| Definition | Rhodopseudomonas palustris HaA2, complete genome. |
|---|---|
| Accession | NC_007778 |
| Length | 5,331,656 |
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The map label for this gene is trpD [H]
Identifier: 86749914
GI number: 86749914
Start: 3188470
End: 3189495
Strand: Direct
Name: trpD [H]
Synonym: RPB_2797
Alternate gene names: 86749914
Gene position: 3188470-3189495 (Clockwise)
Preceding gene: 86749913
Following gene: 86749915
Centisome position: 59.8
GC content: 68.42
Gene sequence:
>1026_bases ATGGGGACCATGATCGATTTCAAGGCAGTTATCGCGAAGGTCGCGACGGGGGCGTCGCTGACCAGGGACGAAGCGGCGAA CGCGTTCGACGCGATGATGTCGGGCGACGCGACGCCGTCGCAGATGGGTGCATTGCTGATGGGCCTGCGAGTCCGCGGCG AGACCGTCGACGAAATCACCGGCGCGGTGACGACGATGCGCGCCAAGATGCTGACGGTCGCAGCGCCGCCCGACGCGGTC GACGTCGTCGGCACCGGCGGCGACGGCTCCGGCTCGGTCAACGTCTCGACCTGCACTTCGTTTGTCGTGGCCGGCTGCGG CGTTCCGGTCGCCAAGCACGGCAACCGCGCGCTGTCGTCGAAATCCGGCGCCGCCGACGTGCTCAATGCCCTCGGCGTCA AGATCGACATCACCCCGGACCACGTCGGCCGCTGCGTGGCGGAGGCCGGCATCGGCTTCATGTTCGCGCCGACGCATCAT CCGGCGATGAAGAACGTGGGTCCTACCCGCGTCGAGCTCGCTACCCGCACGATCTTCAATCTGCTCGGGCCGCTGTCGAA TCCCGCCGGCGTCAAGCGCCAGATGATCGGCGTGTTCTCGCGGCAATGGGTGCAGCCGCTGGCGCAGGTGCTGCAGAATC TCGGCTCAGAATCGATCTGGGTGGTGCACGGCTCCGACGGGCTCGACGAGATCACCCTGTCCGGCCCGACCGCCGTCGCC GAATTGAAGAACGGCGAGATCAGGACCTTCGAGATCGGCCCCGAGGACGCCGGCCTGCCCCGCGCGCCGGCCGACGCGCT GAAGGGCGGCGATGCCGAGGCCAATGCGGTGGCGCTGCGCGCCGTGCTGGAAGGCATGCCGGGGCCGTATCGCGACGTCG CGCTGCTCAACGCCGCGGCGACGCTGATCGTCGCCGGCAAGGCGAAGGATCTCAAGGAAGGCGTCGCGCTCGGCGCCCAA TCGATCGACAGCGGCGCCGCCGAAGCACGTTTGAAAAAGCTGATCGCGGTATCGGCGGCCGCCTAA
Upstream 100 bases:
>100_bases GTCGAAAAGCAGATCGGCACCAAGATCAACCAGCAGGCTGTGGCTCAGGCGACGGGGGCGGCGACCAACTGACGAAGGCA TCCGCCTTCGCCCGTCGCCG
Downstream 100 bases:
>100_bases GCGGGGTGAAATCGGTTCGTCATTGCGAGCGGAGCGAAGCAATCCAGAACGCGGTGCACGGAGCTGGATTGCTTCGTCGC TTCGCTCCTCGCAATGACGA
Product: anthranilate phosphoribosyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 341; Mature: 340
Protein sequence:
>341_residues MGTMIDFKAVIAKVATGASLTRDEAANAFDAMMSGDATPSQMGALLMGLRVRGETVDEITGAVTTMRAKMLTVAAPPDAV DVVGTGGDGSGSVNVSTCTSFVVAGCGVPVAKHGNRALSSKSGAADVLNALGVKIDITPDHVGRCVAEAGIGFMFAPTHH PAMKNVGPTRVELATRTIFNLLGPLSNPAGVKRQMIGVFSRQWVQPLAQVLQNLGSESIWVVHGSDGLDEITLSGPTAVA ELKNGEIRTFEIGPEDAGLPRAPADALKGGDAEANAVALRAVLEGMPGPYRDVALLNAAATLIVAGKAKDLKEGVALGAQ SIDSGAAEARLKKLIAVSAAA
Sequences:
>Translated_341_residues MGTMIDFKAVIAKVATGASLTRDEAANAFDAMMSGDATPSQMGALLMGLRVRGETVDEITGAVTTMRAKMLTVAAPPDAV DVVGTGGDGSGSVNVSTCTSFVVAGCGVPVAKHGNRALSSKSGAADVLNALGVKIDITPDHVGRCVAEAGIGFMFAPTHH PAMKNVGPTRVELATRTIFNLLGPLSNPAGVKRQMIGVFSRQWVQPLAQVLQNLGSESIWVVHGSDGLDEITLSGPTAVA ELKNGEIRTFEIGPEDAGLPRAPADALKGGDAEANAVALRAVLEGMPGPYRDVALLNAAATLIVAGKAKDLKEGVALGAQ SIDSGAAEARLKKLIAVSAAA >Mature_340_residues GTMIDFKAVIAKVATGASLTRDEAANAFDAMMSGDATPSQMGALLMGLRVRGETVDEITGAVTTMRAKMLTVAAPPDAVD VVGTGGDGSGSVNVSTCTSFVVAGCGVPVAKHGNRALSSKSGAADVLNALGVKIDITPDHVGRCVAEAGIGFMFAPTHHP AMKNVGPTRVELATRTIFNLLGPLSNPAGVKRQMIGVFSRQWVQPLAQVLQNLGSESIWVVHGSDGLDEITLSGPTAVAE LKNGEIRTFEIGPEDAGLPRAPADALKGGDAEANAVALRAVLEGMPGPYRDVALLNAAATLIVAGKAKDLKEGVALGAQS IDSGAAEARLKKLIAVSAAA
Specific function: Tryptophan biosynthesis; first step. Tryptophan biosynthesis; second step. [C]
COG id: COG0547
COG function: function code E; Anthranilate phosphoribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the anthranilate phosphoribosyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1787517, Length=335, Percent_Identity=39.4029850746269, Blast_Score=223, Evalue=1e-59, Organism=Saccharomyces cerevisiae, GI6320561, Length=277, Percent_Identity=32.8519855595668, Blast_Score=121, Evalue=1e-28,
Paralogues:
None
Copy number: 945 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 900 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005940 - InterPro: IPR000312 - InterPro: IPR017459 - InterPro: IPR020072 [H]
Pfam domain/function: PF02885 Glycos_trans_3N; PF00591 Glycos_transf_3 [H]
EC number: =2.4.2.18 [H]
Molecular weight: Translated: 34683; Mature: 34552
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTMIDFKAVIAKVATGASLTRDEAANAFDAMMSGDATPSQMGALLMGLRVRGETVDEIT CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHH GAVTTMRAKMLTVAAPPDAVDVVGTGGDGSGSVNVSTCTSFVVAGCGVPVAKHGNRALSS HHHHHHHHHEEEEECCCCCEEEEECCCCCCCCEEHHHHHHHHHHHCCCCHHHCCCHHHCC KSGAADVLNALGVKIDITPDHVGRCVAEAGIGFMFAPTHHPAMKNVGPTRVELATRTIFN CCCHHHHHHHCCCEEEECHHHHHHHHHHHCCCEEECCCCCCHHHCCCCHHHHHHHHHHHH LLGPLSNPAGVKRQMIGVFSRQWVQPLAQVLQNLGSESIWVVHGSDGLDEITLSGPTAVA HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCHHHH ELKNGEIRTFEIGPEDAGLPRAPADALKGGDAEANAVALRAVLEGMPGPYRDVALLNAAA CCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH TLIVAGKAKDLKEGVALGAQSIDSGAAEARLKKLIAVSAAA HEEEECCCHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure GTMIDFKAVIAKVATGASLTRDEAANAFDAMMSGDATPSQMGALLMGLRVRGETVDEIT CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHH GAVTTMRAKMLTVAAPPDAVDVVGTGGDGSGSVNVSTCTSFVVAGCGVPVAKHGNRALSS HHHHHHHHHEEEEECCCCCEEEEECCCCCCCCEEHHHHHHHHHHHCCCCHHHCCCHHHCC KSGAADVLNALGVKIDITPDHVGRCVAEAGIGFMFAPTHHPAMKNVGPTRVELATRTIFN CCCHHHHHHHCCCEEEECHHHHHHHHHHHCCCEEECCCCCCHHHCCCCHHHHHHHHHHHH LLGPLSNPAGVKRQMIGVFSRQWVQPLAQVLQNLGSESIWVVHGSDGLDEITLSGPTAVA HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCHHHH ELKNGEIRTFEIGPEDAGLPRAPADALKGGDAEANAVALRAVLEGMPGPYRDVALLNAAA CCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH TLIVAGKAKDLKEGVALGAQSIDSGAAEARLKKLIAVSAAA HEEEECCCHHHHHHHHHCHHHHCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA