Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198847
Identifier: 87198847
GI number: 87198847
Start: 878597
End: 879250
Strand: Direct
Name: 87198847
Synonym: Saro_0825
Alternate gene names: NA
Gene position: 878597-879250 (Clockwise)
Preceding gene: 87198846
Following gene: 87198849
Centisome position: 24.67
GC content: 68.04
Gene sequence:
>654_bases ATGCCATTGCGCGCATCGCCGGCAATCCCGGCGTTAGCCGTGGCGGGCGCCTTGGTGCTGGCCGGTTGCGGGAAGAAGGA AGCGCCTCCGCCGCCCGAAGCGACCGAGACCGGTTCCGCCGTGGTCAGCGCATCGGGCGCGGCGGTGGAAAGCGAGTTCG GTACGCCGATCAAGGATCGCGTGGCCACGCTGGGCTTTCTCAACAAGCGCAACAACATCACCCAGGACGTCGTGCTGAAG AGCGGCGAATCGCGCCGCATCGGCAATGCCATCGTCAAGCTTGCCACCTGCGAGAAGACCGCACCGTGGGAAGATCCGCC CGAAACCGGCGCCTTCGTCCAGCTCTTCGTCGAAGAGCGCGCCACGACCCAGGAAAAGCTCGCCTGGCGCAAGGTCTTCT CGGGGTGGCTGTTCCGTAACGCACCTTCGCTGAACGTTGTCGAGCACCCGGTCTATGACGTGTGGGTCAAGGACTGCGCG ATGACGTTCCCCGGCGAGGAAGAGCCGGCGCCTTCGGCCCGCAGCGCGGCAAAACCCGCCGGCAGCCCGAGCGCCGCGGC ATCGCCCTTGACGACGCCGGCGCCGCCAATGCCTAGCCCGTCGCCGACGGCATCGGCCAGCGCCCGCGCTGCCGCAAGCT CGCCCGACGAATAG
Upstream 100 bases:
>100_bases CCGGCACGGCCAGCGCCTATCGTCCGCAGGGTGCGCTGGAACGTGGCGGCAAGCGTGCCGCCGCGACCGGCGACTACGAA GCCTGGTCCCCGGAAGCCTG
Downstream 100 bases:
>100_bases GGTCGCTGCGCCTTCGACAGAAGTTGAAGGTACTGCGATTGCGGGATTTCCACCGCGCCCAGTGAAGCGAGATGCGGGGT GGTGAACTGGCAGTCGAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 217; Mature: 216
Protein sequence:
>217_residues MPLRASPAIPALAVAGALVLAGCGKKEAPPPPEATETGSAVVSASGAAVESEFGTPIKDRVATLGFLNKRNNITQDVVLK SGESRRIGNAIVKLATCEKTAPWEDPPETGAFVQLFVEERATTQEKLAWRKVFSGWLFRNAPSLNVVEHPVYDVWVKDCA MTFPGEEEPAPSARSAAKPAGSPSAAASPLTTPAPPMPSPSPTASASARAAASSPDE
Sequences:
>Translated_217_residues MPLRASPAIPALAVAGALVLAGCGKKEAPPPPEATETGSAVVSASGAAVESEFGTPIKDRVATLGFLNKRNNITQDVVLK SGESRRIGNAIVKLATCEKTAPWEDPPETGAFVQLFVEERATTQEKLAWRKVFSGWLFRNAPSLNVVEHPVYDVWVKDCA MTFPGEEEPAPSARSAAKPAGSPSAAASPLTTPAPPMPSPSPTASASARAAASSPDE >Mature_216_residues PLRASPAIPALAVAGALVLAGCGKKEAPPPPEATETGSAVVSASGAAVESEFGTPIKDRVATLGFLNKRNNITQDVVLKS GESRRIGNAIVKLATCEKTAPWEDPPETGAFVQLFVEERATTQEKLAWRKVFSGWLFRNAPSLNVVEHPVYDVWVKDCAM TFPGEEEPAPSARSAAKPAGSPSAAASPLTTPAPPMPSPSPTASASARAAASSPDE
Specific function: Unknown
COG id: COG4765
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22498; Mature: 22367
Theoretical pI: Translated: 5.37; Mature: 5.37
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLRASPAIPALAVAGALVLAGCGKKEAPPPPEATETGSAVVSASGAAVESEFGTPIKDR CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHCCCCHHHH VATLGFLNKRNNITQDVVLKSGESRRIGNAIVKLATCEKTAPWEDPPETGAFVQLFVEER HHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH ATTQEKLAWRKVFSGWLFRNAPSLNVVEHPVYDVWVKDCAMTFPGEEEPAPSARSAAKPA HHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCC GSPSAAASPLTTPAPPMPSPSPTASASARAAASSPDE CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC >Mature Secondary Structure PLRASPAIPALAVAGALVLAGCGKKEAPPPPEATETGSAVVSASGAAVESEFGTPIKDR CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHCCCCHHHH VATLGFLNKRNNITQDVVLKSGESRRIGNAIVKLATCEKTAPWEDPPETGAFVQLFVEER HHHHHHHHCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH ATTQEKLAWRKVFSGWLFRNAPSLNVVEHPVYDVWVKDCAMTFPGEEEPAPSARSAAKPA HHHHHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCC GSPSAAASPLTTPAPPMPSPSPTASASARAAASSPDE CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA