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The map label for this gene is ytfH [C]

Identifier: 86749736

GI number: 86749736

Start: 3001128

End: 3001622

Strand: Direct

Name: ytfH [C]

Synonym: RPB_2619

Alternate gene names: 86749736

Gene position: 3001128-3001622 (Clockwise)

Preceding gene: 86749734

Following gene: 86749737

Centisome position: 56.29

GC content: 67.07

Gene sequence:

>495_bases
ATGTCCAGGTCACCTGCAAGGAACCTTCACCCGCTGCCACCGGCTCCCGAGCCGGCGTCCGACGCGGCCGTCCTCACCGA
GCGCTTCAGCGCCTGGCAGGCGCAGGGGCTGGACGCCTCGCGCTGCCCGGTGCGCAACGTGCTCGACCATCTCGGCAGCA
AATGGAGCACGCTGTTGCTGATCGCATTGGCCGAAAAGCCTGTGCGATTCAATGCGCTACTGCGAACAGTTCCAGACATT
TCGAGGCGGATGCTGACGCAGACGCTGCGGCATCTGGAGCGCGACGGCCTGGTTGCCCGACAGGTATTCCCGACCAAGCC
GCCGAGTGTCGAGTATCGGCTGTCCGCCGCAGGTCGCTCGGTGCTGACGCCGCTCACGGCGCTGGTCGGCTGGGCGGAGA
GCCATTTTGCCGAGATCGAACAGGCGCGGGCACGCTTCGACGCGGCAGAGGCGACAGCGCCGGTGTCGAGCGGCGAGACT
GCGTATCCCCTCTAG

Upstream 100 bases:

>100_bases
AACGGGGGGAAGACATCGCGAAGCTCCGAGAGTTGATGTCCGATTGAGAGTAGGTCTATAATTGAGACCATCGAAGGATC
GCGTAAGGAGGCAGTTTTTG

Downstream 100 bases:

>100_bases
AACTTGCCGGAAACCCAGCCAAAGGCTAACCCGTCGCCATGGGAAAAAGACTGATTCCGCCGGAGCCGGCCGAGATTCAC
GAAGTGCAGCTTCGTGAAGC

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MSRSPARNLHPLPPAPEPASDAAVLTERFSAWQAQGLDASRCPVRNVLDHLGSKWSTLLLIALAEKPVRFNALLRTVPDI
SRRMLTQTLRHLERDGLVARQVFPTKPPSVEYRLSAAGRSVLTPLTALVGWAESHFAEIEQARARFDAAEATAPVSSGET
AYPL

Sequences:

>Translated_164_residues
MSRSPARNLHPLPPAPEPASDAAVLTERFSAWQAQGLDASRCPVRNVLDHLGSKWSTLLLIALAEKPVRFNALLRTVPDI
SRRMLTQTLRHLERDGLVARQVFPTKPPSVEYRLSAAGRSVLTPLTALVGWAESHFAEIEQARARFDAAEATAPVSSGET
AYPL
>Mature_163_residues
SRSPARNLHPLPPAPEPASDAAVLTERFSAWQAQGLDASRCPVRNVLDHLGSKWSTLLLIALAEKPVRFNALLRTVPDIS
RRMLTQTLRHLERDGLVARQVFPTKPPSVEYRLSAAGRSVLTPLTALVGWAESHFAEIEQARARFDAAEATAPVSSGETA
YPL

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=104, Percent_Identity=41.3461538461538, Blast_Score=89, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 17943; Mature: 17811

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSPARNLHPLPPAPEPASDAAVLTERFSAWQAQGLDASRCPVRNVLDHLGSKWSTLLL
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHH
IALAEKPVRFNALLRTVPDISRRMLTQTLRHLERDGLVARQVFPTKPPSVEYRLSAAGRS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEHHHCCHH
VLTPLTALVGWAESHFAEIEQARARFDAAEATAPVSSGETAYPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SRSPARNLHPLPPAPEPASDAAVLTERFSAWQAQGLDASRCPVRNVLDHLGSKWSTLLL
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHH
IALAEKPVRFNALLRTVPDISRRMLTQTLRHLERDGLVARQVFPTKPPSVEYRLSAAGRS
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCEEEHHHCCHH
VLTPLTALVGWAESHFAEIEQARARFDAAEATAPVSSGETAYPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]