Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87200388
Identifier: 87200388
GI number: 87200388
Start: 2523933
End: 2525951
Strand: Reverse
Name: 87200388
Synonym: Saro_2375
Alternate gene names: NA
Gene position: 2525951-2523933 (Counterclockwise)
Preceding gene: 87200389
Following gene: 87200387
Centisome position: 70.92
GC content: 63.89
Gene sequence:
>2019_bases ATGCAGCAGGTCGTCGCCCTGATCGCGCCCGCCCTGGGAATGGCCAGTCCCGCTCCCATGGCGCTGCCGTACCATGTCCT TGCCGCCGTCGAGGCTGCCGGACCGGGAGCGATGGAACCGCAGGAGGCGAGCCCATCCGACCAGCAGCGGGCACCCGCCA CGGAGCCGCTGCCCGGAGGCGAAACGGATGCCGACGGGGCGCTGATCGACGGGCGCCGCCGACCGGGCTTCAACAAGCGC CTTCCGGACAAGGTGGAGCAGGACAATCCCGGCGCAGTGAATGCGCCGCCGCCCGAAGCGTTCTACGACAAGTACGACGG CGACGGTCCGATTGGAGATCTCGGCCTAGAGGTCGGCTTGCCCGACCGCTGGCGCATCATGTCCACCCTGTGCCCGCAGA AGGACGCGGCGACGGGCAAGAAGGACCGTTCGCTTTACACGCTGTTCCCCCGGCTCGAATATGTCTGCCATTCGCAGCTC GACCCGTTCCATCACAACCTTCTCAAGGGCGACCGTCCGCTAGCAAAGGGCAAGCGCCCCGGCTTCCTCAAGGGCGATGA CTGGTTCCTCATCGCGAGCGCTGTCTCGGATACCGTGGTCGAGCCCCGCAGCTTCCCGATCCCGGTCGGAAACCAGACCA CGACCAACCCTAACGAGATCGACGTCTTCGGTCGCAGCCACAGCCTTGTCCTGTCGCAGACCTTCATCGCCGGCCTTTCG CTCTTGAAGGGCATGACGGCGTACAAGCCGCCGGTCGTCGAATACCGCATCGCGATCGCAGGCAACCTCAATCACGTCGA AGTGCCGGAGCGGCGCGTCCTTTACGTGCAGCCATCCAAGGGCACCAAGCGCACCGACGGCTTCATCGGTCTGCAGGAAG CCTTCATCGACTATCACATCGGTCGCTTCGACACGAAGCGGTACGATTTCGTCAGCCTGCGCGCCGGCATTCAGCCGATG CAGTCCGATTTCCGCGGCTTCCTGTTCAACGACAACCAGCTTGGCGTCCGCCTGTTCGGCAACCGCGACAACAACCGCGT GCAGTTCAATCTCGCCGCGTTCTGGCGCCTGGAAAAGGAAACAAATTCCGGCCTGAACGACATCAGCCAGTCGCCGCGTC GGGACTGGGTGTTCATGGCCAACCTCTACCGGCAGGATTTCCCCTTCGTCGGCCTGACCAGCCAGGTCTCGGTCACGTAC AACATGAACCGGGAGCGCAACGACGTCCATGCGGACACCAACGGCTTCCCCGTGCGGCCTGCACTGCTGGGGGACCTGCG TGGCCGCGAATACGACGTTGTCTATCTCGGCTATGCGGCTGACGGGCACATCGGTCGACTGAACCTGACCGCGCAGCTCT ATGCGGCGCTGGGCGAGGACCGGAACAATTTTCTCACCAGCCGCCCCGCCGAGATCAAGGCATTCATGGCGGCGGCCGAG CTGAGCTACGACATCGACTGGACCCGCATCCGCCTTTCCGGCCTGTGGGCAAGCGGCGACAGTGACCCCTACGACAAGAC CGAAGGCGGCTTCGACGCAATCTTCGAGAATCCGCAATTCGCGGGCGCGGATACGAGCTATTGGATTCGCCAGACGATCC CGTTCGCCGGCGGTGGTCGCGCGATTTCGGTGAACGGTCGCAACGGCATTCTCAACAGCCTGCGGTCCAGCAAGGAGCAG GGGCAGTCGAACTTCACCAACCCGGGCACGATGATGCTGGGGCTGGGTGGCGATTTCGACCTTACGCCGACCGTGCGCGT CTCGACCAACGTCAACCACTTGTGGTTCGAGAACACCAAGATCCTGCAAGTCCTGCGTAACGAAGGCTCGATCCCCAACG ACATCGGCTGGGACACGTCGGTCTCGGCAATCTGGCGGCCCAATGCGTCGCAGAACCTGATCTTCCGCCTGTCGGGCGCC ATGCTCGAACCCGGCGGCGGCTTCGATGACCTGTTCTCGCAGCAGGGCAAGGCAAGCCGCTTCTATTCCGTCCTCGCCAA CGCGACCCTGGCCTTCTGA
Upstream 100 bases:
>100_bases TCGTCGTCCCGATCGGGGCGGGGGTGCGGCTGCGCTACGTGAACTGTCCGTTCTCGCCGTTCCTCGATACCTCCGACCAG AACGTCTGCGAGGGCAAGTG
Downstream 100 bases:
>100_bases TGAACAGGCTCATGACCCAAAAGCGCCGCAATCGCACTCTCCCGCTGGCATGGCTCGTCGCGGCGCTCGCTGCGTTTCTG GTGCCGAGCGCGCTCTACGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 672; Mature: 672
