Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is tyrC [H]
Identifier: 87198720
GI number: 87198720
Start: 735701
End: 736654
Strand: Direct
Name: tyrC [H]
Synonym: Saro_0696
Alternate gene names: 87198720
Gene position: 735701-736654 (Clockwise)
Preceding gene: 87198719
Following gene: 87198726
Centisome position: 20.66
GC content: 68.34
Gene sequence:
>954_bases GTGACGGGCGCTTCGTTCGGACAGGTTACCATCGTGGGCCTGGGCCTGCTTGGCGGGTCGATCGGACATGCGGTGCAGGC TTACCTGCCAGGCACGACGGTAGTTGGCTATGACGCCGATCCCGACGTGCGCGAGGCCGCGCGCGGGCTGGGTCTTGCCC ACCGCATTGCCGACGAAGCGGGCGAAGCGGCGATCGGATCCGACCTCGTGATCTTCTGCGTGCCGGTGGGCGCGATGGGC GCTGCCGCGGCCGCGATAGCGCCCGGCCTGTCGGTCGAAGCGCTGGTGAGCGACGTGGGCTCTTCGAAGGCGACTGTCGC CGCCGCGCTGGCTCAGGCGCTGCCGGGACATCACGTGATTCCCGCCCACCCCGTCGCGGGGACCGAGCGGAGCGGGCCGG AGGCCGGCTTTGCCGCGCTGTTCCGCAACCGCTGGTGCATCATCACTCCGCCCGCAGACGCCGACCCTGTGCTGTTGGCG CGGCTTGTGGCTTTCTGGGAAGCGCTCGGCGCGCGGGTCGAGACGATGGACGCGGACCATCACGACAAGGTCCTTGCGGT CACCAGTCACCTGCCGCACCTTATTGCCTATACCATCGTCGGCACGGCCTCGGACCTCGAGCAGGTGACCCAGAGCGAGG TCATCAAGTACTCGGCCGGCGGCTTCCGCGACTTCACCCGCATCGCCGCTTCGGACCCGACGATGTGGCGCGACGTGTTC CTGACGAACCGCGAAGCGGTGCTGGAGATGCTCCAGCGCTTCACCGAGGACCTGACCGAACTGCAGAAGGCCATCCGCAA GGGCGATGGTGCGTTCCTGTTCGATCACTTCACCCGCACCCGTGCGATCCGCCGTGGCATCATCGAGATGGGCCAGGACG ATGCGCGGCCCGACTTCGGCCGCAGCGACCATAATGGAGACGGCCAGGGAAGCGGCGGCGGGGAACCTGCCTAG
Upstream 100 bases:
>100_bases CGGGGCAGGGCCTGCCCCAGGCGCTGCGCATCACCATAGGCACCGAGGCGCAGATGGACGAGATCGCCGATGCCATCCGC CGGATGTGCGAGGCTGCACG
Downstream 100 bases:
>100_bases ACAGCGATGAACAGCAGGGCGACGAAGGTCATCACGGCCGTCGACGCCCAGCCGCCAAAAGCGAGGCCGCCGGAAATCGT GAGGTCGCCCATGATCTTGC
Product: cyclohexadienyl dehydrogenase
Products: NA
Alternate protein names: Arogenate dehydrogenase; ADH; Cyclohexadienyl dehydrogenase; Prephenate dehydrogenase; PDH [H]
Number of amino acids: Translated: 317; Mature: 316
Protein sequence:
>317_residues MTGASFGQVTIVGLGLLGGSIGHAVQAYLPGTTVVGYDADPDVREAARGLGLAHRIADEAGEAAIGSDLVIFCVPVGAMG AAAAAIAPGLSVEALVSDVGSSKATVAAALAQALPGHHVIPAHPVAGTERSGPEAGFAALFRNRWCIITPPADADPVLLA RLVAFWEALGARVETMDADHHDKVLAVTSHLPHLIAYTIVGTASDLEQVTQSEVIKYSAGGFRDFTRIAASDPTMWRDVF LTNREAVLEMLQRFTEDLTELQKAIRKGDGAFLFDHFTRTRAIRRGIIEMGQDDARPDFGRSDHNGDGQGSGGGEPA
Sequences:
>Translated_317_residues MTGASFGQVTIVGLGLLGGSIGHAVQAYLPGTTVVGYDADPDVREAARGLGLAHRIADEAGEAAIGSDLVIFCVPVGAMG AAAAAIAPGLSVEALVSDVGSSKATVAAALAQALPGHHVIPAHPVAGTERSGPEAGFAALFRNRWCIITPPADADPVLLA RLVAFWEALGARVETMDADHHDKVLAVTSHLPHLIAYTIVGTASDLEQVTQSEVIKYSAGGFRDFTRIAASDPTMWRDVF LTNREAVLEMLQRFTEDLTELQKAIRKGDGAFLFDHFTRTRAIRRGIIEMGQDDARPDFGRSDHNGDGQGSGGGEPA >Mature_316_residues TGASFGQVTIVGLGLLGGSIGHAVQAYLPGTTVVGYDADPDVREAARGLGLAHRIADEAGEAAIGSDLVIFCVPVGAMGA AAAAIAPGLSVEALVSDVGSSKATVAAALAQALPGHHVIPAHPVAGTERSGPEAGFAALFRNRWCIITPPADADPVLLAR LVAFWEALGARVETMDADHHDKVLAVTSHLPHLIAYTIVGTASDLEQVTQSEVIKYSAGGFRDFTRIAASDPTMWRDVFL TNREAVLEMLQRFTEDLTELQKAIRKGDGAFLFDHFTRTRAIRRGIIEMGQDDARPDFGRSDHNGDGQGSGGGEPA
Specific function: Is competent to function as either prephenate dehydrogenase or as arogenate dehydrogenase [H]
COG id: COG0287
COG function: function code E; Prephenate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 prephenate/arogenate dehydrogenase domain [H]
Homologues:
None
Paralogues:
None
Copy number: 500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008927 - InterPro: IPR016040 - InterPro: IPR003099 [H]
Pfam domain/function: PF02153 PDH [H]
EC number: =1.3.1.43; =1.3.1.12 [H]
Molecular weight: Translated: 33183; Mature: 33052
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGASFGQVTIVGLGLLGGSIGHAVQAYLPGTTVVGYDADPDVREAARGLGLAHRIADEA CCCCCCCCEEEEEHHHHCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH GEAAIGSDLVIFCVPVGAMGAAAAAIAPGLSVEALVSDVGSSKATVAAALAQALPGHHVI CCCCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC PAHPVAGTERSGPEAGFAALFRNRWCIITPPADADPVLLARLVAFWEALGARVETMDADH CCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCC HDKVLAVTSHLPHLIAYTIVGTASDLEQVTQSEVIKYSAGGFRDFTRIAASDPTMWRDVF CCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHH LTNREAVLEMLQRFTEDLTELQKAIRKGDGAFLFDHFTRTRAIRRGIIEMGQDDARPDFG HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCC RSDHNGDGQGSGGGEPA CCCCCCCCCCCCCCCCC >Mature Secondary Structure TGASFGQVTIVGLGLLGGSIGHAVQAYLPGTTVVGYDADPDVREAARGLGLAHRIADEA CCCCCCCEEEEEHHHHCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHH GEAAIGSDLVIFCVPVGAMGAAAAAIAPGLSVEALVSDVGSSKATVAAALAQALPGHHVI CCCCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC PAHPVAGTERSGPEAGFAALFRNRWCIITPPADADPVLLARLVAFWEALGARVETMDADH CCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCEEEECCCCC HDKVLAVTSHLPHLIAYTIVGTASDLEQVTQSEVIKYSAGGFRDFTRIAASDPTMWRDVF CCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHH LTNREAVLEMLQRFTEDLTELQKAIRKGDGAFLFDHFTRTRAIRRGIIEMGQDDARPDFG HCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCCCCC RSDHNGDGQGSGGGEPA CCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7916685 [H]