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The map label for this gene is ycbB [H]

Identifier: 87198452

GI number: 87198452

Start: 466174

End: 467673

Strand: Direct

Name: ycbB [H]

Synonym: Saro_0427

Alternate gene names: 87198452

Gene position: 466174-467673 (Clockwise)

Preceding gene: 87198449

Following gene: 87198457

Centisome position: 13.09

GC content: 66.67

Gene sequence:

>1500_bases
ATGACGGCTCCCGCAGCCAAAATGCGAGTGAACGGGGAAGTGCGAAAAGTGAAGCGTGCGAATCTCGGGGCCGGCCTTTC
CGGCATGCTTGGCGTGGCTGTCGTGGCGCTGACCTTTGCTTCCCAACCACTCGCGGCGAAGGCCGGAACTCAGGCGGGAT
CTCAGGCCGGCACTCAGGCCGGCACTCAGGCCGGCACTCAGGCCGGTCCGGTTGACCTGACCAAGCAGGCCAAGCCTGCG
CCGGTCGTTGCTCCGACGGCAACGCCGACTGCGGCCCCCGCTGCATCACCCACAGTATCGCCCACTGCCGCGCCGGTCGA
AGCGCCGACGCCTGTGCCTGCGCCGCACTGGACGCAGAGCGATGCGCAAGGCCTGCTCGCCATGATCAAGGGCATCGGCG
CCGAAGGGCTGTTCCCCAGGGACTACCAGCCCGAGGCATTGTCGGCCGCGATCCTGAAGGGCGAAGGGCCCGAACTCGAC
GAGACGGCAACGCGCCTGTTCACCTGGCTGGCCGAGGACCTGCGCGATGGCCGCACACCGATGACGGCGCGCGTGCAGTG
GTTCGCGGTCGACCCCGACCAGGACGTCCACCCGACCTCGCTGATCCTTGCTGATGCCCTTGCAAGGCACGACGTGAAGG
GCGCGCTCATGGCACTGCTGCCAACGGTGCCGGACTATGCCGCGCTCAAGGCCGCGCTGCCCAAGGCGCAGACCCAGAAG
CAGGCCGCGCTGATCCGCGCCAACATGGATCGCTGGCGCTGGCTGGCGCGCGACCTGGGCACGCAGTACCTGCTGGCCAA
CGTCCCCGAGCAGGTGCTCCGCCTGACGGTGCGCAACAAGATCATCAGCACCTACAAGGTCATCGTTGGCAAGCCCGGCA
AGACTGCGACCCCGCAGCTGGCCGAGACGGTGGAAGGCGTGATCTTCAATCCCACATGGACCGTGCCGCAGTCGATCGTC
GTCGGCGAAGGGCTGGGCGCACGTCTGGTCAACAACCCGCGTCAGGCCGAGCGCGAGGGCTACAAGGTGACCAAGGCGGG
GGATGGCACGATCTATGTCGTCCAGCAGCCGGGCGACAACAACTCGCTGGGCCGGATGAAGCTCGACATGCCCAACGAGC
ACGCGATCTTCCTGCACGATACGCCCAACCGCAACCTGTTCAACCTGCCCGCCCGCGCGCTCAGCCACGGTTGCGTGCGC
GTGGAGCGGGCGACCGAGCTGGCCATGACAATGGCGATCCTCGGGGCCGGGATGACTCCCGACGATGCCGTCGCCGCGCA
TACCTCGAAGGTCTATACCAAGGTGCCGATGACCAAGACATTCCCGGTCTATCTCACCTACTTCACCGTCGCGCGCGACG
TGAACGGAATGCTGCGGTCCTTCCCGGACATCTACAACCGCGACGCGCCGGTGCTCGCCACCTTCGCCCAGCCCCGCCAG
CTCCACACGACCCAGCGCAAGAGCAACGAGGAAGTCATCAAGCTCGACAATCCGCTCTAG

Upstream 100 bases:

>100_bases
TTGTGTCCCGCGGCCGGGGATTCGGACTTCAGGGTGATTCAGCCTTCAGACAGGCGCGGCGCTTGATAGTGATCGGGGCT
TGGGGCAGGACATCTTTGAA

Downstream 100 bases:

>100_bases
GCCAAGCATGCGGACCCGCGAGAGCGTCTGTCGCCGCAAGGTGCGCTATGCCTCGCGCGGGGAGGCGATGGAGGCCGCGA
CTGCCAGCGGCCTCATCCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 499; Mature: 498

Protein sequence:

>499_residues
MTAPAAKMRVNGEVRKVKRANLGAGLSGMLGVAVVALTFASQPLAAKAGTQAGSQAGTQAGTQAGTQAGPVDLTKQAKPA
PVVAPTATPTAAPAASPTVSPTAAPVEAPTPVPAPHWTQSDAQGLLAMIKGIGAEGLFPRDYQPEALSAAILKGEGPELD
ETATRLFTWLAEDLRDGRTPMTARVQWFAVDPDQDVHPTSLILADALARHDVKGALMALLPTVPDYAALKAALPKAQTQK
QAALIRANMDRWRWLARDLGTQYLLANVPEQVLRLTVRNKIISTYKVIVGKPGKTATPQLAETVEGVIFNPTWTVPQSIV
VGEGLGARLVNNPRQAEREGYKVTKAGDGTIYVVQQPGDNNSLGRMKLDMPNEHAIFLHDTPNRNLFNLPARALSHGCVR
VERATELAMTMAILGAGMTPDDAVAAHTSKVYTKVPMTKTFPVYLTYFTVARDVNGMLRSFPDIYNRDAPVLATFAQPRQ
LHTTQRKSNEEVIKLDNPL

Sequences:

>Translated_499_residues
MTAPAAKMRVNGEVRKVKRANLGAGLSGMLGVAVVALTFASQPLAAKAGTQAGSQAGTQAGTQAGTQAGPVDLTKQAKPA
PVVAPTATPTAAPAASPTVSPTAAPVEAPTPVPAPHWTQSDAQGLLAMIKGIGAEGLFPRDYQPEALSAAILKGEGPELD
ETATRLFTWLAEDLRDGRTPMTARVQWFAVDPDQDVHPTSLILADALARHDVKGALMALLPTVPDYAALKAALPKAQTQK
QAALIRANMDRWRWLARDLGTQYLLANVPEQVLRLTVRNKIISTYKVIVGKPGKTATPQLAETVEGVIFNPTWTVPQSIV
VGEGLGARLVNNPRQAEREGYKVTKAGDGTIYVVQQPGDNNSLGRMKLDMPNEHAIFLHDTPNRNLFNLPARALSHGCVR
VERATELAMTMAILGAGMTPDDAVAAHTSKVYTKVPMTKTFPVYLTYFTVARDVNGMLRSFPDIYNRDAPVLATFAQPRQ
LHTTQRKSNEEVIKLDNPL
>Mature_498_residues
TAPAAKMRVNGEVRKVKRANLGAGLSGMLGVAVVALTFASQPLAAKAGTQAGSQAGTQAGTQAGTQAGPVDLTKQAKPAP
VVAPTATPTAAPAASPTVSPTAAPVEAPTPVPAPHWTQSDAQGLLAMIKGIGAEGLFPRDYQPEALSAAILKGEGPELDE
TATRLFTWLAEDLRDGRTPMTARVQWFAVDPDQDVHPTSLILADALARHDVKGALMALLPTVPDYAALKAALPKAQTQKQ
AALIRANMDRWRWLARDLGTQYLLANVPEQVLRLTVRNKIISTYKVIVGKPGKTATPQLAETVEGVIFNPTWTVPQSIVV
GEGLGARLVNNPRQAEREGYKVTKAGDGTIYVVQQPGDNNSLGRMKLDMPNEHAIFLHDTPNRNLFNLPARALSHGCVRV
ERATELAMTMAILGAGMTPDDAVAAHTSKVYTKVPMTKTFPVYLTYFTVARDVNGMLRSFPDIYNRDAPVLATFAQPRQL
HTTQRKSNEEVIKLDNPL

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=250, Percent_Identity=32.8, Blast_Score=122, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 53378; Mature: 53247

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPAAKMRVNGEVRKVKRANLGAGLSGMLGVAVVALTFASQPLAAKAGTQAGSQAGTQA
CCCCCCCEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHCCHH
GTQAGTQAGPVDLTKQAKPAPVVAPTATPTAAPAASPTVSPTAAPVEAPTPVPAPHWTQS
CHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
DAQGLLAMIKGIGAEGLFPRDYQPEALSAAILKGEGPELDETATRLFTWLAEDLRDGRTP
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
MTARVQWFAVDPDQDVHPTSLILADALARHDVKGALMALLPTVPDYAALKAALPKAQTQK
CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHH
QAALIRANMDRWRWLARDLGTQYLLANVPEQVLRLTVRNKIISTYKVIVGKPGKTATPQL
HHHHHHHCHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHH
AETVEGVIFNPTWTVPQSIVVGEGLGARLVNNPRQAEREGYKVTKAGDGTIYVVQQPGDN
HHHHCCEEECCCCCCCCCEEECCCCCHHHHCCCHHHHHCCEEEEECCCCEEEEEECCCCC
NSLGRMKLDMPNEHAIFLHDTPNRNLFNLPARALSHGCVRVERATELAMTMAILGAGMTP
CCCCEEEECCCCCCEEEEECCCCCCEEECCHHHHHCCCEEHHHHHHHHHHHHHHHCCCCC
DDAVAAHTSKVYTKVPMTKTFPVYLTYFTVARDVNGMLRSFPDIYNRDAPVLATFAQPRQ
CHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEECCCCHH
LHTTQRKSNEEVIKLDNPL
HHHHHHCCCCCEEEECCCC
>Mature Secondary Structure 
TAPAAKMRVNGEVRKVKRANLGAGLSGMLGVAVVALTFASQPLAAKAGTQAGSQAGTQA
CCCCCCEEECCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHCCCCCCCHHCCHH
GTQAGTQAGPVDLTKQAKPAPVVAPTATPTAAPAASPTVSPTAAPVEAPTPVPAPHWTQS
CHHCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
DAQGLLAMIKGIGAEGLFPRDYQPEALSAAILKGEGPELDETATRLFTWLAEDLRDGRTP
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHCCCCC
MTARVQWFAVDPDQDVHPTSLILADALARHDVKGALMALLPTVPDYAALKAALPKAQTQK
CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHH
QAALIRANMDRWRWLARDLGTQYLLANVPEQVLRLTVRNKIISTYKVIVGKPGKTATPQL
HHHHHHHCHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHH
AETVEGVIFNPTWTVPQSIVVGEGLGARLVNNPRQAEREGYKVTKAGDGTIYVVQQPGDN
HHHHCCEEECCCCCCCCCEEECCCCCHHHHCCCHHHHHCCEEEEECCCCEEEEEECCCCC
NSLGRMKLDMPNEHAIFLHDTPNRNLFNLPARALSHGCVRVERATELAMTMAILGAGMTP
CCCCEEEECCCCCCEEEEECCCCCCEEECCHHHHHCCCEEHHHHHHHHHHHHHHHCCCCC
DDAVAAHTSKVYTKVPMTKTFPVYLTYFTVARDVNGMLRSFPDIYNRDAPVLATFAQPRQ
CHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCCEEEECCCCHH
LHTTQRKSNEEVIKLDNPL
HHHHHHCCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]