Protein sequence:
>672_residues MQQVVALIAPALGMASPAPMALPYHVLAAVEAAGPGAMEPQEASPSDQQRAPATEPLPGGETDADGALIDGRRRPGFNKR LPDKVEQDNPGAVNAPPPEAFYDKYDGDGPIGDLGLEVGLPDRWRIMSTLCPQKDAATGKKDRSLYTLFPRLEYVCHSQL DPFHHNLLKGDRPLAKGKRPGFLKGDDWFLIASAVSDTVVEPRSFPIPVGNQTTTNPNEIDVFGRSHSLVLSQTFIAGLS LLKGMTAYKPPVVEYRIAIAGNLNHVEVPERRVLYVQPSKGTKRTDGFIGLQEAFIDYHIGRFDTKRYDFVSLRAGIQPM QSDFRGFLFNDNQLGVRLFGNRDNNRVQFNLAAFWRLEKETNSGLNDISQSPRRDWVFMANLYRQDFPFVGLTSQVSVTY NMNRERNDVHADTNGFPVRPALLGDLRGREYDVVYLGYAADGHIGRLNLTAQLYAALGEDRNNFLTSRPAEIKAFMAAAE LSYDIDWTRIRLSGLWASGDSDPYDKTEGGFDAIFENPQFAGADTSYWIRQTIPFAGGGRAISVNGRNGILNSLRSSKEQ GQSNFTNPGTMMLGLGGDFDLTPTVRVSTNVNHLWFENTKILQVLRNEGSIPNDIGWDTSVSAIWRPNASQNLIFRLSGA MLEPGGGFDDLFSQQGKASRFYSVLANATLAF
Sequences:
>Translated_672_residues MQQVVALIAPALGMASPAPMALPYHVLAAVEAAGPGAMEPQEASPSDQQRAPATEPLPGGETDADGALIDGRRRPGFNKR LPDKVEQDNPGAVNAPPPEAFYDKYDGDGPIGDLGLEVGLPDRWRIMSTLCPQKDAATGKKDRSLYTLFPRLEYVCHSQL DPFHHNLLKGDRPLAKGKRPGFLKGDDWFLIASAVSDTVVEPRSFPIPVGNQTTTNPNEIDVFGRSHSLVLSQTFIAGLS LLKGMTAYKPPVVEYRIAIAGNLNHVEVPERRVLYVQPSKGTKRTDGFIGLQEAFIDYHIGRFDTKRYDFVSLRAGIQPM QSDFRGFLFNDNQLGVRLFGNRDNNRVQFNLAAFWRLEKETNSGLNDISQSPRRDWVFMANLYRQDFPFVGLTSQVSVTY NMNRERNDVHADTNGFPVRPALLGDLRGREYDVVYLGYAADGHIGRLNLTAQLYAALGEDRNNFLTSRPAEIKAFMAAAE LSYDIDWTRIRLSGLWASGDSDPYDKTEGGFDAIFENPQFAGADTSYWIRQTIPFAGGGRAISVNGRNGILNSLRSSKEQ GQSNFTNPGTMMLGLGGDFDLTPTVRVSTNVNHLWFENTKILQVLRNEGSIPNDIGWDTSVSAIWRPNASQNLIFRLSGA MLEPGGGFDDLFSQQGKASRFYSVLANATLAF >Mature_672_residues MQQVVALIAPALGMASPAPMALPYHVLAAVEAAGPGAMEPQEASPSDQQRAPATEPLPGGETDADGALIDGRRRPGFNKR LPDKVEQDNPGAVNAPPPEAFYDKYDGDGPIGDLGLEVGLPDRWRIMSTLCPQKDAATGKKDRSLYTLFPRLEYVCHSQL DPFHHNLLKGDRPLAKGKRPGFLKGDDWFLIASAVSDTVVEPRSFPIPVGNQTTTNPNEIDVFGRSHSLVLSQTFIAGLS LLKGMTAYKPPVVEYRIAIAGNLNHVEVPERRVLYVQPSKGTKRTDGFIGLQEAFIDYHIGRFDTKRYDFVSLRAGIQPM QSDFRGFLFNDNQLGVRLFGNRDNNRVQFNLAAFWRLEKETNSGLNDISQSPRRDWVFMANLYRQDFPFVGLTSQVSVTY NMNRERNDVHADTNGFPVRPALLGDLRGREYDVVYLGYAADGHIGRLNLTAQLYAALGEDRNNFLTSRPAEIKAFMAAAE LSYDIDWTRIRLSGLWASGDSDPYDKTEGGFDAIFENPQFAGADTSYWIRQTIPFAGGGRAISVNGRNGILNSLRSSKEQ GQSNFTNPGTMMLGLGGDFDLTPTVRVSTNVNHLWFENTKILQVLRNEGSIPNDIGWDTSVSAIWRPNASQNLIFRLSGA MLEPGGGFDDLFSQQGKASRFYSVLANATLAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 74153; Mature: 74153
