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The map label for this gene is czcR [H]

Identifier: 87198593

GI number: 87198593

Start: 615911

End: 616783

Strand: Direct

Name: czcR [H]

Synonym: Saro_0569

Alternate gene names: 87198593

Gene position: 615911-616783 (Clockwise)

Preceding gene: 87198587

Following gene: 87198595

Centisome position: 17.29

GC content: 67.35

Gene sequence:

>873_bases
ATGAAGCGCATTGCCCTCTACCATCTTGAAACACTTATGTGGATCGCGCGGCTCGGCACCTTTCGCGCGGCGGCGGAGCG
ACTCAACACTACCCAGCCCGCGATATCTGCCCGCGTCCGCGAGATCGAGGACCAGCTTGGCATCTCGATCTTTCGCAGGG
AAGGCCGAAACATGGTGCTCACCGCACGCGGACGGCGACTGGTGCAGGAATGCGAGCCGCTTTGGGCAGGCTTCGAGAAG
GCGCTGCTCACCGCATCCGGTTTCGAGGGCGCGACCGGCGTGGTGCGCATCGGCAGCGGAGAGATCGCGGCGGCCTCATG
CCTTCCGGGGTTCGTCAACACGGTCGAACGCGATCTGCCCGGCGTCACTCTCGAACTGGAACTCGATCTTACCGCGCGCA
TGTTCCAGCAACTGCTGGGCGGGACGATCGACCTTGCCTTTCTTGCCGGACCCGTCGCCAGCCCCGGCATAAGGACCGCG
CCGATCGGGTCGGTGGGGCTGGTCTGGGCGGCCAGCAGCGCCACGGCGGCGGCGGGCGGATTTGCCCGGCCGCTGCCGGT
ATGGTCGATTCCCGATCATTCGCCGCTGCACGGCGTGACTGTGGAATCGCTCGCAGCCAACGGCGTTGCGCCGCGCTCCA
TCGCAACCTGCAACAACGTGCGCACGCTGATCGAGATCGTCATTGGCGGCGGCGGCGCGGCGGTCTTTCCCGAACCGATG
GTCCGGGCGGAGCTGGAGGCCGGTCGGCTGGTGGAAGTCCTGCCGCGCCCCGGCCGCACGGTGCGGTTCGAAGCCGCGAT
CCGCAGCACCGAAAGCGATCCCCTCGTGCTCGAACTGTTCCGCCGCGCCGGAGATCTGCGGATCGACGGCTAG

Upstream 100 bases:

>100_bases
CGACATTCAGGACTCTCCCTTTCGGAGGCGCTGGTAGCACAGGACATAAATCGAAAAGAGCGATTGTTTTTTATCGTAAT
CGATAACAAGCTCTGATCGG

Downstream 100 bases:

>100_bases
CCCCTGTTCGCTCGGCTTCGCGCCAGAAGGCCTTCAGCCAGAAGGCCTTCAGAAAGCCAGCCCGAGCACTGCGCCAAGAT
CGGCCAGCGCCTGATCCCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MKRIALYHLETLMWIARLGTFRAAAERLNTTQPAISARVREIEDQLGISIFRREGRNMVLTARGRRLVQECEPLWAGFEK
ALLTASGFEGATGVVRIGSGEIAAASCLPGFVNTVERDLPGVTLELELDLTARMFQQLLGGTIDLAFLAGPVASPGIRTA
PIGSVGLVWAASSATAAAGGFARPLPVWSIPDHSPLHGVTVESLAANGVAPRSIATCNNVRTLIEIVIGGGGAAVFPEPM
VRAELEAGRLVEVLPRPGRTVRFEAAIRSTESDPLVLELFRRAGDLRIDG

Sequences:

>Translated_290_residues
MKRIALYHLETLMWIARLGTFRAAAERLNTTQPAISARVREIEDQLGISIFRREGRNMVLTARGRRLVQECEPLWAGFEK
ALLTASGFEGATGVVRIGSGEIAAASCLPGFVNTVERDLPGVTLELELDLTARMFQQLLGGTIDLAFLAGPVASPGIRTA
PIGSVGLVWAASSATAAAGGFARPLPVWSIPDHSPLHGVTVESLAANGVAPRSIATCNNVRTLIEIVIGGGGAAVFPEPM
VRAELEAGRLVEVLPRPGRTVRFEAAIRSTESDPLVLELFRRAGDLRIDG
>Mature_290_residues
MKRIALYHLETLMWIARLGTFRAAAERLNTTQPAISARVREIEDQLGISIFRREGRNMVLTARGRRLVQECEPLWAGFEK
ALLTASGFEGATGVVRIGSGEIAAASCLPGFVNTVERDLPGVTLELELDLTARMFQQLLGGTIDLAFLAGPVASPGIRTA
PIGSVGLVWAASSATAAAGGFARPLPVWSIPDHSPLHGVTVESLAANGVAPRSIATCNNVRTLIEIVIGGGGAAVFPEPM
VRAELEAGRLVEVLPRPGRTVRFEAAIRSTESDPLVLELFRRAGDLRIDG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=270, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1789639, Length=273, Percent_Identity=26.007326007326, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787806, Length=261, Percent_Identity=23.3716475095785, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788887, Length=154, Percent_Identity=27.9220779220779, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788626, Length=250, Percent_Identity=25.2, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787589, Length=278, Percent_Identity=25.8992805755396, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789173, Length=254, Percent_Identity=24.4094488188976, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1790262, Length=291, Percent_Identity=26.1168384879725, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30879; Mature: 30879

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIALYHLETLMWIARLGTFRAAAERLNTTQPAISARVREIEDQLGISIFRREGRNMVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHCCCCEEE
TARGRRLVQECEPLWAGFEKALLTASGFEGATGVVRIGSGEIAAASCLPGFVNTVERDLP
EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEHHHHCHHHHHHHHHCCC
GVTLELELDLTARMFQQLLGGTIDLAFLAGPVASPGIRTAPIGSVGLVWAASSATAAAGG
CEEEEEEECHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
FARPLPVWSIPDHSPLHGVTVESLAANGVAPRSIATCNNVRTLIEIVIGGGGAAVFPEPM
CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCHH
VRAELEAGRLVEVLPRPGRTVRFEAAIRSTESDPLVLELFRRAGDLRIDG
HHHHHCCCCEEEECCCCCCEEEEEEEHHCCCCCHHHHHHHHHCCCEEECC
>Mature Secondary Structure
MKRIALYHLETLMWIARLGTFRAAAERLNTTQPAISARVREIEDQLGISIFRREGRNMVL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHCCCCEEE
TARGRRLVQECEPLWAGFEKALLTASGFEGATGVVRIGSGEIAAASCLPGFVNTVERDLP
EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEHHHHCHHHHHHHHHCCC
GVTLELELDLTARMFQQLLGGTIDLAFLAGPVASPGIRTAPIGSVGLVWAASSATAAAGG
CEEEEEEECHHHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
FARPLPVWSIPDHSPLHGVTVESLAANGVAPRSIATCNNVRTLIEIVIGGGGAAVFPEPM
CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCHH
VRAELEAGRLVEVLPRPGRTVRFEAAIRSTESDPLVLELFRRAGDLRIDG
HHHHHCCCCEEEECCCCCCEEEEEEEHHCCCCCHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA