| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
Click here to switch to the map view.
The map label for this gene is slt [H]
Identifier: 86750152
GI number: 86750152
Start: 3457737
End: 3459980
Strand: Direct
Name: slt [H]
Synonym: RPB_3035
Alternate gene names: 86750152
Gene position: 3457737-3459980 (Clockwise)
Preceding gene: 86750150
Following gene: 86750156
Centisome position: 64.85
GC content: 68.18
Gene sequence:
>2244_bases TTGCATAGCAACCGATCCATCCGACGCATCCCCCACCTCGCCGCCCTGTTGCGTGCGTCGACGGCGACGCTGGCGTTGAG CATCGGACTCAGCGGGTTTTCGATCGAGGCCCAGGCCGCTTCCAAGAAAGTCCCGCTGCCGAAGCCGCGACCGATCTCGC GCAGCATCGTGCCGAAGACCGCCCCCGCGACTGTCGCCTCCATTCCCAAGCCCTCGGCGCCGCTCGCGATCGCCGCGCCC ACCGCGCCGGCGATCGATGCCGCGCGTCCGCATGCGGCGCCCCCGATGGTGACTCGCAAGCCGGCCACGCGGTCGGCAGT GGCGGCCACGGCGCAGACATCGCAGGCCGACGCCAACGCGCTCGAAAACGTCATCGAGCAGGTCCGCAAGCGCAAGGCCG CCGATGCGACGCAGATCGCGGACACGATGTCCGATCCGCTGGCGCGCAAGCTCGCCGAATGGATCATCCTGCGCGCGGAA TACAACGGCGCCAGCGTCGAGCGCTATCGCGCCTTCGTGCGCGCCAATCCGAGCTGGCCGTCGCAGACATTCTTCCGCCG CCGCGCCGAAGCCGCGCTGTGGGACGACAACCGCAACGACGACGCGGTGCTGGCCTATTTCGACAACGAGAGACCCCTGT CTGCAAAGGGCAAGCTGGCGCTGGCGCGTGCGATGCTGGCGCGCGGCGACCGTCGCACGGCGGAGCAGCTCGTGCGCGAC GCCTGGCGCAACGATTCGATGTCGGCTGCGCTCGAAACCTCCGCGATCGAGATGTTCGGCGCGCTGCTCACACCGGGTGA TCACAAGGCGCGGATGGACGCGTTCCTTTACGGCAACGACAATGATCCCGGACTACGCGCCGCGAAACGGCTGGGTGCCG CGCAGTTCGCGCTGGCGCGAGCCCGCCTCGCGGTCGACAACAAGTCCGGACAGGGCAAGGCTTTGCTCGATGCGGTGCCG TCCGACCTGCACAGCGACCCGGGCTATATGTTCGCCAGCATCCAGACGTTGCGCCGCGATGAGAAGATCGCCGAGGCCGG ACGCCTGATGCTGACCGTCCCGCGCGACCCCAACCGGCTGCACAATCTCGACGAATGGTGGATCGAGCGGCGGCTGCTGG CGCGCAAGCTGATCGATATCGGCGACTATCGGCTGGCCTATCTGGTCGCCCGCAACGCCGCGACGCCGACGCGCGAAGTC TACAAGACCGAGCATGAATTCACCGCGGGATGGATCGCGCTGCGGTTGCTCAAGGACCCGGCGACCGCCGCCCAGCATTT CGCCCGGATCGGCACCGACACCACCAATCCGACCGCGCTGGCGCGCGCCGGCTATTGGCAGGGCCGGGCCGCGGAGGCGA TGGGCCGGACGCAGGATGCGCGTGCGGCCTACTCGGCGGCGGCCGCCCAATCGACCAGCTATTACGGGCAATTGGCGCGC GCCAAGCTCGGCCTGCCGCAGCTCGACCTCAACGGCGCACCGTCGAGCCATGGGCGCGGCGTCGAGCGCCTCGAAGTCGT GCGCGCGGTGCAATTGCTCTACGCCATCGGTGAAGGCGACGTCGCGATCCCGATTTTCGCCGATGTCGGCGAGAACGGCG ACACCGACGCCCTGCTCGGCCTGTCCGAACTCGCGGCCCGCAACAACGATGCGCGCGCGATGCTGCTGGTCGGCAAGGCG GCGCTCAACCGCGGCCTGCCGTTCGATCACTACGCCTATCCGATGGTGGGCATTCCGCAGTTCAAGCAGTTCGGCCCGGA GGTCGAGCGCAGCATCGTCTACGCGATCGCGCGCCAGGAAAGCGGCTTCAATCCGGCCGTGGTGTCGCCGGCGCAGGCCT ATGGCCTGATGCAGGTGACGCCCGACGCGGCGAAGTATGTCTGTCGCCGTCACGGCTGCACCTACGACGCCAGGCGATTG AAGGACGATTCGGTCTACAACGCCGCGCTCGGCGCGGCCGAGCTGGGCGGACTGATCGAGGATTACCGCGGCTCCTACAT CATGACCTTCGCCGGCTACAATGCCGGCCGCGGCAGTGTGCGCAAATGGGTCGAGCGTTACGGCGACCCCCGCGATCCGA AGGTCGACGCGGTCGACTGGGTCGAACTGATTCCGTTCTCCGAGACCCGCAACTACGTGCAGCGCATCATGGAGAACCTG CAGGTCTATCGCGCGCGATTCGGCGGCGGCAATCGTCTGCAGATCGACGCCGATCTGCGCCGCGGCGCCGCGGCGGTCGA GTAG
Upstream 100 bases:
>100_bases CGGCGGGAAGCGTACGTTCCTGGACGCCGGACTGCCTTCACTTGTCTGGCCGATGCTGACAGAATCGCACGAATCGCCCG CTCACCGGGGACCACAGCGA
Downstream 100 bases:
>100_bases CAGCCCACCCGCGCCATCCGCGTTGGGGGATCAGGCCGGCTGCGGCGAGCCCCGGCCTGCGGTTCGGCAGGTTGGTCCGC TTGCGGCACGCCTGCCCCAG
Product: lytic transglycosylase, catalytic
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 747; Mature: 747
Protein sequence:
>747_residues MHSNRSIRRIPHLAALLRASTATLALSIGLSGFSIEAQAASKKVPLPKPRPISRSIVPKTAPATVASIPKPSAPLAIAAP TAPAIDAARPHAAPPMVTRKPATRSAVAATAQTSQADANALENVIEQVRKRKAADATQIADTMSDPLARKLAEWIILRAE YNGASVERYRAFVRANPSWPSQTFFRRRAEAALWDDNRNDDAVLAYFDNERPLSAKGKLALARAMLARGDRRTAEQLVRD AWRNDSMSAALETSAIEMFGALLTPGDHKARMDAFLYGNDNDPGLRAAKRLGAAQFALARARLAVDNKSGQGKALLDAVP SDLHSDPGYMFASIQTLRRDEKIAEAGRLMLTVPRDPNRLHNLDEWWIERRLLARKLIDIGDYRLAYLVARNAATPTREV YKTEHEFTAGWIALRLLKDPATAAQHFARIGTDTTNPTALARAGYWQGRAAEAMGRTQDARAAYSAAAAQSTSYYGQLAR AKLGLPQLDLNGAPSSHGRGVERLEVVRAVQLLYAIGEGDVAIPIFADVGENGDTDALLGLSELAARNNDARAMLLVGKA ALNRGLPFDHYAYPMVGIPQFKQFGPEVERSIVYAIARQESGFNPAVVSPAQAYGLMQVTPDAAKYVCRRHGCTYDARRL KDDSVYNAALGAAELGGLIEDYRGSYIMTFAGYNAGRGSVRKWVERYGDPRDPKVDAVDWVELIPFSETRNYVQRIMENL QVYRARFGGGNRLQIDADLRRGAAAVE
Sequences:
>Translated_747_residues MHSNRSIRRIPHLAALLRASTATLALSIGLSGFSIEAQAASKKVPLPKPRPISRSIVPKTAPATVASIPKPSAPLAIAAP TAPAIDAARPHAAPPMVTRKPATRSAVAATAQTSQADANALENVIEQVRKRKAADATQIADTMSDPLARKLAEWIILRAE YNGASVERYRAFVRANPSWPSQTFFRRRAEAALWDDNRNDDAVLAYFDNERPLSAKGKLALARAMLARGDRRTAEQLVRD AWRNDSMSAALETSAIEMFGALLTPGDHKARMDAFLYGNDNDPGLRAAKRLGAAQFALARARLAVDNKSGQGKALLDAVP SDLHSDPGYMFASIQTLRRDEKIAEAGRLMLTVPRDPNRLHNLDEWWIERRLLARKLIDIGDYRLAYLVARNAATPTREV YKTEHEFTAGWIALRLLKDPATAAQHFARIGTDTTNPTALARAGYWQGRAAEAMGRTQDARAAYSAAAAQSTSYYGQLAR AKLGLPQLDLNGAPSSHGRGVERLEVVRAVQLLYAIGEGDVAIPIFADVGENGDTDALLGLSELAARNNDARAMLLVGKA ALNRGLPFDHYAYPMVGIPQFKQFGPEVERSIVYAIARQESGFNPAVVSPAQAYGLMQVTPDAAKYVCRRHGCTYDARRL KDDSVYNAALGAAELGGLIEDYRGSYIMTFAGYNAGRGSVRKWVERYGDPRDPKVDAVDWVELIPFSETRNYVQRIMENL QVYRARFGGGNRLQIDADLRRGAAAVE >Mature_747_residues MHSNRSIRRIPHLAALLRASTATLALSIGLSGFSIEAQAASKKVPLPKPRPISRSIVPKTAPATVASIPKPSAPLAIAAP TAPAIDAARPHAAPPMVTRKPATRSAVAATAQTSQADANALENVIEQVRKRKAADATQIADTMSDPLARKLAEWIILRAE YNGASVERYRAFVRANPSWPSQTFFRRRAEAALWDDNRNDDAVLAYFDNERPLSAKGKLALARAMLARGDRRTAEQLVRD AWRNDSMSAALETSAIEMFGALLTPGDHKARMDAFLYGNDNDPGLRAAKRLGAAQFALARARLAVDNKSGQGKALLDAVP SDLHSDPGYMFASIQTLRRDEKIAEAGRLMLTVPRDPNRLHNLDEWWIERRLLARKLIDIGDYRLAYLVARNAATPTREV YKTEHEFTAGWIALRLLKDPATAAQHFARIGTDTTNPTALARAGYWQGRAAEAMGRTQDARAAYSAAAAQSTSYYGQLAR AKLGLPQLDLNGAPSSHGRGVERLEVVRAVQLLYAIGEGDVAIPIFADVGENGDTDALLGLSELAARNNDARAMLLVGKA ALNRGLPFDHYAYPMVGIPQFKQFGPEVERSIVYAIARQESGFNPAVVSPAQAYGLMQVTPDAAKYVCRRHGCTYDARRL KDDSVYNAALGAAELGGLIEDYRGSYIMTFAGYNAGRGSVRKWVERYGDPRDPKVDAVDWVELIPFSETRNYVQRIMENL QVYRARFGGGNRLQIDADLRRGAAAVE
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=169, Percent_Identity=35.5029585798817, Blast_Score=91, Evalue=4e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 81560; Mature: 81560
Theoretical pI: Translated: 10.04; Mature: 10.04
Prosite motif: PS00922 TRANSGLYCOSYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSNRSIRRIPHLAALLRASTATLALSIGLSGFSIEAQAASKKVPLPKPRPISRSIVPKT CCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCC APATVASIPKPSAPLAIAAPTAPAIDAARPHAAPPMVTRKPATRSAVAATAQTSQADANA CCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHH LENVIEQVRKRKAADATQIADTMSDPLARKLAEWIILRAEYNGASVERYRAFVRANPSWP HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCCCCCC SQTFFRRRAEAALWDDNRNDDAVLAYFDNERPLSAKGKLALARAMLARGDRRTAEQLVRD HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH AWRNDSMSAALETSAIEMFGALLTPGDHKARMDAFLYGNDNDPGLRAAKRLGAAQFALAR HHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH ARLAVDNKSGQGKALLDAVPSDLHSDPGYMFASIQTLRRDEKIAEAGRLMLTVPRDPNRL HHHEECCCCCCCCHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHH HNLDEWWIERRLLARKLIDIGDYRLAYLVARNAATPTREVYKTEHEFTAGWIALRLLKDP CCCHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCH ATAAQHFARIGTDTTNPTALARAGYWQGRAAEAMGRTQDARAAYSAAAAQSTSYYGQLAR HHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH AKLGLPQLDLNGAPSSHGRGVERLEVVRAVQLLYAIGEGDVAIPIFADVGENGDTDALLG HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHH LSELAARNNDARAMLLVGKAALNRGLPFDHYAYPMVGIPQFKQFGPEVERSIVYAIARQE HHHHHHCCCCCEEEEEEEHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCC SGFNPAVVSPAQAYGLMQVTPDAAKYVCRRHGCTYDARRLKDDSVYNAALGAAELGGLIE CCCCCCEECHHHHCCEEEECCHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH DYRGSYIMTFAGYNAGRGSVRKWVERYGDPRDPKVDAVDWVELIPFSETRNYVQRIMENL HHCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH QVYRARFGGGNRLQIDADLRRGAAAVE HHHHHHCCCCCEEEECHHHHCCCCCCC >Mature Secondary Structure MHSNRSIRRIPHLAALLRASTATLALSIGLSGFSIEAQAASKKVPLPKPRPISRSIVPKT CCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCC APATVASIPKPSAPLAIAAPTAPAIDAARPHAAPPMVTRKPATRSAVAATAQTSQADANA CCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHH LENVIEQVRKRKAADATQIADTMSDPLARKLAEWIILRAEYNGASVERYRAFVRANPSWP HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHCCCCCCC SQTFFRRRAEAALWDDNRNDDAVLAYFDNERPLSAKGKLALARAMLARGDRRTAEQLVRD HHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH AWRNDSMSAALETSAIEMFGALLTPGDHKARMDAFLYGNDNDPGLRAAKRLGAAQFALAR HHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH ARLAVDNKSGQGKALLDAVPSDLHSDPGYMFASIQTLRRDEKIAEAGRLMLTVPRDPNRL HHHEECCCCCCCCHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHH HNLDEWWIERRLLARKLIDIGDYRLAYLVARNAATPTREVYKTEHEFTAGWIALRLLKDP CCCHHHHHHHHHHHHHHHHCCCHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCH ATAAQHFARIGTDTTNPTALARAGYWQGRAAEAMGRTQDARAAYSAAAAQSTSYYGQLAR HHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH AKLGLPQLDLNGAPSSHGRGVERLEVVRAVQLLYAIGEGDVAIPIFADVGENGDTDALLG HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHH LSELAARNNDARAMLLVGKAALNRGLPFDHYAYPMVGIPQFKQFGPEVERSIVYAIARQE HHHHHHCCCCCEEEEEEEHHHHHCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCC SGFNPAVVSPAQAYGLMQVTPDAAKYVCRRHGCTYDARRLKDDSVYNAALGAAELGGLIE CCCCCCEECHHHHCCEEEECCHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH DYRGSYIMTFAGYNAGRGSVRKWVERYGDPRDPKVDAVDWVELIPFSETRNYVQRIMENL HHCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHH QVYRARFGGGNRLQIDADLRRGAAAVE HHHHHHCCCCCEEEECHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]