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQVVALIAPALGMASPAPMALPYHVLAAVEAAGPGAMEPQEASPSDQQRAPATEPLPGG CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCC ETDADGALIDGRRRPGFNKRLPDKVEQDNPGAVNAPPPEAFYDKYDGDGPIGDLGLEVGL CCCCCCCEECCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCC PDRWRIMSTLCPQKDAATGKKDRSLYTLFPRLEYVCHSQLDPFHHNLLKGDRPLAKGKRP CCHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHCCCCCHHCCCCC GFLKGDDWFLIASAVSDTVVEPRSFPIPVGNQTTTNPNEIDVFGRSHSLVLSQTFIAGLS CCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEHHHHHHHHHH LLKGMTAYKPPVVEYRIAIAGNLNHVEVPERRVLYVQPSKGTKRTDGFIGLQEAFIDYHI HHHCCHHCCCCCEEEEEEEECCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHC GRFDTKRYDFVSLRAGIQPMQSDFRGFLFNDNQLGVRLFGNRDNNRVQFNLAAFWRLEKE CCCCCCCEEEEEEHHCCCHHHHCCCEEEECCCCEEEEEECCCCCCEEEEEEEEEEEEECH TNSGLNDISQSPRRDWVFMANLYRQDFPFVGLTSQVSVTYNMNRERNDVHADTNGFPVRP HCCCHHHHHCCCCCCEEEEEHHHHCCCCEEEECEEEEEEEECCCCCCCCCCCCCCCCCCH ALLGDLRGREYDVVYLGYAADGHIGRLNLTAQLYAALGEDRNNFLTSRPAEIKAFMAAAE HHHHHCCCCEEEEEEEEEECCCCEEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH LSYDIDWTRIRLSGLWASGDSDPYDKTEGGFDAIFENPQFAGADTSYWIRQTIPFAGGGR HCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEHEEECCCCCCCE AISVNGRNGILNSLRSSKEQGQSNFTNPGTMMLGLGGDFDLTPTVRVSTNVNHLWFENTK EEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCEEEECCHH ILQVLRNEGSIPNDIGWDTSVSAIWRPNASQNLIFRLSGAMLEPGGGFDDLFSQQGKASR HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCEECCCCCHHHHHHCCCCHHH FYSVLANATLAF HHHHHHHHHCCC >Mature Secondary Structure MQQVVALIAPALGMASPAPMALPYHVLAAVEAAGPGAMEPQEASPSDQQRAPATEPLPGG CHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCC ETDADGALIDGRRRPGFNKRLPDKVEQDNPGAVNAPPPEAFYDKYDGDGPIGDLGLEVGL CCCCCCCEECCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEECCC PDRWRIMSTLCPQKDAATGKKDRSLYTLFPRLEYVCHSQLDPFHHNLLKGDRPLAKGKRP CCHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHCCCCCHHCCCCC GFLKGDDWFLIASAVSDTVVEPRSFPIPVGNQTTTNPNEIDVFGRSHSLVLSQTFIAGLS CCCCCCCEEEEEECCCCHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEHHHHHHHHHH LLKGMTAYKPPVVEYRIAIAGNLNHVEVPERRVLYVQPSKGTKRTDGFIGLQEAFIDYHI HHHCCHHCCCCCEEEEEEEECCCCEEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHC GRFDTKRYDFVSLRAGIQPMQSDFRGFLFNDNQLGVRLFGNRDNNRVQFNLAAFWRLEKE CCCCCCCEEEEEEHHCCCHHHHCCCEEEECCCCEEEEEECCCCCCEEEEEEEEEEEEECH TNSGLNDISQSPRRDWVFMANLYRQDFPFVGLTSQVSVTYNMNRERNDVHADTNGFPVRP HCCCHHHHHCCCCCCEEEEEHHHHCCCCEEEECEEEEEEEECCCCCCCCCCCCCCCCCCH ALLGDLRGREYDVVYLGYAADGHIGRLNLTAQLYAALGEDRNNFLTSRPAEIKAFMAAAE HHHHHCCCCEEEEEEEEEECCCCEEEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH LSYDIDWTRIRLSGLWASGDSDPYDKTEGGFDAIFENPQFAGADTSYWIRQTIPFAGGGR HCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCEEHEEECCCCCCCE AISVNGRNGILNSLRSSKEQGQSNFTNPGTMMLGLGGDFDLTPTVRVSTNVNHLWFENTK EEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCEEEECCHH ILQVLRNEGSIPNDIGWDTSVSAIWRPNASQNLIFRLSGAMLEPGGGFDDLFSQQGKASR HHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCEECCCCCHHHHHHCCCCHHH FYSVLANATLAF HHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA