Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198374
Identifier: 87198374
GI number: 87198374
Start: 375088
End: 376569
Strand: Direct
Name: 87198374
Synonym: Saro_0349
Alternate gene names: NA
Gene position: 375088-376569 (Clockwise)
Preceding gene: 87198373
Following gene: 87198375
Centisome position: 10.53
GC content: 66.13
Gene sequence:
>1482_bases ATGACGCAAATTCGCACCGCCACTCGCCGTTTTGGCCTGTCCAAATCCAAGATCACCGCTTTCGAGCAATGCCCCAAGAA GCTGTGGCTCGCGACCCATCGCCCCGAGCTTGCGGAGCAGGACGATGGGGCTGAGGCGCGGTTCGCGACCGGTAATGCCG TGGGCGAGATCGCCTGCGCGCTTCATCCAGACGGTGTGATGGTCGATCCTCCGTCGTTGTCTGAAGCGCTGGCCAAGACC TCCTCGCTCATTTCAGAAGGGCATCCTGGCCCGATCTTCGAGGCGACCTTCGAGCATGATGGCGTGCTTGTGCGGGTCGA TGTGCTGGAGCGGCTCGATAGCGGGGGCTGGTCAGCGGCCGAGGTCAAAAGCTCGGGCAGGGTCAAGGATTACCACCGCG GCGATCTCGCCACGCAGGTCTGGGTCATGCGTGAGGCGGGGATCAACCTGCAGCGCGCGGCCATCCGCCATATCGACACC AGTTTCGTGCTTTCACGTGAGGGCGATTACGCGGGGCTCTTCACCGATGCCGATCTGCTCGCCGACTTGGAGGACGCCAT CGCCACGCGCCCTTCGCTGGTGGCCGAGGCGCGCGCCACTTTGTCCGGAGACGAACCGCAGCGCGAGATGGGCGATCATT GCGGCGCGCCGTTCAGCTGCGAGTTTACCGCTTATTGCGGCCGCGACCTCCCGCAAGGGCCTGAATGGCCCGTGACCCTG CTCCCCTATGGCGGCGGCAGGCGCTGGCTGGAGCGCGGGGTCGAGGACCTGCTCGACTTGGCCGAGACCGACCTCAACGA CCGCCACGCACGCATCCTTGCCGCCACGCGCGATGGCATCCCGTTCCACGATGCCGCAGGGGCGCGTAAAGTGATGGCCG GATGGGGCTGGCCACGCGCCTGGCTCGACTTCGAGACCGTCGCCCCCGCGATTCCGCGCTGGGTCGGTACCCGCCCGTTC CAGCAGATCCCGTTCCAGTTCTCGCTTCACCTCGAACGGCGCGGCGGGCGCATGACCCATCATGAGTTCCTGAGCTGCGA CGGCAGCGACCCGCGCCGGGCCTGCGCCGAAGCGCTGGTGTCAAACATCCCCGAGGGTGCCACGATCATCGCCTACAACG CCGCCTTCGAGCGCAGCGTGCTACGCGAGCTTGCAGCATCCTTCCCCGATCTCTCCTCCCGTCTTGAAGCGATGGCCGAG GCGACGGTCGATCTTCTGCCGGTCGCTCGGAACCACTGGTATCACCGTGATCAGCGCGGCAGCTGGTCGATCAAGGCTGT GCTCCCGACCATCGCTGCCGAGCTTGATTACGGCGTCCTCGAAGTGAAGGATGGCGGTGATGCGCAGGCGGCATGGTTCG AAGCTGCCGATCCTGCCTGCGATCCGCTGCGGCGCGAGGCGCTGGAAGAAGCGCTGAAGGCTTATTGCGCGCGCGACACG TGGGCGATGGTCGCGGTGGCGCGGGCGCTGGCGGGAAGTTGA
Upstream 100 bases:
>100_bases ATGATGGATAACCCGGACGAGGATTGGGCGATGCCGCTCTATCCCGTCATTGAGGAATGAATGACCGTTTCTGTCGCATC ATCGCTGCAGGAATCACAGC
Downstream 100 bases:
>100_bases TGGAGGGGCGCCGTACTTCTGGTGGTCAGGCGAATTACCATTCGCAAGCTTAGGCACGAAAAATCTGAAGCTTTATCATT TCGATGACCAAATCTGTCGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MTQIRTATRRFGLSKSKITAFEQCPKKLWLATHRPELAEQDDGAEARFATGNAVGEIACALHPDGVMVDPPSLSEALAKT SSLISEGHPGPIFEATFEHDGVLVRVDVLERLDSGGWSAAEVKSSGRVKDYHRGDLATQVWVMREAGINLQRAAIRHIDT SFVLSREGDYAGLFTDADLLADLEDAIATRPSLVAEARATLSGDEPQREMGDHCGAPFSCEFTAYCGRDLPQGPEWPVTL LPYGGGRRWLERGVEDLLDLAETDLNDRHARILAATRDGIPFHDAAGARKVMAGWGWPRAWLDFETVAPAIPRWVGTRPF QQIPFQFSLHLERRGGRMTHHEFLSCDGSDPRRACAEALVSNIPEGATIIAYNAAFERSVLRELAASFPDLSSRLEAMAE ATVDLLPVARNHWYHRDQRGSWSIKAVLPTIAAELDYGVLEVKDGGDAQAAWFEAADPACDPLRREALEEALKAYCARDT WAMVAVARALAGS
Sequences:
>Translated_493_residues MTQIRTATRRFGLSKSKITAFEQCPKKLWLATHRPELAEQDDGAEARFATGNAVGEIACALHPDGVMVDPPSLSEALAKT SSLISEGHPGPIFEATFEHDGVLVRVDVLERLDSGGWSAAEVKSSGRVKDYHRGDLATQVWVMREAGINLQRAAIRHIDT SFVLSREGDYAGLFTDADLLADLEDAIATRPSLVAEARATLSGDEPQREMGDHCGAPFSCEFTAYCGRDLPQGPEWPVTL LPYGGGRRWLERGVEDLLDLAETDLNDRHARILAATRDGIPFHDAAGARKVMAGWGWPRAWLDFETVAPAIPRWVGTRPF QQIPFQFSLHLERRGGRMTHHEFLSCDGSDPRRACAEALVSNIPEGATIIAYNAAFERSVLRELAASFPDLSSRLEAMAE ATVDLLPVARNHWYHRDQRGSWSIKAVLPTIAAELDYGVLEVKDGGDAQAAWFEAADPACDPLRREALEEALKAYCARDT WAMVAVARALAGS >Mature_492_residues TQIRTATRRFGLSKSKITAFEQCPKKLWLATHRPELAEQDDGAEARFATGNAVGEIACALHPDGVMVDPPSLSEALAKTS SLISEGHPGPIFEATFEHDGVLVRVDVLERLDSGGWSAAEVKSSGRVKDYHRGDLATQVWVMREAGINLQRAAIRHIDTS FVLSREGDYAGLFTDADLLADLEDAIATRPSLVAEARATLSGDEPQREMGDHCGAPFSCEFTAYCGRDLPQGPEWPVTLL PYGGGRRWLERGVEDLLDLAETDLNDRHARILAATRDGIPFHDAAGARKVMAGWGWPRAWLDFETVAPAIPRWVGTRPFQ QIPFQFSLHLERRGGRMTHHEFLSCDGSDPRRACAEALVSNIPEGATIIAYNAAFERSVLRELAASFPDLSSRLEAMAEA TVDLLPVARNHWYHRDQRGSWSIKAVLPTIAAELDYGVLEVKDGGDAQAAWFEAADPACDPLRREALEEALKAYCARDTW AMVAVARALAGS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54050; Mature: 53919
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQIRTATRRFGLSKSKITAFEQCPKKLWLATHRPELAEQDDGAEARFATGNAVGEIACA CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHEEEEE LHPDGVMVDPPSLSEALAKTSSLISEGHPGPIFEATFEHDGVLVRVDVLERLDSGGWSAA ECCCCEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEHHHHHHCCCCCCHH EVKSSGRVKDYHRGDLATQVWVMREAGINLQRAAIRHIDTSFVLSREGDYAGLFTDADLL HHCCCCCCCCHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCEEEEEECHHHH ADLEDAIATRPSLVAEARATLSGDEPQREMGDHCGAPFSCEFTAYCGRDLPQGPEWPVTL HHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEHHHCCCCCCCCCCCCEEE LPYGGGRRWLERGVEDLLDLAETDLNDRHARILAATRDGIPFHDAAGARKVMAGWGWPRA EECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCHH WLDFETVAPAIPRWVGTRPFQQIPFQFSLHLERRGGRMTHHEFLSCDGSDPRRACAEALV HCCHHHHHHHHHHHHCCCCHHHCCEEEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHH SNIPEGATIIAYNAAFERSVLRELAASFPDLSSRLEAMAEATVDLLPVARNHWYHRDQRG HCCCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC SWSIKAVLPTIAAELDYGVLEVKDGGDAQAAWFEAADPACDPLRREALEEALKAYCARDT CEEHHHHHHHHHHHCCCCEEEECCCCCCCHHEECCCCCCCCHHHHHHHHHHHHHHHCCCH WAMVAVARALAGS HHHHHHHHHHHCC >Mature Secondary Structure TQIRTATRRFGLSKSKITAFEQCPKKLWLATHRPELAEQDDGAEARFATGNAVGEIACA CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHEEEEE LHPDGVMVDPPSLSEALAKTSSLISEGHPGPIFEATFEHDGVLVRVDVLERLDSGGWSAA ECCCCEEECCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEEEHHHHHHCCCCCCHH EVKSSGRVKDYHRGDLATQVWVMREAGINLQRAAIRHIDTSFVLSREGDYAGLFTDADLL HHCCCCCCCCHHCCCHHHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCEEEEEECHHHH ADLEDAIATRPSLVAEARATLSGDEPQREMGDHCGAPFSCEFTAYCGRDLPQGPEWPVTL HHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCEEEHHHCCCCCCCCCCCCEEE LPYGGGRRWLERGVEDLLDLAETDLNDRHARILAATRDGIPFHDAAGARKVMAGWGWPRA EECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHCCCCCHH WLDFETVAPAIPRWVGTRPFQQIPFQFSLHLERRGGRMTHHEFLSCDGSDPRRACAEALV HCCHHHHHHHHHHHHCCCCHHHCCEEEEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHH SNIPEGATIIAYNAAFERSVLRELAASFPDLSSRLEAMAEATVDLLPVARNHWYHRDQRG HCCCCCCEEEEECHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC SWSIKAVLPTIAAELDYGVLEVKDGGDAQAAWFEAADPACDPLRREALEEALKAYCARDT CEEHHHHHHHHHHHCCCCEEEECCCCCCCHHEECCCCCCCCHHHHHHHHHHHHHHHCCCH WAMVAVARALAGS HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA