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The map label for this gene is rnk [H]

Identifier: 87198849

GI number: 87198849

Start: 880205

End: 880684

Strand: Direct

Name: rnk [H]

Synonym: Saro_0827

Alternate gene names: 87198849

Gene position: 880205-880684 (Clockwise)

Preceding gene: 87198847

Following gene: 87198850

Centisome position: 24.71

GC content: 66.25

Gene sequence:

>480_bases
ATGGAAGCAACAGGCGCCGATCGCGCGCCTTTCCCGTCCGCTCACCGGAAAGACATTATCATGACCACGCACCGGTCCGC
ATCCTTGCGGCCGCAAATCATCCTGATCGACAGCGAGGCGGATGCCCTGGCCGATCTTGCATTGGCAGCGAGCGACCGCC
TGCCCGAAATCTCGCGGATGCTGATGGAGGAGATTGGCCGCGCGCAGATCGTCCCCGCGCAGGACCTGCCCCCGGATGCG
GTGGCGATGCGTTCCGTCGTGCGCTTCCGCGACGAGGCGACCGGCGCGGTCCGCACTGTCACGCTCGTCTATCCCGCCGA
AGCGGACATCGCGCAGGATCGCGTCTCGATCCTGACGCCCGTAGGTGCCGGACTGATCGGCCTGCGCGCAGGGCAGTCCA
TCGACTGGCCCAACGTGCGCGGAAAGCAGCGCGCAATCACCATCGAGCAGGTCATCAAGCCAGGGGGCTGCCATGCATAG

Upstream 100 bases:

>100_bases
TCGACGTGCGCACTTTCCGTAATGCTGGCCTTGGAGGGCAGCTTCTCGTGGGCAACTAGCCCCGGGTTCCGGTGCGTGAC
GCCCCGGGCTCGGGGCATCG

Downstream 100 bases:

>100_bases
CGCAGCGGCGGATTCTTGTGCCGGCACGGAAATGCTCCTGCAGGTCACGGTCGATCGGCGTCGCCATGGCCGCAACGTTG
TTTTCGACGAGGCTGTCCGG

Product: GreA/GreB family elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MEATGADRAPFPSAHRKDIIMTTHRSASLRPQIILIDSEADALADLALAASDRLPEISRMLMEEIGRAQIVPAQDLPPDA
VAMRSVVRFRDEATGAVRTVTLVYPAEADIAQDRVSILTPVGAGLIGLRAGQSIDWPNVRGKQRAITIEQVIKPGGCHA

Sequences:

>Translated_159_residues
MEATGADRAPFPSAHRKDIIMTTHRSASLRPQIILIDSEADALADLALAASDRLPEISRMLMEEIGRAQIVPAQDLPPDA
VAMRSVVRFRDEATGAVRTVTLVYPAEADIAQDRVSILTPVGAGLIGLRAGQSIDWPNVRGKQRAITIEQVIKPGGCHA
>Mature_159_residues
MEATGADRAPFPSAHRKDIIMTTHRSASLRPQIILIDSEADALADLALAASDRLPEISRMLMEEIGRAQIVPAQDLPPDA
VAMRSVVRFRDEATGAVRTVTLVYPAEADIAQDRVSILTPVGAGLIGLRAGQSIDWPNVRGKQRAITIEQVIKPGGCHA

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=109, Percent_Identity=43.1192660550459, Blast_Score=78, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 17068; Mature: 17068

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEATGADRAPFPSAHRKDIIMTTHRSASLRPQIILIDSEADALADLALAASDRLPEISRM
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHH
LMEEIGRAQIVPAQDLPPDAVAMRSVVRFRDEATGAVRTVTLVYPAEADIAQDRVSILTP
HHHHCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCC
VGAGLIGLRAGQSIDWPNVRGKQRAITIEQVIKPGGCHA
CCCCEEEECCCCCCCCCCCCCCCCEEEHHHHHCCCCCCC
>Mature Secondary Structure
MEATGADRAPFPSAHRKDIIMTTHRSASLRPQIILIDSEADALADLALAASDRLPEISRM
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCHHHHHHHHHHHCCCCHHHHHH
LMEEIGRAQIVPAQDLPPDAVAMRSVVRFRDEATGAVRTVTLVYPAEADIAQDRVSILTP
HHHHCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCC
VGAGLIGLRAGQSIDWPNVRGKQRAITIEQVIKPGGCHA
CCCCEEEECCCCCCCCCCCCCCCCEEEHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]