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The map label for this gene is ybjK [C]

Identifier: 86749734

GI number: 86749734

Start: 2999539

End: 3000162

Strand: Direct

Name: ybjK [C]

Synonym: RPB_2617

Alternate gene names: 86749734

Gene position: 2999539-3000162 (Clockwise)

Preceding gene: 86749733

Following gene: 86749736

Centisome position: 56.26

GC content: 66.51

Gene sequence:

>624_bases
ATGATCGAAGGTGAGGCGGCTGTCAACAGCATGGACAGGATCGATTTCGAAGCGAGTGACCGCGAGCGCCCAGTGATGGA
GGCTACATTGCGCCTCATCGGGCGCGGTGGGCTCAAGGGCGTCACCCACAGGGCGGTCGCGGCTGAAACCGGCCTGTCGC
TCGGCGCGATCACCCATCATTTCGGCACGCGCGATCTGCTGGTCGAGGCCGCGCTGAAATTCGCCCTGATGCGCGAGGTC
AGGCGTCTGCGCGCGCTGGCGCTGAGCCTGCAGAGCGACGCGCTCGACGTGGAAGCGTGGATCGACGCGCTGGTCGGCTG
GTACACCAAAGAACTCGACTCCGACGCCGAGATTCATATCGCCTGTTACGAGGCGTTCCTGGCGGCGGCGCGCGACGATC
GCTACCGGCCTATCGTCGCCGAATGGTACGAGACCTGGCGGCGCAGCGCCGAGCTCGCGCTGACCGCGGCGGGCTCGAGC
AGGCCGCAGCTGCATGCGGAGATCTTCGTCTCGGCGCTGGTGGGGATCGTGCTGCAGCAGCTCGCGGCTCCACGCCGGAA
ATTCCGGGCGGAGACGCGGGCTGCCTTGTCCGAATTGATGCGTGGCCTGATCGGAAGAACCTAG

Upstream 100 bases:

>100_bases
CTGCCTCCTCCTCAATAGTGCATTTCGCGGCGTTAGGAGCGTCGGCGTTTCGAGATGCAGAACAGGTTTTCTGTAAAACA
GAACATATGTTCTATAATTG

Downstream 100 bases:

>100_bases
CGCTCAGGCCTTGATGCCTTCAACGTGTCGCCTATCGTTTCGGCATACGGCGTGGTCGGGCGGCCGATCAGGCGGCTGAG
GGTGCGGCTGTCGTCGAACA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MIEGEAAVNSMDRIDFEASDRERPVMEATLRLIGRGGLKGVTHRAVAAETGLSLGAITHHFGTRDLLVEAALKFALMREV
RRLRALALSLQSDALDVEAWIDALVGWYTKELDSDAEIHIACYEAFLAAARDDRYRPIVAEWYETWRRSAELALTAAGSS
RPQLHAEIFVSALVGIVLQQLAAPRRKFRAETRAALSELMRGLIGRT

Sequences:

>Translated_207_residues
MIEGEAAVNSMDRIDFEASDRERPVMEATLRLIGRGGLKGVTHRAVAAETGLSLGAITHHFGTRDLLVEAALKFALMREV
RRLRALALSLQSDALDVEAWIDALVGWYTKELDSDAEIHIACYEAFLAAARDDRYRPIVAEWYETWRRSAELALTAAGSS
RPQLHAEIFVSALVGIVLQQLAAPRRKFRAETRAALSELMRGLIGRT
>Mature_207_residues
MIEGEAAVNSMDRIDFEASDRERPVMEATLRLIGRGGLKGVTHRAVAAETGLSLGAITHHFGTRDLLVEAALKFALMREV
RRLRALALSLQSDALDVEAWIDALVGWYTKELDSDAEIHIACYEAFLAAARDDRYRPIVAEWYETWRRSAELALTAAGSS
RPQLHAEIFVSALVGIVLQQLAAPRRKFRAETRAALSELMRGLIGRT

Specific function: Unknown

COG id: COG3226

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22958; Mature: 22958

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEGEAAVNSMDRIDFEASDRERPVMEATLRLIGRGGLKGVTHRAVAAETGLSLGAITHH
CCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHH
FGTRDLLVEAALKFALMREVRRLRALALSLQSDALDVEAWIDALVGWYTKELDSDAEIHI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
ACYEAFLAAARDDRYRPIVAEWYETWRRSAELALTAAGSSRPQLHAEIFVSALVGIVLQQ
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHH
LAAPRRKFRAETRAALSELMRGLIGRT
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIEGEAAVNSMDRIDFEASDRERPVMEATLRLIGRGGLKGVTHRAVAAETGLSLGAITHH
CCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHH
FGTRDLLVEAALKFALMREVRRLRALALSLQSDALDVEAWIDALVGWYTKELDSDAEIHI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH
ACYEAFLAAARDDRYRPIVAEWYETWRRSAELALTAAGSSRPQLHAEIFVSALVGIVLQQ
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHH
LAAPRRKFRAETRAALSELMRGLIGRT
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA