Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
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Accession | NC_007794 |
Length | 3,561,584 |
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The map label for this gene is 87198285
Identifier: 87198285
GI number: 87198285
Start: 274181
End: 276076
Strand: Direct
Name: 87198285
Synonym: Saro_0260
Alternate gene names: NA
Gene position: 274181-276076 (Clockwise)
Preceding gene: 87198284
Following gene: 87198286
Centisome position: 7.7
GC content: 58.33
Gene sequence:
>1896_bases GTGAAGCCGGAAAAGCTGAGCGTACAGGAACTGTTTTCCCGTGAGCGCCGATTCATCATCCCCCTTTTCCAGCGTGCCTA TGTTTGGAATCAGGAGGAGCAGTGGGAACCGCTTTGGGAGGATATCTCCCGCCGTGCCCATGCGCATCTTCAGCGCTTGG GTCTGCCCGCCGAAGGTAAGGTTCGCACGCATTTCCTTGGGGCCGTCGTGCTCAATGTGGCCAACGTCATGGGGCGCGGA ATCTCTCGCTCAGACGTGATCGACGGACAGCAGCGGTTGACCACACTGCAGCTATTCCTAGCCGCCCTGAGGGACATGAG CGGGGAGCTTGGTGCTGACGCCGATGATATCCGCCTGTTCAAGCGCCTCACTCGCAACCCGGATTGCGAGGAAGGATCGG AGGAATTGTTCAAAGTCTGGCCGACCAACTCTGACCGTGAGGTTTTCTCACAGGTAATGTCGGCGGGCAGTCCTGCCGCC TTGGAAGCGCGTTTCCCCGAAAACACCGGCGGCCGACCACGCATGGTCCAAGCATACCTCTTCTTCGCCAGGGCTATCGC TGAATTCATTCGTTCGGCCGAACATGCCAGTTCGGCGCCGGATCGCTTTTTGTCGCTGGTCTCCGCGCTCAAGGAATCGC TGCAACTCATCGTGATCGAATTGGAGGAAGGTGACGACCCACAGGTTATCTTCGAAACGCTGAACGCACGCGGCCAGCCG CTTCTCCCTTCCGACCTGATCCGCAACTACGTTTTCATGCGCATAGGCGATGCGGAGGGCAATCGTCTCTACCAGACCTA CTGGTCGCACTTTGACACCGAACAGGTCATGGTGCCCGGGAGCGACGGCGAGAGCAGGTTCTGGCACGTAGAAGAACGCC AAGGCCGCCTTGTGCGGCCGCGCATCGACCTATTCATTTTCCATTACCTGACAATGCATACCGAGGACGATATCCGCATC GGACACCTGTTCAAGGAGTTCCGCGATTGGCGCGACGCGAACAGCACGAGCAACGAGGACTTCCTCAAGGACCTGAAGAC GGCGAGCCATCATTTCGCCCGTCTGATCGCGCCCAAAGGCAATTCCCGGCTGGAAGTCTTCGCTAGCAGGCTCCGTGCGC TCGACACCAGCACGGTTCACCCGCTTCTGCTCTTCCTGGCTTCGGTTGAAGGGCAAGGCATTCCAGTGGCGGAAGTTGAC CAGATCATCGTCGATCTCGAATCCTACATGGTCCGCCGTTTCATCTGCTGGCAAACGCCGAAAAACTATAACCGCTTCTT CCTGTCCCTGCTGACAAAGGTAAAGCAGGCCTATGCGGCCCGTGCCAAGGCTGACGATACGGCGCTTGCCGATCTGCCCA CCGTGGCCGAAGTGGTCCGTACGGAACTGTTGCGCTCTCAGGAAGCCTCTGCCTTCTGGCCCAGCGACGAGCGCTTCCGG GAGGGATGGCTTAACAATCCGGTTTACGTATCCTCCCGCGCAGACCGCAGTGCAATGATTCTACGCGCACTTGGTGATGC GATGACGACTTCGAGGAACGAGCAACTCGATCTCTCAGGTCCGGTCACTGTCGAACACCTCCTTCCTCAGAAGGGCGCGA TCGAGGACTATCCCTATCTCGAAATCTCTTTGCCGCAAAATCATGACGAGGCGAGCTGGCGCAAGGTGCTGGTCAACACA GTCGGCAATCTCACTCTGCTGACCGGTGCCAACAACACCGCTGCGTCGAACCATGCATTCCCGGTCAAGCGAGCAAAGAT CGTTGAACACAGCGATCTGCGCCTCAACGCCTGGTTGCGCACCGACACGCGCGACAGCTGGAACGAAACTGACATTCTCG CGCGCGGCGAAGAACTCTTCCATTTTGCCCTTAAAATCTGGCCTCGCCCCGCATGA
Upstream 100 bases:
>100_bases GGGCGTGATCGGTGCAATTTTGTACGTCGGCCGTAAAAGCTGAGGCTTGCTGCCAACATACTGCAGTGTAATGATTTCGG GGAAGTGTGAGGGGGATAGT
Downstream 100 bases:
>100_bases ACCCCGTAGAGATTGAAGAAGCCGTCTCGGACCTCGCTCGCGCACCCTATGACGCTTCCGAGTTTCCGTTCCAGTTCCTT GCCGCTTTCGGCAACAAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 631; Mature: 631
Protein sequence:
>631_residues MKPEKLSVQELFSRERRFIIPLFQRAYVWNQEEQWEPLWEDISRRAHAHLQRLGLPAEGKVRTHFLGAVVLNVANVMGRG ISRSDVIDGQQRLTTLQLFLAALRDMSGELGADADDIRLFKRLTRNPDCEEGSEELFKVWPTNSDREVFSQVMSAGSPAA LEARFPENTGGRPRMVQAYLFFARAIAEFIRSAEHASSAPDRFLSLVSALKESLQLIVIELEEGDDPQVIFETLNARGQP LLPSDLIRNYVFMRIGDAEGNRLYQTYWSHFDTEQVMVPGSDGESRFWHVEERQGRLVRPRIDLFIFHYLTMHTEDDIRI GHLFKEFRDWRDANSTSNEDFLKDLKTASHHFARLIAPKGNSRLEVFASRLRALDTSTVHPLLLFLASVEGQGIPVAEVD QIIVDLESYMVRRFICWQTPKNYNRFFLSLLTKVKQAYAARAKADDTALADLPTVAEVVRTELLRSQEASAFWPSDERFR EGWLNNPVYVSSRADRSAMILRALGDAMTTSRNEQLDLSGPVTVEHLLPQKGAIEDYPYLEISLPQNHDEASWRKVLVNT VGNLTLLTGANNTAASNHAFPVKRAKIVEHSDLRLNAWLRTDTRDSWNETDILARGEELFHFALKIWPRPA
Sequences:
>Translated_631_residues MKPEKLSVQELFSRERRFIIPLFQRAYVWNQEEQWEPLWEDISRRAHAHLQRLGLPAEGKVRTHFLGAVVLNVANVMGRG ISRSDVIDGQQRLTTLQLFLAALRDMSGELGADADDIRLFKRLTRNPDCEEGSEELFKVWPTNSDREVFSQVMSAGSPAA LEARFPENTGGRPRMVQAYLFFARAIAEFIRSAEHASSAPDRFLSLVSALKESLQLIVIELEEGDDPQVIFETLNARGQP LLPSDLIRNYVFMRIGDAEGNRLYQTYWSHFDTEQVMVPGSDGESRFWHVEERQGRLVRPRIDLFIFHYLTMHTEDDIRI GHLFKEFRDWRDANSTSNEDFLKDLKTASHHFARLIAPKGNSRLEVFASRLRALDTSTVHPLLLFLASVEGQGIPVAEVD QIIVDLESYMVRRFICWQTPKNYNRFFLSLLTKVKQAYAARAKADDTALADLPTVAEVVRTELLRSQEASAFWPSDERFR EGWLNNPVYVSSRADRSAMILRALGDAMTTSRNEQLDLSGPVTVEHLLPQKGAIEDYPYLEISLPQNHDEASWRKVLVNT VGNLTLLTGANNTAASNHAFPVKRAKIVEHSDLRLNAWLRTDTRDSWNETDILARGEELFHFALKIWPRPA >Mature_631_residues MKPEKLSVQELFSRERRFIIPLFQRAYVWNQEEQWEPLWEDISRRAHAHLQRLGLPAEGKVRTHFLGAVVLNVANVMGRG ISRSDVIDGQQRLTTLQLFLAALRDMSGELGADADDIRLFKRLTRNPDCEEGSEELFKVWPTNSDREVFSQVMSAGSPAA LEARFPENTGGRPRMVQAYLFFARAIAEFIRSAEHASSAPDRFLSLVSALKESLQLIVIELEEGDDPQVIFETLNARGQP LLPSDLIRNYVFMRIGDAEGNRLYQTYWSHFDTEQVMVPGSDGESRFWHVEERQGRLVRPRIDLFIFHYLTMHTEDDIRI GHLFKEFRDWRDANSTSNEDFLKDLKTASHHFARLIAPKGNSRLEVFASRLRALDTSTVHPLLLFLASVEGQGIPVAEVD QIIVDLESYMVRRFICWQTPKNYNRFFLSLLTKVKQAYAARAKADDTALADLPTVAEVVRTELLRSQEASAFWPSDERFR EGWLNNPVYVSSRADRSAMILRALGDAMTTSRNEQLDLSGPVTVEHLLPQKGAIEDYPYLEISLPQNHDEASWRKVLVNT VGNLTLLTGANNTAASNHAFPVKRAKIVEHSDLRLNAWLRTDTRDSWNETDILARGEELFHFALKIWPRPA
Specific function: Unknown
COG id: COG1479
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 72141; Mature: 72141
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPEKLSVQELFSRERRFIIPLFQRAYVWNQEEQWEPLWEDISRRAHAHLQRLGLPAEGK CCCCCCCHHHHHHCCCCEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC VRTHFLGAVVLNVANVMGRGISRSDVIDGQQRLTTLQLFLAALRDMSGELGADADDIRLF HHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH KRLTRNPDCEEGSEELFKVWPTNSDREVFSQVMSAGSPAALEARFPENTGGRPRMVQAYL HHHHCCCCCCCCHHHHHEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHH FFARAIAEFIRSAEHASSAPDRFLSLVSALKESLQLIVIELEEGDDPQVIFETLNARGQP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHCCCCCC LLPSDLIRNYVFMRIGDAEGNRLYQTYWSHFDTEQVMVPGSDGESRFWHVEERQGRLVRP CCHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCCCCEEEEHHCCCCEECH RIDLFIFHYLTMHTEDDIRIGHLFKEFRDWRDANSTSNEDFLKDLKTASHHFARLIAPKG HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC NSRLEVFASRLRALDTSTVHPLLLFLASVEGQGIPVAEVDQIIVDLESYMVRRFICWQTP CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC KNYNRFFLSLLTKVKQAYAARAKADDTALADLPTVAEVVRTELLRSQEASAFWPSDERFR CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH EGWLNNPVYVSSRADRSAMILRALGDAMTTSRNEQLDLSGPVTVEHLLPQKGAIEDYPYL HCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHCCCCCCCCCCCEE EISLPQNHDEASWRKVLVNTVGNLTLLTGANNTAASNHAFPVKRAKIVEHSDLRLNAWLR EEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEE TDTRDSWNETDILARGEELFHFALKIWPRPA CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MKPEKLSVQELFSRERRFIIPLFQRAYVWNQEEQWEPLWEDISRRAHAHLQRLGLPAEGK CCCCCCCHHHHHHCCCCEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC VRTHFLGAVVLNVANVMGRGISRSDVIDGQQRLTTLQLFLAALRDMSGELGADADDIRLF HHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH KRLTRNPDCEEGSEELFKVWPTNSDREVFSQVMSAGSPAALEARFPENTGGRPRMVQAYL HHHHCCCCCCCCHHHHHEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHH FFARAIAEFIRSAEHASSAPDRFLSLVSALKESLQLIVIELEEGDDPQVIFETLNARGQP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHCCCCCC LLPSDLIRNYVFMRIGDAEGNRLYQTYWSHFDTEQVMVPGSDGESRFWHVEERQGRLVRP CCHHHHHCCEEEEEECCCCCCHHHHHHHHCCCCCEEEECCCCCCCCEEEEHHCCCCEECH RIDLFIFHYLTMHTEDDIRIGHLFKEFRDWRDANSTSNEDFLKDLKTASHHFARLIAPKG HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC NSRLEVFASRLRALDTSTVHPLLLFLASVEGQGIPVAEVDQIIVDLESYMVRRFICWQTP CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC KNYNRFFLSLLTKVKQAYAARAKADDTALADLPTVAEVVRTELLRSQEASAFWPSDERFR CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH EGWLNNPVYVSSRADRSAMILRALGDAMTTSRNEQLDLSGPVTVEHLLPQKGAIEDYPYL HCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHCCCCCCCCCCCEE EISLPQNHDEASWRKVLVNTVGNLTLLTGANNTAASNHAFPVKRAKIVEHSDLRLNAWLR EEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHCCCCCCEEEEEEE TDTRDSWNETDILARGEELFHFALKIWPRPA CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA