Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198595
Identifier: 87198595
GI number: 87198595
Start: 617619
End: 618398
Strand: Direct
Name: 87198595
Synonym: Saro_0571
Alternate gene names: NA
Gene position: 617619-618398 (Clockwise)
Preceding gene: 87198593
Following gene: 87198596
Centisome position: 17.34
GC content: 66.79
Gene sequence:
>780_bases ATGCGCTCCATTCTTTGTCCGGTCGATGCATCCGAAACCCTCGATGACCGGGTCGAAACGGCCTTGGCGCTCGCCCGCGC GACGAAGGGCCACGTCACCTTCCAGATTTCGACCCCGTTCGCGCAGATGGCCGTATGGGAACCGTTCGGCGGCGCCACGA TTTCGGCCGCCGCGATTGCCGATGCGCGCGAGGGGGACGAAAAGCTCCAGCGCCAGCTCGACGCGCGCATGGCCTCGCAG GACGTGCCGTTCGATGTGACCATCGAGGATTCGGGTCATGTCGAGGCCGCCGCCGCCGCCGCACGCTTTGCCGATATCGT GGTCGATACGCTCGACCATCCCTCGCTCGAGGAACTGGTTCTCGGGCTGCGCAGCCCGGTCCTCGCGGTGCCGCGGGGCG TGCCGATGCTCACCTTCGATGCCCCGGTGCTGGTGGCATGGGACGGCGGACACGAATCGGCCAATGCCCTGCGCGCGTCG TTGCCGTTCCTGCGCATGGCCAGCGCGGTCCACCTCGTGACCGTGCGCGAGAAGGCCGATACCTTCCCCGCCTCCGAGGC TGCCTGCTACCTTTCCCGCCATGATCTCCATGCCGAGGTCCACGAAAGGGAGCGCAACGGTTCAATCGCGTTTACCCTCG AGGAATGCGCGCGCGAGGTGGGGGCAGGGCTGATCGTCATGGGTCTGTTCGGCCACAGCCGCCTGCGCGAACTGCTGGTT GGCGGGGTGTCGCGTGAAATGCTCGATCGGTCGCAGATCCCGCTGCTCCTGGCTCACTGA
Upstream 100 bases:
>100_bases GAAATCCGGCAACCTACCAATATGCCGGGAATTTGACGTGGATCATGGTGAGGCGCACTGTCCTGCGGGAGGGATAGGGA GCTGAAAACAGGAGGATCCC
Downstream 100 bases:
>100_bases GGCTTGGCTGCGGCGCCGGCGCGGGCAAGGGCGAGGGGATGAAGATCCTCTTCCCGTCCCTCGCGCTCGTGCTGCTCGCC GCCTGCTCGCAGCCTTCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: UspA Domain Protein; Universal Stress Protein UspA; Universal Stress Protein; Universal Stress Protein Family Protein; Universal Stress Protein Family; Universal Stress UspA Protein; Universal Stress Family Protein; Universal Stress Protein UspA Family UspA; UspA Stress Protein; Universal Stress Protein UspA Family; Universal Stress Response Protein; Universal Stress Protein Family Domain Protein; Universal Stress Protein UspA-Like; Universal Stress Related Protein
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MRSILCPVDASETLDDRVETALALARATKGHVTFQISTPFAQMAVWEPFGGATISAAAIADAREGDEKLQRQLDARMASQ DVPFDVTIEDSGHVEAAAAAARFADIVVDTLDHPSLEELVLGLRSPVLAVPRGVPMLTFDAPVLVAWDGGHESANALRAS LPFLRMASAVHLVTVREKADTFPASEAACYLSRHDLHAEVHERERNGSIAFTLEECAREVGAGLIVMGLFGHSRLRELLV GGVSREMLDRSQIPLLLAH
Sequences:
>Translated_259_residues MRSILCPVDASETLDDRVETALALARATKGHVTFQISTPFAQMAVWEPFGGATISAAAIADAREGDEKLQRQLDARMASQ DVPFDVTIEDSGHVEAAAAAARFADIVVDTLDHPSLEELVLGLRSPVLAVPRGVPMLTFDAPVLVAWDGGHESANALRAS LPFLRMASAVHLVTVREKADTFPASEAACYLSRHDLHAEVHERERNGSIAFTLEECAREVGAGLIVMGLFGHSRLRELLV GGVSREMLDRSQIPLLLAH >Mature_259_residues MRSILCPVDASETLDDRVETALALARATKGHVTFQISTPFAQMAVWEPFGGATISAAAIADAREGDEKLQRQLDARMASQ DVPFDVTIEDSGHVEAAAAAARFADIVVDTLDHPSLEELVLGLRSPVLAVPRGVPMLTFDAPVLVAWDGGHESANALRAS LPFLRMASAVHLVTVREKADTFPASEAACYLSRHDLHAEVHERERNGSIAFTLEECAREVGAGLIVMGLFGHSRLRELLV GGVSREMLDRSQIPLLLAH
Specific function: Unknown
COG id: COG0589
COG function: function code T; Universal stress protein UspA and related nucleotide-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27906; Mature: 27906
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSILCPVDASETLDDRVETALALARATKGHVTFQISTPFAQMAVWEPFGGATISAAAIA CCCEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHEEECCCCCCEEHHHHHH DAREGDEKLQRQLDARMASQDVPFDVTIEDSGHVEAAAAAARFADIVVDTLDHPSLEELV HCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH LGLRSPVLAVPRGVPMLTFDAPVLVAWDGGHESANALRASLPFLRMASAVHLVTVREKAD HHHCCCCEECCCCCEEEEECCCEEEEECCCCCHHHHHHHHCHHHHHHHHHEEEEEECCCC TFPASEAACYLSRHDLHAEVHERERNGSIAFTLEECAREVGAGLIVMGLFGHSRLRELLV CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCEEEEEHHCHHHHHHHHH GGVSREMLDRSQIPLLLAH CCHHHHHHHHCCCCEEEEC >Mature Secondary Structure MRSILCPVDASETLDDRVETALALARATKGHVTFQISTPFAQMAVWEPFGGATISAAAIA CCCEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHEEECCCCCCEEHHHHHH DAREGDEKLQRQLDARMASQDVPFDVTIEDSGHVEAAAAAARFADIVVDTLDHPSLEELV HCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHH LGLRSPVLAVPRGVPMLTFDAPVLVAWDGGHESANALRASLPFLRMASAVHLVTVREKAD HHHCCCCEECCCCCEEEEECCCEEEEECCCCCHHHHHHHHCHHHHHHHHHEEEEEECCCC TFPASEAACYLSRHDLHAEVHERERNGSIAFTLEECAREVGAGLIVMGLFGHSRLRELLV CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHCCCEEEEEHHCHHHHHHHHH GGVSREMLDRSQIPLLLAH CCHHHHHHHHCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA