGNLSRPFFPDGELGRPNGPFSRPITDFNPFATGLQIALVKANLLQHAVF EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEHHHHHHHHHHH VQNSLNARDVAQTCTAVPDTPTGRKRLANGIQIFPGSVPIYRGDKLVGAIGISGDGIDQD HHCCCCHHHHHHHHHCCCCCCCCHHHHCCCCEECCCCCCEEECCEEEEEEECCCCCCCCC DMIAFLGAHNGGVRVGSIGNAPKAIRADTIVVPIGAGVRLRYVNCPFSPFLDTSDQNVCE CEEEEEECCCCCEEECCCCCCCCCEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC GK CC >Mature Secondary Structure MRMPLPLRQGTAVALALSLALSGCGGGDSSSGGTFTPTPTPSSSGRFFADPAQEALTVAE CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCEEECHHHHHHHHHH VQQIVAQAVGEAKALNYPAIVAVVDRVGNVLAVFRMNGAVTRMITSQRTATGEISPREVD HHHHHHHHHCCHHHCCCCHHHHHHHHHCCEEEEEECCCCEEEHHHCCCCCCCCCCCCCCC AQGLEVEATMGAISKAITAAYLSSSGNAFSTRTASMIVQEHFPPASNTPGLEAGPLFGVQ CCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEECCE FSQLPCSDLASRFVTGNAGSSAFIGPKRSPLGLAADPGGLPLYKNGVVVGGIGIMADGDY ECCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCEEEECEEEEECCCC GYDPNVLDVDGDPEEYMALAGIQGFAPPADIRADRIPVDGSTLRFADAREEGLHPLQTSF CCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCHHHHHH AAINNVIGTLVPVRGYFDGTGVVAGTPYGSESSGIRRATTAEFSLPDAYVLTNGSGSDRY HHHHHHHHHHEEECEEECCCCEEEECCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCC PIRGGTDSAAVGQPLTAAEVRAVLEEAFTIMTRARAQIRRPLDSRAQVSMSVVDTYGEVL CCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH GLVRGPDAPIFGIDVSLQKARTAAFFSNPVAAEQLLADTDAEIPAFVQRVRDFLGDQSAL HHHCCCCCCEEEEECCHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC TGKVAFADRSGGNLSRPFFPDGELGRPNGPFSRPITDFNPFATGLQIALVKANLLQHAVF EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEHHHHHHHHHHH VQNSLNARDVAQTCTAVPDTPTGRKRLANGIQIFPGSVPIYRGDKLVGAIGISGDGIDQD HHCCCCHHHHHHHHHCCCCCCCCHHHHCCCCEECCCCCCEEECCEEEEEEECCCCCCCCC DMIAFLGAHNGGVRVGSIGNAPKAIRADTIVVPIGAGVRLRYVNCPFSPFLDTSDQNVCE CEEEEEECCCCCEEECCCCCCCCCEECCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCC GK CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA