Click here to switch to the map view.

The map label for this gene is ymfO [C]

Identifier: 87198671

GI number: 87198671

Start: 686369

End: 687673

Strand: Direct

Name: ymfO [C]

Synonym: Saro_0647

Alternate gene names: 87198671

Gene position: 686369-687673 (Clockwise)

Preceding gene: 87198670

Following gene: 87198672

Centisome position: 19.27

GC content: 61.92

Gene sequence:

>1305_bases
GTGAGCAGTCTGGCCCCGCGAACGTCCTGGCTCGCGAAGGCGACGACGGCGCTGCGCGACTGGCTGGTGCTCGGACCGGA
TCCGAAGATCCGCGACCCACAGAATTCGTCGCGTGGGGGGAACGGGGCGGGCGTAACCGTCAATGACCAGGCTGCGATGC
GGCTGAGTGCATTCTGGGGCTGCGTCCGCCTCATCTCGTCTACGATCGGCTCGCTACCGGTCCCGGTCTATACCGTCGAC
CAGCGCGGAGTTCGCTCGGTCGCTCGGGAGAGTGCACTGTATCGTGTGTTGCACGATAGCCCGAACGCTGACCAGACGCC
GGTCGATTACATGGAATGCGCCGTCATTTCGCTACTTTTGCGTGGCAACCACTACGCCCGCAAGCTGATGGAAGGTGGCC
GACTGGTTGGCCTCGAGCCGATCAATCCCGCGATCGTCAGCGTCCGCCGGCGTTCCGATGGCAGGATTGGGTATCGTTGG
ACCGAAGGCGGTGAAAACTTCGACCTTACCGAGGATGAAGTTTTTCACGTTCGTGGATTCGGCGGCGGGCCGCTGGGCGG
GCTTTCGACTGTCGAGTTTGCACGTGAATCGCTGGGCGTAGCGATCGCTGCGGACCGCGCCGCGAGCGCGATTTTCGCCA
ACGGGGTGAACCCGACAGGAATCATGTCGACTGATATGCCGCTGACGGCTGCGCAGCAGGCAGAGGCAGAGGAGTTGATC
GTCAAGAAGTACCAGGGAGCGCACCGCATGGGTGTCCCGATGGTGCTTGGCCACGGGTTGAAGTGGAATTCAATCACGAT
GAAGGCCGACGACGCCCAGCTGCTGCAAAGCCGGGGTTGGAGCGTAGAGGAGATTTGCAGGTGGTTCGGCGTTCCGCCGT
TCATGATCGGTCACAACGAGAAGACCACGAGTTGGGGTACCGGCATCGAGCAGATGCTGCTGGGCTTCCAGAAATTTACT
CTCAATCCCTACCTGCGACGCATTGAGCAGGCTGTGCGCAAGCAGCTGATCACTCCGATCGAGCGTGCCCGTGGTCTGAC
CGCCGAATTCAATCTTGAAGGCCTCCTGCGGGCCGACAGCGCGGGTCGCGCATCGTTCTACGACAAGGCGCTCAAGTCGA
AGTGGATGGTCATCAACGAAGTCCGGGCAAAGGAGAACCTTGCGCCGGTGCCGTGGGGCGATGAGCCGATCGTGCAGCAG
CAGGACGTGCCGCTGTCCGATCAGCTCGATGCCCTCCGGGAAGCAATCAAGAACGCCCAGGACGTGGCCGGGCTGTTCCA
GAAGGGAAACGCCAATGCAGCGTAA

Upstream 100 bases:

>100_bases
CGTTCGTGGCGCTGCTCAATGCAGTGAAGCGTATGGAAGAGGGCCCGGTGGCCGTGGCTGGCGGCGTCGATAGCTGGCTC
GCCAGCTTGCGTGGTGCGGC

Downstream 100 bases:

>100_bases
GAGCGGCGGGCTGAAGCTCCGCGATTTTCACCTGAGCGTGAAGGCGCAGGATATCGGCGACGATGGCAGCTTTACCGGGT
ACGGTTCCGTGTTCGGCGTT

Product: Phage portal protein, HK97

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MSSLAPRTSWLAKATTALRDWLVLGPDPKIRDPQNSSRGGNGAGVTVNDQAAMRLSAFWGCVRLISSTIGSLPVPVYTVD
QRGVRSVARESALYRVLHDSPNADQTPVDYMECAVISLLLRGNHYARKLMEGGRLVGLEPINPAIVSVRRRSDGRIGYRW
TEGGENFDLTEDEVFHVRGFGGGPLGGLSTVEFARESLGVAIAADRAASAIFANGVNPTGIMSTDMPLTAAQQAEAEELI
VKKYQGAHRMGVPMVLGHGLKWNSITMKADDAQLLQSRGWSVEEICRWFGVPPFMIGHNEKTTSWGTGIEQMLLGFQKFT
LNPYLRRIEQAVRKQLITPIERARGLTAEFNLEGLLRADSAGRASFYDKALKSKWMVINEVRAKENLAPVPWGDEPIVQQ
QDVPLSDQLDALREAIKNAQDVAGLFQKGNANAA

Sequences:

>Translated_434_residues
MSSLAPRTSWLAKATTALRDWLVLGPDPKIRDPQNSSRGGNGAGVTVNDQAAMRLSAFWGCVRLISSTIGSLPVPVYTVD
QRGVRSVARESALYRVLHDSPNADQTPVDYMECAVISLLLRGNHYARKLMEGGRLVGLEPINPAIVSVRRRSDGRIGYRW
TEGGENFDLTEDEVFHVRGFGGGPLGGLSTVEFARESLGVAIAADRAASAIFANGVNPTGIMSTDMPLTAAQQAEAEELI
VKKYQGAHRMGVPMVLGHGLKWNSITMKADDAQLLQSRGWSVEEICRWFGVPPFMIGHNEKTTSWGTGIEQMLLGFQKFT
LNPYLRRIEQAVRKQLITPIERARGLTAEFNLEGLLRADSAGRASFYDKALKSKWMVINEVRAKENLAPVPWGDEPIVQQ
QDVPLSDQLDALREAIKNAQDVAGLFQKGNANAA
>Mature_433_residues
SSLAPRTSWLAKATTALRDWLVLGPDPKIRDPQNSSRGGNGAGVTVNDQAAMRLSAFWGCVRLISSTIGSLPVPVYTVDQ
RGVRSVARESALYRVLHDSPNADQTPVDYMECAVISLLLRGNHYARKLMEGGRLVGLEPINPAIVSVRRRSDGRIGYRWT
EGGENFDLTEDEVFHVRGFGGGPLGGLSTVEFARESLGVAIAADRAASAIFANGVNPTGIMSTDMPLTAAQQAEAEELIV
KKYQGAHRMGVPMVLGHGLKWNSITMKADDAQLLQSRGWSVEEICRWFGVPPFMIGHNEKTTSWGTGIEQMLLGFQKFTL
NPYLRRIEQAVRKQLITPIERARGLTAEFNLEGLLRADSAGRASFYDKALKSKWMVINEVRAKENLAPVPWGDEPIVQQQ
DVPLSDQLDALREAIKNAQDVAGLFQKGNANAA

Specific function: Unknown

COG id: COG4695

COG function: function code S; Phage-related protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. HK97 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR006427 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 47495; Mature: 47364

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLAPRTSWLAKATTALRDWLVLGPDPKIRDPQNSSRGGNGAGVTVNDQAAMRLSAFWG
CCCCCCHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHH
CVRLISSTIGSLPVPVYTVDQRGVRSVARESALYRVLHDSPNADQTPVDYMECAVISLLL
HHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
RGNHYARKLMEGGRLVGLEPINPAIVSVRRRSDGRIGYRWTEGGENFDLTEDEVFHVRGF
HCCHHHHHHHCCCCEEEECCCCHHHHEEECCCCCCEEEEECCCCCCCCCCCCCEEEEECC
GGGPLGGLSTVEFARESLGVAIAADRAASAIFANGVNPTGIMSTDMPLTAAQQAEAEELI
CCCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHH
VKKYQGAHRMGVPMVLGHGLKWNSITMKADDAQLLQSRGWSVEEICRWFGVPPFMIGHNE
HHHHCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHCCCCHHHHHHHHCCCCEEECCCC
KTTSWGTGIEQMLLGFQKFTLNPYLRRIEQAVRKQLITPIERARGLTAEFNLEGLLRADS
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCC
AGRASFYDKALKSKWMVINEVRAKENLAPVPWGDEPIVQQQDVPLSDQLDALREAIKNAQ
CCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
DVAGLFQKGNANAA
HHHHHHHCCCCCCC
>Mature Secondary Structure 
SSLAPRTSWLAKATTALRDWLVLGPDPKIRDPQNSSRGGNGAGVTVNDQAAMRLSAFWG
CCCCCHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHH
CVRLISSTIGSLPVPVYTVDQRGVRSVARESALYRVLHDSPNADQTPVDYMECAVISLLL
HHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
RGNHYARKLMEGGRLVGLEPINPAIVSVRRRSDGRIGYRWTEGGENFDLTEDEVFHVRGF
HCCHHHHHHHCCCCEEEECCCCHHHHEEECCCCCCEEEEECCCCCCCCCCCCCEEEEECC
GGGPLGGLSTVEFARESLGVAIAADRAASAIFANGVNPTGIMSTDMPLTAAQQAEAEELI
CCCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHH
VKKYQGAHRMGVPMVLGHGLKWNSITMKADDAQLLQSRGWSVEEICRWFGVPPFMIGHNE
HHHHCCCCCCCCHHHHCCCCCCCEEEEECCHHHHHHHCCCCHHHHHHHHCCCCEEECCCC
KTTSWGTGIEQMLLGFQKFTLNPYLRRIEQAVRKQLITPIERARGLTAEFNLEGLLRADS
CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEECCC
AGRASFYDKALKSKWMVINEVRAKENLAPVPWGDEPIVQQQDVPLSDQLDALREAIKNAQ
CCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
DVAGLFQKGNANAA
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA