Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is pyk [H]
Identifier: 87198457
GI number: 87198457
Start: 469798
End: 471252
Strand: Direct
Name: pyk [H]
Synonym: Saro_0432
Alternate gene names: 87198457
Gene position: 469798-471252 (Clockwise)
Preceding gene: 87198452
Following gene: 87198459
Centisome position: 13.19
GC content: 67.49
Gene sequence:
>1455_bases GTGGCCAAGCTCGATCCTCGCGGACGCAAGGTAAAGATCCTCGCCACGGTCGGCCCTGCCAGCCGCGATCCGGAAATGCT CGAAAAGCTGTTCCGCGCCGGCGCCGACGCCTTCCGCGTCAACATGAGCCACGGCGAACACGCGATTCACGCCGAGACCA TCGCCAACATCCGCGCGCTGGAAAAGAAGGTGAACCGGCCGATCACGATCCTGTGCGACCTGCAGGGGCCCAAGCTTCGC GTCGGCAAGTTCAAGGACGGCCGCGCGGTCATCCGCCATTCGGGCCACTTCACGCTCGATCGCAATCCCGAGCCGGGCGA TGAAACCCGCGTCTGCCTGCCGCATCCCGAACTGTTCGGCGTTCTTCACAAGGGCCAGCGCCTGCTGATCGACGACGGCA AGCTGCGGCTGCGGGTGATCCGCGCCGACGAGAACGAGATCCTCTGTTCGGCCGAAGTCGGCGGCGTCATTTCCGATCGC AAGGGCGTCAACGTTCCCGATGCGGTGGTGCCCGTTCCCGCGCTGACCGACAAGGATCGGCGCGACCTGTCGTTCGCGGT TGAGCAGGGGGCGGACTGGATCGCGCTGTCGTTCGTCCAGCGGCCCGAGGACGTGGCCGAGGCGCGGCGCCTGCTGGGCG GCCACGGCTCGCTCATGGCCAAGATCGAAAAGCCGGCGGCGATTTCCCGGCTTGAAGAGATCGTCGAGCTTTCGGACGGC ATCATGGTCGCCCGCGGCGACCTTGGCGTCGAGCTGAACCCTGAAGAGGTGCCGCCGCTCCAGAAGCGCATCGTCGAAAC CGCGCGCCGCCAGGGCAAGCCGGTGGTCGTCGCCACGCAGATGCTCGAATCGATGATCGAAGCGCCGACGCCGACCCGCG CCGAAGTTTCGGACGTCGCCAATGCGGTCTATGACGGCGCCGACGCGGTGATGCTCTCGGCCGAAACCGCCGCCGGTGCC TGGCCGGAAGAGGCGGTCACCATCATGCACCGCATCGCCGCGCAGGTCGAAGCCGATCCGGGCTATGGCGCGCGCGTCCA CTTCTTAGAGACGCTTCCCGATCCGACCACCGCCGACGCCCTTGCGCAGGCTGCGGCGAGCATCACCGAGACCTTGCCGA TTTCCGGGATCATCGTGTTTACCGGATCGGGTTCCACCGCTCGCCGCGTGGCGCGCGAACGTCCCGGCGTGCCGATGCTC GTGCTCACGCCTTCGCACAAGACGGCGCGCAAGGTCGGGCTGCTGTGGGGCGCCCATGCCGTCAGCACCAAGGACATCGG CAGCTTCGAGGAGATGATCGCCAAGGGCAAGCGCATGGCGCTGCGCCACGGCTTCGGCTCGGCCGGATCCAAGCTCGTCG CGCTGGCGGGTGTTCCGTTCGGCACGCCGGGGGCGACCAACCTGCTCCACGTGGTGACGCTTACCGGCGACGAACTCACC CGCCACGGCGAATGA
Upstream 100 bases:
>100_bases AGTTCATCGATTGCATTCGTATCCACTGTAAACGTCCTTGGGTTTTGCACGGCCATCGGCCATAGCGCGTTTCGCCGGAA TGATAAGGAGTACCAAAGCC
Downstream 100 bases:
>100_bases GGCGACGATAGACGGCCGGTCGCGCGTCAGCGCGTGCCGGTCCCTGTCGGTCGGGCTCAGCGCTCTCCGAACAGTGCGGA GCCGACGCGCACATGCGTCG
Product: pyruvate kinase
Products: NA
Alternate protein names: PK [H]
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MAKLDPRGRKVKILATVGPASRDPEMLEKLFRAGADAFRVNMSHGEHAIHAETIANIRALEKKVNRPITILCDLQGPKLR VGKFKDGRAVIRHSGHFTLDRNPEPGDETRVCLPHPELFGVLHKGQRLLIDDGKLRLRVIRADENEILCSAEVGGVISDR KGVNVPDAVVPVPALTDKDRRDLSFAVEQGADWIALSFVQRPEDVAEARRLLGGHGSLMAKIEKPAAISRLEEIVELSDG IMVARGDLGVELNPEEVPPLQKRIVETARRQGKPVVVATQMLESMIEAPTPTRAEVSDVANAVYDGADAVMLSAETAAGA WPEEAVTIMHRIAAQVEADPGYGARVHFLETLPDPTTADALAQAAASITETLPISGIIVFTGSGSTARRVARERPGVPML VLTPSHKTARKVGLLWGAHAVSTKDIGSFEEMIAKGKRMALRHGFGSAGSKLVALAGVPFGTPGATNLLHVVTLTGDELT RHGE
Sequences:
>Translated_484_residues MAKLDPRGRKVKILATVGPASRDPEMLEKLFRAGADAFRVNMSHGEHAIHAETIANIRALEKKVNRPITILCDLQGPKLR VGKFKDGRAVIRHSGHFTLDRNPEPGDETRVCLPHPELFGVLHKGQRLLIDDGKLRLRVIRADENEILCSAEVGGVISDR KGVNVPDAVVPVPALTDKDRRDLSFAVEQGADWIALSFVQRPEDVAEARRLLGGHGSLMAKIEKPAAISRLEEIVELSDG IMVARGDLGVELNPEEVPPLQKRIVETARRQGKPVVVATQMLESMIEAPTPTRAEVSDVANAVYDGADAVMLSAETAAGA WPEEAVTIMHRIAAQVEADPGYGARVHFLETLPDPTTADALAQAAASITETLPISGIIVFTGSGSTARRVARERPGVPML VLTPSHKTARKVGLLWGAHAVSTKDIGSFEEMIAKGKRMALRHGFGSAGSKLVALAGVPFGTPGATNLLHVVTLTGDELT RHGE >Mature_483_residues AKLDPRGRKVKILATVGPASRDPEMLEKLFRAGADAFRVNMSHGEHAIHAETIANIRALEKKVNRPITILCDLQGPKLRV GKFKDGRAVIRHSGHFTLDRNPEPGDETRVCLPHPELFGVLHKGQRLLIDDGKLRLRVIRADENEILCSAEVGGVISDRK GVNVPDAVVPVPALTDKDRRDLSFAVEQGADWIALSFVQRPEDVAEARRLLGGHGSLMAKIEKPAAISRLEEIVELSDGI MVARGDLGVELNPEEVPPLQKRIVETARRQGKPVVVATQMLESMIEAPTPTRAEVSDVANAVYDGADAVMLSAETAAGAW PEEAVTIMHRIAAQVEADPGYGARVHFLETLPDPTTADALAQAAASITETLPISGIIVFTGSGSTARRVARERPGVPMLV LTPSHKTARKVGLLWGAHAVSTKDIGSFEEMIAKGKRMALRHGFGSAGSKLVALAGVPFGTPGATNLLHVVTLTGDELTR HGE
Specific function: Glycolysis; final step. [C]
COG id: COG0469
COG function: function code G; Pyruvate kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pyruvate kinase family [H]
Homologues:
Organism=Homo sapiens, GI33286418, Length=490, Percent_Identity=40, Blast_Score=301, Evalue=8e-82, Organism=Homo sapiens, GI33286422, Length=487, Percent_Identity=38.6036960985626, Blast_Score=297, Evalue=2e-80, Organism=Homo sapiens, GI33286420, Length=487, Percent_Identity=38.6036960985626, Blast_Score=297, Evalue=2e-80, Organism=Homo sapiens, GI10835121, Length=495, Percent_Identity=38.3838383838384, Blast_Score=289, Evalue=4e-78, Organism=Homo sapiens, GI32967597, Length=495, Percent_Identity=38.3838383838384, Blast_Score=289, Evalue=4e-78, Organism=Homo sapiens, GI310128732, Length=287, Percent_Identity=38.3275261324042, Blast_Score=190, Evalue=3e-48, Organism=Homo sapiens, GI310128730, Length=287, Percent_Identity=38.3275261324042, Blast_Score=190, Evalue=3e-48, Organism=Homo sapiens, GI310128736, Length=237, Percent_Identity=35.0210970464135, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI310128734, Length=237, Percent_Identity=35.0210970464135, Blast_Score=144, Evalue=2e-34, Organism=Homo sapiens, GI310128738, Length=209, Percent_Identity=34.4497607655502, Blast_Score=122, Evalue=7e-28, Organism=Escherichia coli, GI1787965, Length=473, Percent_Identity=38.4778012684989, Blast_Score=306, Evalue=1e-84, Organism=Escherichia coli, GI1788160, Length=477, Percent_Identity=36.0587002096436, Blast_Score=274, Evalue=7e-75, Organism=Caenorhabditis elegans, GI17544584, Length=488, Percent_Identity=38.1147540983607, Blast_Score=304, Evalue=8e-83, Organism=Caenorhabditis elegans, GI71984406, Length=502, Percent_Identity=38.0478087649402, Blast_Score=275, Evalue=4e-74, Organism=Caenorhabditis elegans, GI71984413, Length=502, Percent_Identity=38.0478087649402, Blast_Score=275, Evalue=5e-74, Organism=Caenorhabditis elegans, GI17506829, Length=502, Percent_Identity=38.0478087649402, Blast_Score=275, Evalue=6e-74, Organism=Caenorhabditis elegans, GI17506831, Length=502, Percent_Identity=38.0478087649402, Blast_Score=274, Evalue=9e-74, Organism=Saccharomyces cerevisiae, GI6319279, Length=486, Percent_Identity=35.3909465020576, Blast_Score=258, Evalue=1e-69, Organism=Saccharomyces cerevisiae, GI6324923, Length=486, Percent_Identity=33.9506172839506, Blast_Score=256, Evalue=5e-69, Organism=Drosophila melanogaster, GI24648964, Length=493, Percent_Identity=37.3225152129817, Blast_Score=281, Evalue=5e-76, Organism=Drosophila melanogaster, GI28571814, Length=493, Percent_Identity=37.3225152129817, Blast_Score=281, Evalue=7e-76, Organism=Drosophila melanogaster, GI24648966, Length=412, Percent_Identity=37.378640776699, Blast_Score=249, Evalue=4e-66, Organism=Drosophila melanogaster, GI24581235, Length=428, Percent_Identity=32.2429906542056, Blast_Score=233, Evalue=2e-61, Organism=Drosophila melanogaster, GI24646914, Length=334, Percent_Identity=35.0299401197605, Blast_Score=174, Evalue=2e-43,
Paralogues:
None
Copy number: 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 124 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001697 - InterPro: IPR015813 - InterPro: IPR011037 - InterPro: IPR015794 - InterPro: IPR018209 - InterPro: IPR015793 - InterPro: IPR015795 - InterPro: IPR015806 [H]
Pfam domain/function: PF00224 PK; PF02887 PK_C [H]
EC number: =2.7.1.40 [H]
Molecular weight: Translated: 51960; Mature: 51829
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKLDPRGRKVKILATVGPASRDPEMLEKLFRAGADAFRVNMSHGEHAIHAETIANIRAL CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHH EKKVNRPITILCDLQGPKLRVGKFKDGRAVIRHSGHFTLDRNPEPGDETRVCLPHPELFG HHHHCCCEEEEEECCCCEEEECCCCCCCEEEEECCEEEECCCCCCCCCCEEECCCHHHHH VLHKGQRLLIDDGKLRLRVIRADENEILCSAEVGGVISDRKGVNVPDAVVPVPALTDKDR HHHCCCEEEEECCCEEEEEEEECCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCC RDLSFAVEQGADWIALSFVQRPEDVAEARRLLGGHGSLMAKIEKPAAISRLEEIVELSDG HHHHHHHHCCCCEEEEHHHHCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCC IMVARGDLGVELNPEEVPPLQKRIVETARRQGKPVVVATQMLESMIEAPTPTRAEVSDVA EEEEECCCCCEECCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCHHHHHHH NAVYDGADAVMLSAETAAGAWPEEAVTIMHRIAAQVEADPGYGARVHFLETLPDPTTADA HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCHHHH LAQAAASITETLPISGIIVFTGSGSTARRVARERPGVPMLVLTPSHKTARKVGLLWGAHA HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHEECCCC VSTKDIGSFEEMIAKGKRMALRHGFGSAGSKLVALAGVPFGTPGATNLLHVVTLTGDELT CCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCHHH RHGE CCCC >Mature Secondary Structure AKLDPRGRKVKILATVGPASRDPEMLEKLFRAGADAFRVNMSHGEHAIHAETIANIRAL CCCCCCCCEEEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCEEHHHHHHHHHHH EKKVNRPITILCDLQGPKLRVGKFKDGRAVIRHSGHFTLDRNPEPGDETRVCLPHPELFG HHHHCCCEEEEEECCCCEEEECCCCCCCEEEEECCEEEECCCCCCCCCCEEECCCHHHHH VLHKGQRLLIDDGKLRLRVIRADENEILCSAEVGGVISDRKGVNVPDAVVPVPALTDKDR HHHCCCEEEEECCCEEEEEEEECCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCC RDLSFAVEQGADWIALSFVQRPEDVAEARRLLGGHGSLMAKIEKPAAISRLEEIVELSDG HHHHHHHHCCCCEEEEHHHHCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCC IMVARGDLGVELNPEEVPPLQKRIVETARRQGKPVVVATQMLESMIEAPTPTRAEVSDVA EEEEECCCCCEECCCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCHHHHHHH NAVYDGADAVMLSAETAAGAWPEEAVTIMHRIAAQVEADPGYGARVHFLETLPDPTTADA HHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHEECCCCCCCEEEEEECCCCCCHHHH LAQAAASITETLPISGIIVFTGSGSTARRVARERPGVPMLVLTPSHKTARKVGLLWGAHA HHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCEEEEECCCCHHHHHHHHEECCCC VSTKDIGSFEEMIAKGKRMALRHGFGSAGSKLVALAGVPFGTPGATNLLHVVTLTGDELT CCCCCCCHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCHHH RHGE CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA